Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi3g1v0262700
Transcript ID	LotjaGi3g1v0262700.1
Related isoforms 1	LotjaGi3g1v0262700.2
Lotus japonicus genome version	Gifu v1.2
Description	BES1/BZR1 homolog 1; TAIR: AT1G78700.1 BES1/BZR1 homolog 4; Swiss-Prot: sp\|Q9ZV88\|BEH4_ARATH BES1/BZR1 homolog protein 4; TrEMBL-Plants: tr\|G7IR05\|G7IR05_MEDTR Brassinazole-resistant 1 protein; Found in the gene: LotjaGi3g1v0262700
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:48496625..48503050) extracted from Lotus japonicus Gifu genome v1.2.

GTAAATATCTCGAAAACCATGCCCGATTAACCTGCCTCAACGTATTTAGTGCATTTCCTTTTCTCACTCTCGCTTTCTGT CCAAAACTCGTTTTATGCAGCAGCTTCTCTTTCAACACTCTCGCCCGCTTTCCCAACGAACATGCTCCTCCGCTGACGTC TCCATCTCACGCGCTTAGATCTACTCAGATCACCGTCAACCAAACCTCCGATTCATCTTCCCCAACCGCCGCCGTCGTTC CTCGCCGGAAACGGAGGTGATGATGATGGTGATGCTGTCCTTTTGAGCCACTTAGTTTAATTTCTTCCGATCGCGGAGAG CAAGCTCGATCGATCAAATTTAATCGATCCGATTTTCCGGCGAGTTTTTTTTCTCCGGCGGCGAGGATGACGTCGGGGAC GAGACAGCCGACGTGGAAGGAGAGAGAGAACAACAAGAGGAGAGAGAGGAGGAGGAGAGCCATAGCGGCGAAGATCTTCG CCGGTTTGAGGATGTACGGGAACTACAAGCTTCCGAAGCACTGCGACAACAACGAAGTCCTCAAAGCTCTCTGCAACGAA GCCGGTTGGATCGTTGAACCGGACGGCACCACGTATCGCAAGGTAAACAACACCTCCTCACACCACAGTTTACTTTACTC CGTTCTGGTCAATCCAGTGTTGAATTTTCGCTTTACTTTTTTTTATTCTTATTAGTTATTAGATCAATTACATGTTAAAT CAATTGAAATTTGCTCTTCTTTTTCTTTGTTTGGTAATTTTTAGCTTCGATTTTATTTCTGTTAGTTATAGAAAGTTCAG TTGGTGTGTTTATTTGAGGGTACCGTGCGCAATTCGCTGCGTATACGGTGGCATGTGCAGTTTATTGCAGCGCGCGGCGT GGCACATGGTGCTGACGCTGGCAATGATGCTCGGAATCTAAAGGCAGAGAGAGTGAGTGTGTGGATGCATAATATAAAAC GAAAAAAATGCTAGCTGCTACTGTTGCTGGGTGTGTTGTTGTCGTTTTAGAATTAATGGTGAACGGTGATGACTCGCGAG AGGGTTCAGATTCTTTCTTTTTTGCCCTCGCCAGTGGGTGTACGTTAGATCTGTGCCTCTCCATTTGATCGTGGAGGAGC ACAAATATAGGCTTTTGGAATTGATTTTAATGTCACTCCTGTTCAATTTCTCGCCAATTAATTTTACAGTATTTAAGTAT GCTGGAACCAATTATATATGACAGTGATGAACATAAATTATACATTTCCCAATTGAAAGTGGGAGAGGACATGAATATCT AAAGGGGTCACATTAAATTTTCCCTTGTAAAAAAAAGGGGTGACATTAAAATGAATTTCTTTTCATTTTTTCTACATTTG ACAGTTAAGAGACTAATTTCGAGTCATCGAGCTTGGAGATCACATTTGAGTGGGTAGACTTCCCCTATAAATTATTCTCC ATACATCCCGATTAGGCTAGATGATCTAGTTTAAGGAAACCAGTTATTTAGCACAGCTGTGCTAGACATTGGTAAAATAT TAATATCTATCAGTATCTATTAGAGCTGTCAATATGGGTTCCAACCCGCGGGCCAGCTCAACGGGTTGGCTAAATGAGCC GGGTTAAGTTGGTTAAATTTCAGCTTGAAAAGAACTTGGGTTAGTGCAACCCGGTTCGTTTAACCCGCGGGTTAGACAGG CCAACCCGCGGGTCAAGCGAGCCAACCCGTCGGGTTAGAGTTATTTTTAATTAAAAAATTATTTTATTTCTCTTTAATTC CAGGTTAGTTTTATGGATTAATTTTAGATAGAAAAATTGAATTTTTCATTTCTTTTAATTTGAGTCAATTTTTTATGTTT TATTTCTTATTATTATATTATTTATCTCATTTTAAATGTGAAAGTAAAATAGTTGTGTTCTTAAATCCTGTAAATAAAAT TCTTTTTCTATATTTCAAATGTGAGATAAAAATAATTGCGTTGATGAACCTCTTTTTATGAGTTGATACCAATTTCTATA AGTATTTTTTTGAAATTATTTTTTTATAGCATTTTAAACATTTTCTAATCCAATTTCTTAATTTTTTATATTTATTTCAC TCAACCCGCGAGCCAGCCCGCTAACCCGCGAGCTCATTACGGGTCGGGTTGGGTTCATATTTTCCTGACTCGTTAAGACC CCGGGTTGACATAACCCAACTCGTTTTGAACCCAACCCATACGGGCTGACCCATATGGGTTGGGCTGGCTCGTATTGACA GCTCTAGTATGGGATTTGGGTTTGGCACCCCCATGTATTCAATACGGAAATTTAATTTCCGTTTTCAAAACGGAATTTAA AATTCCGATTTGTTTTTTATATGCAATGAACGGTTGAAAATGTGCCACATATGCTAAAATACATAACGGTTTTTTAATTT CCGTTTTTTTCGTATTAAAATCGGAATTTAAATTCCCGTTTTTAATAAAGTGGGGTGCGAAACCCAATAGGTGGGGTGCC AAACCAAATTCCCCTCTAGTATCTATGTGATGGTATTTTGATGATCCGTGTGACCGTGAGAACACGCATAGATCTCGAGG GAGGAAAAAAGGAAAAAACCCGTTTTGGTCATTTTGGTTTTTGAGGGAAAGGGGTAGGTTTTCTTTCTTACGTGGGAATT CGAGAGATTGCCAAGGGTAAATTGGCCAGTTCAGGTGAGTTTGGTGGTATAAGTTGATTGCTGTGCTTGTTGCAACATGG CAGAAGCTTTTACAGACATCGCATGGTACTCTGATTTGGAGAGCCCCCTTTTCCTGATTTCCCGTGATTTTTCTTCTTTT TTCAGGAGGTTGCGGTTGTATTTATTCATTTTTATGCAGCGCCACCTTTAATTTATTGATGACGCTTCCAAGTGTTTTAC TTTTACTAATGCTTGGATAGGACTTTTTTGGGTTGGGTTTCTCTTGTCTTTTACTTTTTCCTTTTTCTATTAAATCTGGA AAACAGGGGTGTGTATAAAGAGGCATCATAATCTTTGTTAAAAATGGACAAAAATTTATGCGAATGGCAAGCAATCTAAG AACATATAATACAAGCATTCAACTAACTTAATTGGGTCAGTTGAAGTTTTAATTAATGATCTATTAATTCGTAGATGTTG CCACCAGATATTAATCTTCTAGATATATACTTTTTTAACAAGTGATTAGTAAATATTAGGCTAAAATGCATTTTTGGCTC CTGATGTTTCAAGTTTGTGCAAATTCTGCCCCTACTCTATTTTTGTCGATGTTTCTACCCCCTCATGTTTTCAAACAGTG CATCGTCTACCCCAGACGATGACGATGCACTGTTTGAAAACATGAGGGGTAGAAACATCGACAAAAATAGAGTAGGGGCA GAATTTGCACAAACTTGAAACATCAGGGGCCAAAAGTGCATTTTAGCCTAAATATTACTACCAAATATCCTCATATTCTT AGAACTCTTCAATGTCACTAATAATGTGTAATTGAATTGAATGAACTAAGAATGACAAATTCTTGACAATCTGCTGAGCT TGATAAAGTCATCAGGTTTTCCTCTTGATTACTGAAATCATGTACTTTTTTTCCTTCACCTGGTTTTCCCAAGGGGTTTT TCCTGGTAAGGTTTTGATGAGACATGATTTCTTTAATTTGTCTCCATGGAGGTGGTGGGTGGTGGGCTTTTTACCAAGAA GGAGGATCATTGATGTTGTTTTGTAATAGTTGCTACATTTAGTTTCTTGTCTCCTCTCTTCCTATTTGTGTTGCGTTAAA GTACCTCTTCTACTTCACTTCAATATAATTCATATGGTTTATAAAAAAAAAAAAAAAAAGAGAAAGTCATCAGTAGTCTG GTTTTTCCTCTCTGGCAGCTGTAGGAGTATCTGTACAGTTTGTTCTAGCAACTGATTTGTTGATTGGTTGTTGTATTTGT AGCTTCTTGTTTAATTAAATTCATGACTCATTTTAGAATTATAAAATATTCGTCTCTTATTATAAGAACCATATTTGTTA AGTTTTCCAAATACATTAAATTATTAGGTATTTTAGTAGCCTGTTTATAGACCAGCTATGTTAGTCCCCGTTTCCTTGTT TGTATGCATTGATTGGACTGCAACAAAAGAAAATAAAGATGTTATTCATAACATTTTTCTTACCAGTGTTCTGTTTGTTT TGTTTTTTTGAAAGACAGTGTTCTGTTAGTTAACTCTTTGCTTTATTTATTAAATATTATTTGTCCGACCATCAATGGTG GAAATTAAATACTGAAATTATTTTCCACTGAAAACACATTACTGTTAGCTTAAAAACTATAGACATTTACACCCCTACCC TCCCACCTCTTCTTTTGTTGTATAAGCTTGTTTTCTTTTCTGTTTGTGGATTTCATGACAGTTTTTCTTTGATTGTGTGT TACAAAAGAAAGGATGTAGCAATTGATTGTATAAACAAAGGCTGGGAAAAGTATGTTTACTGTATGCTTAAGAATTTTGA AATGTATTAAAAATTTGTTTGGAGCATACTGCCATGTAATCTGTTAATTACTTTTAAGATATAAGATTGAATTCATTCAC AACCTGGTTTTCATATAGAAAATTTCTACTTGTGTTTCCTATGGGTGACTTGTGGGTGTTAGAATTTATTCTGAGAAAAA AAGGTTAATCCGAACATGATATTGTGGCCGTTCCTTTTCAAATTAGTCTAGTGCATTATACTAATGTAAGAAAGTGATAT TGTGGGCATAATAGATGCCTTGTTGAAAGGAAAATGGCTACATTTTTCTTTTTAAGCCTACGGATCCCCATCTAGTTTGC TAAAATGATAAATTTTGGTGGTAGAAATGCCTGTCATTTGGAGTCTCATAGTTTTATATATGCTATTCTGAGTTACTAAT GAAGTGATGTTTGTATAAAGGGATGCAAGCCAGTTGAACGCATGGACGTGGTAGGTTGTTCTGCAGCGCCAAGCCCATGT TCATCTTACCATCCAAGTCCCTGTGCTTCTTACAACCCAAGTCCAGGCTCTTCTTCCTTCCCTAGCCCTCGCTCATCGCC TTATGCTGTAAATCCTAATGGGGATGGCAATTCCCTCATTCCATGGCTCAAAAACCTGTCATCTGGATCATCATCAGCAT CCTCTTCAAAGCTTCCACAACTATTTATTCATAGTGGATCTATCAGTGCTCCTGTAACTCCTCCTCTTAGCTCTCCAACT GCCCGAACGCCCCGAATGCAAGCTGACTGGGAGGATCAGTCCACTCGTCCTGGGTGGGGTGGACAGCAGTACCCCTTCCT GCCCTCTTCCACTCCTCCAAGCCCCGGCCGCCAGGTTGTTGACCCAGATTGGTTTGCTGGGATTAGGATGCCCCATGGGG GTCCAAATTCTCCAACCTTCAGCCTGGTCTCTTCTAACCCATTTGGCTTTAAGGACGAGGTTTTCGTCGGCAGTGGTTCC CGCATGTGGACACCTGGGCAAAGTGGGACATGTTCTGCAGCTATAGCTGCTGGCTCTGATCACACTGCTGACATTCCAAT GGCCGAAGCGGTTTCAGACGAATTTGCCTTTGGAAGCAGCACAGCAGGTTTGGTGAAGCCTTGGGAAGGAGAGAGGATCC ATGAAGATTGCGGATCAGATGATTTGGAGCTCACTCTTGGGAGTTCAAAGACCAGGTAGTAAGAATATTTGATCAATCTA TTTACCTATGATATTGTTGAGTTTGGGCTCTTTTTATTCTTTGAAAAGTAAAATTTTAACCTAAATTTTGTTCTATTGCA GGTAAAGTGCTGCATAAATTGATAGTCAGTGGTCCCCTCAATATGAGATTTCACTCTTGTTCCATTCTGTAGAAAGATTA GAGGAGGAAGTTAAAGTGCAGTTGCTCTTCCATTTTCTTTTATTCTTTTTATTTTCTCTTAGGTCTTATTTGTTCCCAAG TTATATATACAGCTTTAGTTTTAGATTTTGGGGTGATTTTGCAACCCTTTTGTTTGGTCAGTGTATTGTTAAACCTTTTA ATATTATTGGAAAGATCAATATACTTGTATGGACTATGGATTGCTTGATTTAATATTTTGAAAGAATGATTACTCGAAGA TTCAACTGTACCTGAATAGCCGAGGATGATATGGTAATTCGGATTGAATGGTGCTTACAAATTCCTCTTACACTTTCTTC CTTTTCTGATTTTATTTCTTCCTTATGTGTGTGAACAGTTAAATCTTTTTGGAGGCCTGCTATCATTCTTCATGGATTTT TGAGATAAAATAATTAAAGTTGTTGTTTGTAATGATTACTGGTGGACCAGTTCGTCAGTACTTTAACCTCTGTTTCCTGA AACTGGAATGGCTCTGACCTCTTGGAAGTTGGAACTTGGCACTGGCTGTGTTATGAGACTAGTAGACTATTAAATTTTAT GTCCTCGACTCCTAGTCAATATATAC

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0262700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACGTCGGGGACGAGACAGCCGACGTGGAAGGAGAGAGAGAACAACAAGAGGAGAGAGAGGAGGAGGAGAGCCATAGC GGCGAAGATCTTCGCCGGTTTGAGGATGTACGGGAACTACAAGCTTCCGAAGCACTGCGACAACAACGAAGTCCTCAAAG CTCTCTGCAACGAAGCCGGTTGGATCGTTGAACCGGACGGCACCACGTATCGCAAGGGATGCAAGCCAGTTGAACGCATG GACGTGGTAGGTTGTTCTGCAGCGCCAAGCCCATGTTCATCTTACCATCCAAGTCCCTGTGCTTCTTACAACCCAAGTCC AGGCTCTTCTTCCTTCCCTAGCCCTCGCTCATCGCCTTATGCTGTAAATCCTAATGGGGATGGCAATTCCCTCATTCCAT GGCTCAAAAACCTGTCATCTGGATCATCATCAGCATCCTCTTCAAAGCTTCCACAACTATTTATTCATAGTGGATCTATC AGTGCTCCTGTAACTCCTCCTCTTAGCTCTCCAACTGCCCGAACGCCCCGAATGCAAGCTGACTGGGAGGATCAGTCCAC TCGTCCTGGGTGGGGTGGACAGCAGTACCCCTTCCTGCCCTCTTCCACTCCTCCAAGCCCCGGCCGCCAGGTTGTTGACC CAGATTGGTTTGCTGGGATTAGGATGCCCCATGGGGGTCCAAATTCTCCAACCTTCAGCCTGGTCTCTTCTAACCCATTT GGCTTTAAGGACGAGGTTTTCGTCGGCAGTGGTTCCCGCATGTGGACACCTGGGCAAAGTGGGACATGTTCTGCAGCTAT AGCTGCTGGCTCTGATCACACTGCTGACATTCCAATGGCCGAAGCGGTTTCAGACGAATTTGCCTTTGGAAGCAGCACAG CAGGTTTGGTGAAGCCTTGGGAAGGAGAGAGGATCCATGAAGATTGCGGATCAGATGATTTGGAGCTCACTCTTGGGAGT TCAAAGACCAGGTAA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0262700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTSGTRQPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWIVEPDGTTYRKGCKPVERM DVVGCSAAPSPCSSYHPSPCASYNPSPGSSSFPSPRSSPYAVNPNGDGNSLIPWLKNLSSGSSSASSSKLPQLFIHSGSI SAPVTPPLSSPTARTPRMQADWEDQSTRPGWGGQQYPFLPSSTPPSPGRQVVDPDWFAGIRMPHGGPNSPTFSLVSSNPF GFKDEVFVGSGSRMWTPGQSGTCSAAIAAGSDHTADIPMAEAVSDEFAFGSSTAGLVKPWEGERIHEDCGSDDLELTLGS SKTR

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	21	21	-	–
PANTHER	PTHR31506:SF19 View details on PTHR31506:SF19 Search for proteins/transripts with this domain View external data on PTHR31506:SF19	1	324	324	4.9E-298	–
PANTHER	PTHR31506 View details on PTHR31506 Search for proteins/transripts with this domain View external data on PTHR31506	1	324	324	4.9E-298	IPR033264 Show description in modal box View details on IPR033264 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF05687 View details on PF05687 Search for proteins/transripts with this domain View external data on PF05687	3	139	137	3.4E-66	IPR008540 Show description in modal box View details on IPR008540 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	97	124	28	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003700 View details of GO:0003700 AmiGO InterPro QuickGO	Molecular function	DNA-binding transcription factor activity	A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.	Subterm of View details of GO:0140110
GO:0006351 View details of GO:0006351 AmiGO InterPro QuickGO	Biological process	Transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.	Subterm of View details of GO:0034645 View details of GO:0097659 Part of View details of GO:0010467
GO:0009742 View details of GO:0009742 AmiGO InterPro QuickGO	Biological process	Brassinosteroid mediated signaling pathway	A series of molecular signals mediated by the detection of brassinosteroid.	Subterm of View details of GO:0043401 Part of View details of GO:0071367

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0262700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi3g1v0262700.1