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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0270400 |
| Transcript ID | LotjaGi3g1v0270400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP2-like ethylene-responsive transcription factor; TAIR: AT2G28550.1 related to AP2.7; Swiss-Prot: sp|Q9SK03|RAP27_ARATH Ethylene-responsive transcription factor RAP2-7; TrEMBL-Plants: tr|I3SSG2|I3SSG2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0270400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:52178458..52183252) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAATACTACTTCATACCTCCACAGAACAAGAAATTTCCGCCGTTAGTAGTGGACGGTTGTTTCCGTCTATGAGACCG CAACTCGACTGTAACAGATTTGTCACCAGTAACCGAACCAGCCGGTTCATCCCATGAGAGAGAAAATGTTTATATATTCC CTCTTCTCTTTAAAATGTGTCTGAATAACAACTTTACAAGTGCTCACGTTTTTTATCCTCTCAACTCTCAAGTCTCTCCG CTGCCATGGAAACCGATAGAAGCCGATAACCGCTCTCTCTACGGTTATAACCGCCGAGCAAACGAAAAATGCAACTACCA TCCACCGCGACGCCGCTGTGAGTTTTTCTCCTTCTCCTCCTCCCCTTCCGGTCGCCGGAAACTTCCTCCGGCGAACTAAC TGTAACTTTAGCATCTACTGATTCTGTTTTTTTCTGTTTCACTGTAGAATCTCTGCTCGCCGGTGAAACTCTCTCTGAAG AACTCTCCACATCTTCAACTGTTTTGCTTTCACTTCACGTGTGTTAATTGATTGTTGTTCTCGATCGGATCGATTTAATC TCACCGGTGATGTTAATGTAGAAGTAGTAGTATTAGTTGACTTGAATAATTAATTAAAGTGATAGATAGCAAAAGTAGAA AGAAATTAAAGACGGTTGAAATTGAATAATAATAACTTGAAGATTAAGCGCCATGTTAGATCTTAATCTGAATGCTGAGT CGACTCACAACGATGACTCGTTTCTCGAAGAAGCTGTTTCTTCCGGAACCTCGAATTCCTCCATCGTGAATGCGGAGGGG TCGAGTAACGGGGTAGGCGATGAGGACTCGTGCTCCACACGCGCCGCCGGACACGTCATCACCTTCGATTTCGGCATCCT TAAGGTGGAAGGAGTGGGGAGCGACGTCGCGGCGGCGACCAGGGAGCTGTTTCCGGTGATTGCTGGGAGTTGGCCGGTGC CGACGTTTGTGGCGAAGAAGAGCGTCGTGGATCTCTCGCTGGATCATCACAGGAGCGAGAACGGTGAGGTGAAGGTGGTT CAGGTACCGCAACCGCAACAGCCTCAGGTGAAGAAGAGTAGGAGGGGTCCAAGGTCTCGGAGCTCTCAGTACAGAGGAGT CACCTTCTACAGGAGGACCGGAAGATGGGAATCGCATATCTGGTTCGTGCACTTCACAGTCTTGAGTTTACTAATTTAGC ATATCTGGTATATTTTTTCCTTTTTTTCAAATAAAATATCTGCTATTGTTTGATTATTGGACAGTAATTGTAATTTGCTG TGAAATTTGGATTCGGTTTTACCTGGTTGAATACCAACTGAACTTTTTTATTTTTTGGATTTTATTTGTAATGGTGTAGG GATTGCGGGAAACAAGTCTATTTGGGTAAGGATTTGTATTTTGATTGATTAATTCAATTTATATGTAAGATAATTCGATG TTTCTTTGCTGATTTTAGTGTCTTTTCTATGAAATTGGTATTGGTCTTTGTAGGTGGATTTGATACCGCTCATGCAGCTG CTAGGTAAGATTTTTGCACATATTTTAATATCCTTTGAGCAAAACTGTCCTTTTGATTTTAAGATGGAGATTTTCCAGTT TTCTTCCTCAATTAACTTGGAATTTTTCAAATTTAGAGCTTATGATCGAGCTGCAATCAAGTTCAGGGGTCTTGATGCTG ACATTAATTTCAACCTTGTTGATTATGAGGACGATCTGAAACAGGTTAAAAAAATGCATCAATTTTTTGTTACCATAAAT CTAGATGGAGCCTGCAATTGGTTTTTTACTGTTTTCTTTATGCTTGACAGATGAAGAATCTCTCCAAGGAGGAATTCGTG CACATACTGCGTCGCCACAGCACCGGTTTCTCAAGGGGGAGCTCAAAATACCGTGGAGTGACACTTCACAAATGTGGCCG TTGGGAAGCTCGAATGGGGCAATTCCTTGGCAAAAAGTGAGGACCTACTTTTATGTTAACTGAAACTAAATTTGTGTTCT GCTGTGTGATTATTGGATTAGGATATTAGTATGAATTGAATTCAAGTACCTGTTGGCCTGCAAAGCGAATTGGTTTCAGC TTGGTTCTCAAATGGGTCTTTACTCTTTAGGCTTTTTCCATGTTTGGAGAAACATGTCTAAGATGCCTGTTTTAAAGAAA CAATTAGAGATTGCAATGCTTTCGTGCAGGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGTCCTA ATGATGCATGAATTACTTTCTACCTGCACTGATTTTTTTACCCTGAATTATCAAAAAGTTCATTAGGGTTGCAACCAACA CATGTCTCCCTTTTTTGTTTTTCTGCAAATTAGGGCCTATGACAAGGCAGCTCTCAAGTGCAATGGAAGAGAGGCAGTGA CCAACTTTGAGCCATGTACATATGAAAGCGAGATGAAACCCGAAGCTATTAATGAAGGTAAACACTTCATAGCAACATCT TCTGACTTCTGTTATTTTTTATTTCCAAGTGATTACCAGTTTTAGTAAAATGTTTTGTGTGTGAAGTGATTATTTATATT GTCTTCCAACACAGGTGGCAATCACAATCTTGACCTCAATTTGGGTATGGCAACCCCAGGACATGGTCCCAAAGATAACA GGGGTCATCTTCAGTCCCAGCCTGTCCCTTACAACATGCATCCTGGAAGAAGTTCAAAGGTATATAGCTGAACCTTACAT CCCTTACTTTAAGATATCTGTAAAATTATCGGGAAGATTTATATCACAGTATCATCCTCTATGCACTCAAGGTAGTTCAG ACATTATTGCTGTTTAGCAGATTTTTTTAACGCAAGCAGAGTGATTTTGGCCTTGGTGGGCTCACCAATAGCTAATTAAT ACCTGCTTTTTGTGTTTTTTTTTTTGTTACATTAGAAAAATACCTGCTTTTGTTTGACACGGTTGATCTCTGTGAAACAT TTTGCTGTTGATATTATTTTGTAACGGTGAATCACATAGCATAATTAGCTTAAGCGGTTAGTATTCTGTTATTACGAGTT AGTTACTGCTGCTCACTTCTATATAACAGAATTACAGAACTTGTATTTCATTTTTTAGTTCAATGTAGAATTCCATTCTC TCTTATCTTCTCCAAACCAGTTTTTGTCCAATATCATAGTAACTAATCAGATTTATGCCTTAATTAGTTGTCATAATTAG GTGGTTTCAATTTATTTGCAGATGGAGACAAATGCTAATTCAGTCATTGGTGATCCGTCTTTGAAAAGGCTGGTAGTTAC TCAAGACCGTCCTTCTGTATGGAATTCCACGTACTCCCGTTTCTTTCCCACTGAGGTGAGTTCACTCACTACTATTTTTC AGTTTACAACTGCAGTGTATTGCCTATTTCTCTGGAAAGGTGCTTGACATAAAGTGTTTTAGATTTCTTTGTTAGTAGTA TCTGCCTCAGAGTTTAGAACTAGAAGGAATGTATGATTTTTTATTTCTACAGTGCAATCATTATCAGTAAAGTCATGGGA ATTTGTCTGTTATATGTATATATTTGATGTTCTGTCACTCATTCTTTTACAAATTGAGTTTGTCCCCAAATGTGTACATA ATTAAGCAGTCCTTGAAGTGGTGAGTCCATAAGTTGGTCCTTGAAATTCATAAATAAATTCTATGTAATGGCCATTTTTG TCATAAAATGAGCTGAAATTGGAATGTGGCTCCTCCATCTCAGGCATTAGGATAATATTTCCCGTGCTGCTTTCCTTTTC AATTTTGTATACCTATACAGAGTAAACATGCTGGGGGACTAACATTTTGCATGAATAGTACTTGATGGCACCGTTGGCAT GTTATATAAAAATAAGCCTATATTTGAATGATTCTTGAAATATTTTGCAGGAAAGAGCAGAGAGAATAGGCTTAGATCCT TCAAAAGGACATAGCAACTGGGCGTGGCAAACGCATGGGCAAGTGAGCGGTGCTACCCCAGTACCACCGTTCTCTTCTGC AGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCACCACCCACTCCCATCTTTCCAACAAAATCTATGAACTCAATTC CACAGAGCCTCTGTTTCACTTCACCCAGTGCACCTGGTAGCAATGCATCTCAATACTACTATCAGGTGAACTCCCAGAAG GCACCATCATAGCCTTTCTTGTGTGATACCGAAATGAATGGATAATTGCTACAAACCATTGCCTTAAAAAACATATTGTA TAATTCAGATAGAGATTGATGTATACTGAGATGTGACATCTAATTGCACCTCTTGGTTAAAACCACTATGAACGCCATGT ATTAAGCAAAGAACTATTTTGAGTGTGCAAGTTTCTCTGACGATTCTGTTTTTTCAAAATTAGTAACAGCAAGTTATCCA AATTCAGGGTATTCTCCTCCTACCAATTTTGAGATTTTAGGCAAACCCTGAAAATGGGAGGAAACAGTAGAGTATTTTGT ACTTTTTATGGCAACTTCACAATGTGATTGACTACCTTGTTTAATAGCCCTGTCATCTAATTCCTCTGGCGTAAACCCTG CACTCGAGTTCTGAATAAAATTGGACCAAAAAAGAAAAAAGTTCTGAATAAATAAGCTAAATAACAGAGGTTTGCATTCT GTGAAGCATGACTACTCCATATTTTGCAGTAAACATATTGGAGATTGGATACGCATCGGTATGGGTACACATGAGGCAAT TCTAAACAAGTCCTAAGTATTCACATTCTTGTGAGAAAATCTTTTAAATATTTTTTCCCCTAAGAGTCAGAACTA
CDS sequence (LotjaGi3g1v0270400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGATCTTAATCTGAATGCTGAGTCGACTCACAACGATGACTCGTTTCTCGAAGAAGCTGTTTCTTCCGGAACCTC GAATTCCTCCATCGTGAATGCGGAGGGGTCGAGTAACGGGGTAGGCGATGAGGACTCGTGCTCCACACGCGCCGCCGGAC ACGTCATCACCTTCGATTTCGGCATCCTTAAGGTGGAAGGAGTGGGGAGCGACGTCGCGGCGGCGACCAGGGAGCTGTTT CCGGTGATTGCTGGGAGTTGGCCGGTGCCGACGTTTGTGGCGAAGAAGAGCGTCGTGGATCTCTCGCTGGATCATCACAG GAGCGAGAACGGTGAGGTGAAGGTGGTTCAGGTACCGCAACCGCAACAGCCTCAGGTGAAGAAGAGTAGGAGGGGTCCAA GGTCTCGGAGCTCTCAGTACAGAGGAGTCACCTTCTACAGGAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGG AAACAAGTCTATTTGGGTGGATTTGATACCGCTCATGCAGCTGCTAGAGCTTATGATCGAGCTGCAATCAAGTTCAGGGG TCTTGATGCTGACATTAATTTCAACCTTGTTGATTATGAGGACGATCTGAAACAGATGAAGAATCTCTCCAAGGAGGAAT TCGTGCACATACTGCGTCGCCACAGCACCGGTTTCTCAAGGGGGAGCTCAAAATACCGTGGAGTGACACTTCACAAATGT GGCCGTTGGGAAGCTCGAATGGGGCAATTCCTTGGCAAAAAGGCCTATGACAAGGCAGCTCTCAAGTGCAATGGAAGAGA GGCAGTGACCAACTTTGAGCCATGTACATATGAAAGCGAGATGAAACCCGAAGCTATTAATGAAGGTGGCAATCACAATC TTGACCTCAATTTGGGTATGGCAACCCCAGGACATGGTCCCAAAGATAACAGGGGTCATCTTCAGTCCCAGCCTGTCCCT TACAACATGCATCCTGGAAGAAGTTCAAAGATGGAGACAAATGCTAATTCAGTCATTGGTGATCCGTCTTTGAAAAGGCT GGTAGTTACTCAAGACCGTCCTTCTGTATGGAATTCCACGTACTCCCGTTTCTTTCCCACTGAGGAAAGAGCAGAGAGAA TAGGCTTAGATCCTTCAAAAGGACATAGCAACTGGGCGTGGCAAACGCATGGGCAAGTGAGCGGTGCTACCCCAGTACCA CCGTTCTCTTCTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCACCACCCACTCCCATCTTTCCAACAAAATC TATGAACTCAATTCCACAGAGCCTCTGTTTCACTTCACCCAGTGCACCTGGTAGCAATGCATCTCAATACTACTATCAGG TGAACTCCCAGAAGGCACCATCATAG
Protein sequence (LotjaGi3g1v0270400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLDLNLNAESTHNDDSFLEEAVSSGTSNSSIVNAEGSSNGVGDEDSCSTRAAGHVITFDFGILKVEGVGSDVAAATRELF PVIAGSWPVPTFVAKKSVVDLSLDHHRSENGEVKVVQVPQPQQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCG KQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEDDLKQMKNLSKEEFVHILRRHSTGFSRGSSKYRGVTLHKC GRWEARMGQFLGKKAYDKAALKCNGREAVTNFEPCTYESEMKPEAINEGGNHNLDLNLGMATPGHGPKDNRGHLQSQPVP YNMHPGRSSKMETNANSVIGDPSLKRLVVTQDRPSVWNSTYSRFFPTEERAERIGLDPSKGHSNWAWQTHGQVSGATPVP PFSSAASSGFSISATFPPPTPIFPTKSMNSIPQSLCFTSPSAPGSNASQYYYQVNSQKAPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 461 | 460 | 9.5E-240 | – | |
| PANTHER | 2 | 461 | 460 | 9.5E-240 | – | |
| MobiDBLite | 20 | 45 | 26 | - | – | |
| MobiDBLite | 119 | 140 | 22 | - | – | |
| SUPERFAMILY | 138 | 195 | 58 | 7.85E-16 | ||
| Pfam | 138 | 187 | 50 | 2.7E-9 | ||
| Gene3D | 138 | 197 | 60 | 4.0E-19 | ||
| SMART | 139 | 201 | 63 | 4.6E-31 | ||
| CDD | 139 | 194 | 56 | 1.08488E-11 | ||
| ProSiteProfiles | 139 | 195 | 57 | 17.82 | ||
| SUPERFAMILY | 230 | 273 | 44 | 2.88E-6 | ||
| CDD | 230 | 273 | 44 | 3.65002E-13 | ||
| SMART | 231 | 279 | 49 | 7.7E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0270400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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