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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0260900 |
Transcript ID | LotjaGi3g1v0260900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Protein yippee-like; TAIR: AT4G27740.1 Yippee family putative zinc-binding protein; Swiss-Prot: sp|Q2V3E2|YIPL5_ARATH Protein yippee-like At4g27740; TrEMBL-Plants: tr|A0A1J7FQU4|A0A1J7FQU4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0260900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:47663486..47665101) extracted from Lotus japonicus Gifu genome v1.2.
GCCTAGCATTGTCTCTATCAAGTGAGGTTAATTTGGTCCATAAACACTGTTTGACCAGCCAGACCAAAAGCCACAGCTCC TTTATCTTCATCCTATATATAAATACTGATGAAACTAGTGTTGGACTAACCTCACGATTTAGCTAAAGTTCAGTGAATTT GATTTGGTTCAGTTTAATGGCGAATATCGGTGAATCTGCTACATACATATGCAGAAACTGCCAAAATCCTATTGCTGTCC GCAGTGAATTGCTCTCTAAAAACTATCTGGTATTGTTGATTCAACTCAATTCTATTTCACTATTTCTTCAAGTTTATATA TTTTCTCAATGTAATTTGAATATCGTTATATCACTGATCTATTTTCACCACTGCTATTAAGCCTAGCTACCGCTGAAAAT TGTTAATCTGAATGACCAGATTCATATAATAGAAACACAACACAGTCAACATCTCATTTTTCTTTTTTTTCTACTTTTCC TAGAAACACAATCAAAACTATTTTTTCTTCAAAAAAAATTGTAAAAAAAAAAAAGAAAAACCAACAATTCATGAGACATG TGTGAATGCATTTCCATGCTATACAGGTTTGACATAGATTTCACATGAAAATTGATGCATTCTCGATAATATTGCCCCAA TTAGAAAAGAATTTAAAGTTAGTGCATCTTGGGCATAAGTCTCTGTCCCAGAGTCCAGATCCAAGCCCTATACATGTATG TATATGGAGGTTTTATTTAGATAAGCATGTATGTATGTATATGGAGGTTTACTGTACTTGTATGCATAATTTAATTTGTT CTTTCTAGGCTCTTCATAATTACGCGAATGAGAAATATCACTAACACTTACTTCTACACTTTTCTTCCAACATTCTTTAC ATTATTTCATTGATTTATTATATGGACTCCACTCTAGGACCAATATTAATATTAAAAAAAATATTAAAGTGAGTGTTATA TATACATTATCCATGGTTGAATTAATTATTTTTTTGGGTCAAAGCTTGAATTAAATATAGAATTCTTGTAATATTTATAT GCATTTGGTGTGAAGAGGCTTGGCTCTTATTCTCATTATTGTTGGGCTATTCAGGGAAAAACTGGGCCGACCTATATGTT CTCTCATGTAAGGAATATTATTGTGGGGCCTAAGCAAGACAGGAACCTGATAACCGGTTTGTACACCATTGCGGGCATAT TTTGCAGCAATTGTGGGGAGGAATTAGGTTGGAAATACATACAAGCTTATGAGGCAAGGCAGAAGTACAATGTAGGAAGG TTCATAAATGAAAGGGCAAAGATTGCCAAGGAATACTAGCATATATAAGTATGGAGTTTAATGTGTATGTTGTGTAAAAT TTCTTTACACGGACACTCCGGGATTGATTGTCACATAGAAATAGCTTTTTAATTTAATTAAAGTAAAAAAGAATGTAATT ACTTTTGAATGTATGATATTAAATAATTAAATTGTTATATGTATACGCATGCATATTTATGGAATGTGATGTCACAAATT AGCAATAACCTCACCTAAAAGTTGCCTTCATTTAAAGCACACTAGCCCGATGATTTCCAACCCTTCCTTCTTTAAGAAGT ACTCCCTCTAGTCCTA
CDS sequence (LotjaGi3g1v0260900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAATATCGGTGAATCTGCTACATACATATGCAGAAACTGCCAAAATCCTATTGCTGTCCGCAGTGAATTGCTCTC TAAAAACTATCTGGGAAAAACTGGGCCGACCTATATGTTCTCTCATGTAAGGAATATTATTGTGGGGCCTAAGCAAGACA GGAACCTGATAACCGGTTTGTACACCATTGCGGGCATATTTTGCAGCAATTGTGGGGAGGAATTAGGTTGGAAATACATA CAAGCTTATGAGGCAAGGCAGAAGTACAATGTAGGAAGGTTCATAAATGAAAGGGCAAAGATTGCCAAGGAATACTAG
Protein sequence (LotjaGi3g1v0260900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANIGESATYICRNCQNPIAVRSELLSKNYLGKTGPTYMFSHVRNIIVGPKQDRNLITGLYTIAGIFCSNCGEELGWKYI QAYEARQKYNVGRFINERAKIAKEY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 105 | 105 | 2.0E-46 | – | |
PANTHER | 1 | 105 | 105 | 2.0E-46 | ||
ProSiteProfiles | 8 | 105 | 98 | 40.429 | ||
Pfam | 9 | 101 | 93 | 9.4E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0260900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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