Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0262000.1

Overview

Field Value
Gene ID LotjaGi3g1v0262000
Transcript ID LotjaGi3g1v0262000.1
Lotus japonicus genome version Gifu v1.2
Description F-box protein family; TAIR: AT2G26850.1 F-box family protein; Swiss-Prot: sp|Q6NLB1|FB118_ARATH F-box protein At2g26850; TrEMBL-Plants: tr|I1LA81|I1LA81_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0262000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:48167775..48186591

We have encountered an error when attempting to retrieve your sequence: Unable to fetch BLAST database metadata.

CDS sequence (LotjaGi3g1v0262000.1

We have encountered an error when attempting to retrieve your sequence: Unable to fetch BLAST database metadata.

Protein sequence (LotjaGi3g1v0262000.1

We have encountered an error when attempting to retrieve your sequence: Unable to fetch BLAST database metadata.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31482
5 318 314 6.0E-161 –
PANTHER
PTHR31482:SF11
5 318 314 6.0E-161 –
Gene3D
G3DSA:1.20.1280.50
7 113 107 1.4E-7 –
SUPERFAMILY
SSF81383
8 65 58 1.24E-10
IPR036047
ProSiteProfiles
PS50181
11 57 47 12.253
IPR001810
Pfam
PF00646
13 58 46 7.2E-6
IPR001810
SMART
SM00256
17 57 41 0.0036
IPR001810

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

Expression data