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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0257900 |
| Transcript ID | LotjaGi3g1v0257900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger, B-box; TAIR: AT1G78600.1 light-regulated zinc finger protein 1; Swiss-Prot: sp|Q9SYM2|BBX22_ARATH B-box zinc finger protein 22; TrEMBL-Plants: tr|A0A0L9UI68|A0A0L9UI68_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0257900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:44823339..44828247) extracted from Lotus japonicus Gifu genome v1.2.
CAGTCAAACACCACAACCATGCAACTTGGAAAAAACAAGATATTTGTTCTTTGTAATGTTTTTTGCTGGATTTTATTACA TTACAGTTCCATGAACAAAGCCAGCAAAGGCGGTCTCCTCTGCCACGACACTACCCACTAGCTGCCACGTGTACACCGAG CTTCGTGGCACCAAAATATCCTCCATTTTCCTTCCTTTCTTTCTTTCTTTCTTCCCCGCTTCTTAAACCCTCTCTTCAAT GCGCGTTAACCTGCTTCCTCTATATTCTATCTCTCTATCTTCTTCTTCTTCTTCTTCTCTCAATTTCCACCGCAAAATCA CTCTGAATTTGATCAAATTTTATAGACAAGAGGAACAATTTTGGAGATAAGCAAGGGATTTTGAAGAGGATGAAGATTCA GTGTAACGTGTGTGAAGGTGCGGAGGCGAAGGTTCTGTGCTGTGCTGATGAGGCAGCGCTGTGTTGGGATTGTGATGAGA AGGTTCATGCTGCTAATAAACTCGCTAGCAAGCACCAGAGAGTTCCTCTTTCTCTCTCTTCCTCTCATATGCCTAAATGT GATATTTGCCAGGTAATTTCTTTTTTCTGTTATTGCAGAATAGAGAGATTTTCTATTTGATTTTATAACTGCTAAATCCA TGGAAAAAGGAATATTGGGTATTATCAAATCAAAGAGTTGTTTTGGATTGTATCCACTTTTGTTGCTGATTTTGCAATAA GTTAGTTTTAGCTGTTGGCAAGTTTTGTAATGGCCTATTCCTATGTTTGGATTGATGGGAAGTGGTGGAATGTGATGAAA TTAAATGGAAGGGAATGTTAGTTATTATATTGGATTGTTTGGTTTTGTTAAATGAGGATGGAATGAAATGGAAGGGGATG GAAGCTATTTCATCGCGTATCGTTATTTACCGTAATACGGTAATACCATTAATTTTCTTACGCCCAAATTGGATGGAAGA GGATTGAGTGGAAACACTTGTGGCTACTAAAACTATGTCTTAGTCATAGGTTAGCTATGTTTGGATATCTGTTGACACGA GTGACTTTTGCACACACTTTAAGATAAATGTGAACAAGACTCTTATTTTGGATTGAGATGAAAGTCCGTTCACATTTCAC TCAAGTGTTATCTGAACACTCACTTAGTGTGAAAAATTAGTTTCATTTTTATTAGATAGATTTCTTAATCTATTTTTTGA TTTCATACTTAGTCTAAAAAATTAGTTTCGATTTTATTACATAGATTTCTATTTCCATTTTTTATGATTTCAGTTTTAAA TACAAAACTGCCATATTGTTTTTACCTTGTATCCTGTTCTCAAAGTTTTTTAAAGGAATCACTGTTTCCTTTTCAAAACA CTGAAAACAATGTGAAAGTTTTTTAGTTAAAATGGAAAACAAGAACTGAAAAAATAAATTGGTAATTGCAACTGGTCCTT ACATTTTGAGTTTTTACAATAAATTCCATTTTTTTCTATAGTTACTAAAAGAGGGCATTCATATTTCTCTATTTATATTT TTGAATTTTAATAATCACATCATTGATTCAATTGCGTGAAGGTGAAGTCTTTGAATGGTTATGGGGCATCTTAAATATAT CATACATCCTTGGAACTTACTTTAAATCTTAATAGATTAGGGGCAATAATATTAATTGGAATCATGTTGAACCCTAATTG TAATCTATACTTCTTCATTTTTGTGTCTAAACTAACAATAATGCACTTTTCTGATTCTCACATTTATTAATTACCTGTTT CAATCTCTCACCTGTGCTTCATGGAGATATTCATTTGCTTTCGTGTCTTCCTCTCTTCCACTTCCTCTCCTTCTCTTTGA GCATGTTTTCATATTTTAGATTTTGGGGAGGGGAAGGGAAGATGTTGGGAAGTTAAAGCATGACCTTGCTATGAGAAGGA GCTTACACATCTTAATAGTTGTTCAGACTTCAGACTTTTTCTTTGTTGGTGGTAACAATAATCTTCTGCGTGCTTCTTGT AACAAGTTAGCATGTGGAATGTGCTTGAGATATTCATTAATTGCTTTTTTATTTCTTTCACCATATTCAGAAGTCAATTC TTTACCTTGGATATGCTAGTCTCTAGTATTAGCCTACTTTGAAAAACCTGTTGCTTCCTTTCAGGAAATAGGAAAAGTTT GGTGTTTATATGGACTCAGAACCTTCTTAATTTGTTATTTGTCCTGATTTAGTTTAAATGAGTTAGAAATGTTTGTTATT TTGGATAAGCTTGTGGTGATGGTAGAGTCTGCTACTCATTACAGGAAGCATTTGGCTATTTTTTCTGTCTAGAGGATCGA GCTCTACTTTGCAGAAAATGTGATTTGTCGATACACACTGCAAATGCATATGTCTCTGGTCATCAAAGATTTCTACTCAC TGGTGTAAGAGTAGGCCTTGAAGCTACAGAACCTGGGGCTTCCTCAACTTCTTTGAAGTCAGATTCGGGAGAGAAAAATT CTGATACGAAGTCTTCTTCTGTCTCCAGAAAGGTTTCTGCAATGCTTCAGTCATCAGATTACAATGAAGTGTTACCCACT GAAGTTGGAGGATTTGGGGAGTTTCCACCAGCTAAGGCGTCTTATGGTGGTGGTTCTACAGCTGGAAACATCTCACAGTG GTTAATTGATGATTTTTTTGGGATTAATGAATTTAGTCAGAACTATAATTACATGGATGGATCATCACGGGTATGTCCAT AGTTGTTGCAGTATAACCCTCATAATTTATTGTCATCCAGATCTGGATGCAATGTTACCTGGTATCTCCTGTTCATTTGT TTTGTTATATCGTAGAGTTTCTATCTTTTGATGCTTTGTCTATTTACTGGGGTTCGTGTTCCAGAACACATATCTAACTT TCATCATGGACTAATTATCTTTATTATACAGTACATACCCGTTTACTCTCTCGCACACATACATGGGGGATGCATGCCCT CGCATACTAACTTTTGCACGTTCCCATGATAAACTGAATCTACACCAGGTGCCTATGCTCATTGCTGCCGAAGGGCTTAA CCTGTCACTTATTATACTTGAAAAATAACTGGACAAAAGGATTATTAGATAGGAAGTTGAGGGACCGTGATAGGGATGAC CCTGTATTTCAAGGGTTTATGCCCTGCTAACATGGTCACATGACTAAACAACTGAAAAACATAGATTTCATAAATATGCT GCAAATTTTGGTCAGGAAAAGGTGTTGTATTGACTACATTGCGGATGATAAATTTGACAGTTTGTGAAGAACTGTGGGGT ACATGATTGGATGATGAGCTATTGTTGCATCACTATCTATCAAAAACTGATATTTTCCCACATTAAGATTATTAAACTCA TTCAGTTGATTGTTCTCGCATTTTTTCGTGTATTTGTTTACTTTGTAAGGTATATAGACAAACTACACTATGTATACATT ATATCTGCATCTATGTTGTTGCCTAAATTAGTGACCAAACTGAGTGCTTTGACATTATAAACAATTGTTCATGACCTATC CATTCAAATTGTGCTTTGATATTGGTTAAAAGCTTTGTTATAGTCTTAGCTCTATGGTTGTAGGGTTCTGTGATTTTCTT TTTCACCTCTTGTTTATCGGATGAGTTTGTGCAGGCTGACAGTGGTAAGCTTGGGGATTCTGATTCTCCTTTTTTAAGAT CCGGTGAAGACGAAATGGAGGATGATGACTGCTTGGGACGTGTTCCAGATTCATCCTTGTCAGTTCCTCAGATTCCATCC CCACCTACAGCTTCTGGTTTACACTGGCCAAAAAACCCTCAATATTCATCTGATAGTGGCCTTTTTGTTCCTGACATATC TTTTTCTAGCATGCAACGGCCACAGAGTAGTAGTATTTTTTCAAGACCACGCAGGCATATTTAATTTGTTTCCTCTCATC CCTTCCCTAATAACCTTCAGACGGTTTTGCTTTTTTTATTTGTTATCTGGTTTGATGCTATTGATTAGCTAAGAATTTCA TCATGGATGTCTCTGTTTCTTCTTGGGAGTGAATTTCTAACTCCACTTATTGGGTGTGAAAGGCTTTCCAATTAAGTTTG GTCCTGCAGCACTCTTACTTCATTTCTAGAATCCACTGCAGATGCTGCATCTATTTATTTATCAGTATCTTGTTCAATAT GTGTAGGTTGTGTTAGTAGTTTGCTTCTTCACAATACTTAACAATGAGAGGGTTGTATTATAGATGATGACTTTTTCTTC CATTGATATTATTGAGGAAAAGTAGGAATGATTCAAATGCATTTTCCAGAAAGTTGTTGGACTTATTATCATTATTATTA TTATTAAAAATAACAGTTATGATTACTATTATTATTAAGAGTGATGAGAAAAAGCTCATAAATGAGTTGTGTGACATTTC TAAGGATTTGCCTTTGGAAAAAATAAATTGAGAAATTGTTTTGGGATTGGCAATAGAGGTTTATTCGTGACAAATCTAAC CAAATGATTGCCACTTGCCAGGATCTGTTGCTAGTTGTGTTACATTTTTGAAATGGGAATTTTGCTGTTTATAGTCATGA CTCGAGTGGGATTACTTCTTATTGGCGATACTTGTAGTCTGTACTAAAAATTTATGACGAATCTAAAGTTCACTTAATTT CTAAAATGAGGATTGTTATTTGGCATGATGCCAATAAACACACCTCAGACACCAACAGCTTTTTTTTTTATGTGAAAAAA AAAACTAGAGTGCTATAAATTAAAGTGAGATTAGCAGGAAGTTATCAGATTCAAGGGGTGGAGATGTATTTATATAGAAT ATATTGTTTGAATAAATTTTGTAAATGAATGTTTCAGTGAAGAGTTTGTTTAAGAGTATTGTTAATTTCTTGTAAAATTT TGAAATTTTTGTGTTAAAATAATACCCTT
CDS sequence (LotjaGi3g1v0257900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATTCAGTGTAACGTGTGTGAAGGTGCGGAGGCGAAGGTTCTGTGCTGTGCTGATGAGGCAGCGCTGTGTTGGGA TTGTGATGAGAAGGTTCATGCTGCTAATAAACTCGCTAGCAAGCACCAGAGAGTTCCTCTTTCTCTCTCTTCCTCTCATA TGCCTAAATGTGATATTTGCCAGGAAGCATTTGGCTATTTTTTCTGTCTAGAGGATCGAGCTCTACTTTGCAGAAAATGT GATTTGTCGATACACACTGCAAATGCATATGTCTCTGGTCATCAAAGATTTCTACTCACTGGTGTAAGAGTAGGCCTTGA AGCTACAGAACCTGGGGCTTCCTCAACTTCTTTGAAGTCAGATTCGGGAGAGAAAAATTCTGATACGAAGTCTTCTTCTG TCTCCAGAAAGGTTTCTGCAATGCTTCAGTCATCAGATTACAATGAAGTGTTACCCACTGAAGTTGGAGGATTTGGGGAG TTTCCACCAGCTAAGGCGTCTTATGGTGGTGGTTCTACAGCTGGAAACATCTCACAGTGGTTAATTGATGATTTTTTTGG GATTAATGAATTTAGTCAGAACTATAATTACATGGATGGATCATCACGGGTATGTCCATAG
Protein sequence (LotjaGi3g1v0257900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKIQCNVCEGAEAKVLCCADEAALCWDCDEKVHAANKLASKHQRVPLSLSSSHMPKCDICQEAFGYFFCLEDRALLCRKC DLSIHTANAYVSGHQRFLLTGVRVGLEATEPGASSTSLKSDSGEKNSDTKSSSVSRKVSAMLQSSDYNEVLPTEVGGFGE FPPAKASYGGGSTAGNISQWLIDDFFGINEFSQNYNYMDGSSRVCP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 47 | 47 | 10.665 | ||
| Gene3D | 1 | 92 | 92 | 4.9E-8 | – | |
| PANTHER | 1 | 200 | 200 | 3.0E-94 | – | |
| PANTHER | 1 | 200 | 200 | 3.0E-94 | – | |
| CDD | 3 | 47 | 45 | 8.78605E-9 | ||
| SMART | 4 | 47 | 44 | 2.0E-11 | ||
| Pfam | 4 | 47 | 44 | 9.7E-6 | ||
| ProSiteProfiles | 52 | 99 | 48 | 9.186 | ||
| SMART | 52 | 99 | 48 | 3.0E-15 | ||
| Pfam | 54 | 95 | 42 | 2.2E-7 | ||
| CDD | 55 | 99 | 45 | 2.17245E-9 | ||
| MobiDBLite | 111 | 137 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0257900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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