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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0270400 |
| Transcript ID | LotjaGi3g1v0270400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP2-like ethylene-responsive transcription factor; TAIR: AT2G28550.3 related to AP2.7; Swiss-Prot: sp|Q9SK03|RAP27_ARATH Ethylene-responsive transcription factor RAP2-7; TrEMBL-Plants: tr|I3SSG2|I3SSG2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0270400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:52178650..52182926) extracted from Lotus japonicus Gifu genome v1.2.
TTTACAAGTGCTCACGTTTTTTATCCTCTCAACTCTCAAGTCTCTCCGCTGCCATGGAAACCGATAGAAGCCGATAACCG CTCTCTCTACGGTTATAACCGCCGAGCAAACGAAAAATGCAACTACCATCCACCGCGACGCCGCTGTGAGTTTTTCTCCT TCTCCTCCTCCCCTTCCGGTCGCCGGAAACTTCCTCCGGCGAACTAACTGTAACTTTAGCATCTACTGATTCTGTTTTTT TCTGTTTCACTGTAGAATCTCTGCTCGCCGGTGAAACTCTCTCTGAAGAACTCTCCACATCTTCAACTGTTTTGCTTTCA CTTCACGTGTGTTAATTGATTGTTGTTCTCGATCGGATCGATTTAATCTCACCGGTGATGTTAATGTAGAAGTAGTAGTA TTAGTTGACTTGAATAATTAATTAAAGTGATAGATAGCAAAAGTAGAAAGAAATTAAAGACGGTTGAAATTGAATAATAA TAACTTGAAGATTAAGCGCCATGTTAGATCTTAATCTGAATGCTGAGTCGACTCACAACGATGACTCGTTTCTCGAAGAA GCTGTTTCTTCCGGAACCTCGAATTCCTCCATCGTGAATGCGGAGGGGTCGAGTAACGGGGTAGGCGATGAGGACTCGTG CTCCACACGCGCCGCCGGACACGTCATCACCTTCGATTTCGGCATCCTTAAGGTGGAAGGAGTGGGGAGCGACGTCGCGG CGGCGACCAGGGAGCTGTTTCCGGTGATTGCTGGGAGTTGGCCGGTGCCGACGTTTGTGGCGAAGAAGAGCGTCGTGGAT CTCTCGCTGGATCATCACAGGAGCGAGAACGGTGAGGTGAAGGTGGTTCAGGTACCGCAACCGCAACAGCCTCAGGTGAA GAAGAGTAGGAGGGGTCCAAGGTCTCGGAGCTCTCAGTACAGAGGAGTCACCTTCTACAGGAGGACCGGAAGATGGGAAT CGCATATCTGGTTCGTGCACTTCACAGTCTTGAGTTTACTAATTTAGCATATCTGGTATATTTTTTCCTTTTTTTCAAAT AAAATATCTGCTATTGTTTGATTATTGGACAGTAATTGTAATTTGCTGTGAAATTTGGATTCGGTTTTACCTGGTTGAAT ACCAACTGAACTTTTTTATTTTTTGGATTTTATTTGTAATGGTGTAGGGATTGCGGGAAACAAGTCTATTTGGGTAAGGA TTTGTATTTTGATTGATTAATTCAATTTATATGTAAGATAATTCGATGTTTCTTTGCTGATTTTAGTGTCTTTTCTATGA AATTGGTATTGGTCTTTGTAGGTGGATTTGATACCGCTCATGCAGCTGCTAGGTAAGATTTTTGCACATATTTTAATATC CTTTGAGCAAAACTGTCCTTTTGATTTTAAGATGGAGATTTTCCAGTTTTCTTCCTCAATTAACTTGGAATTTTTCAAAT TTAGAGCTTATGATCGAGCTGCAATCAAGTTCAGGGGTCTTGATGCTGACATTAATTTCAACCTTGTTGATTATGAGGAC GATCTGAAACAGGTTAAAAAAATGCATCAATTTTTTGTTACCATAAATCTAGATGGAGCCTGCAATTGGTTTTTTACTGT TTTCTTTATGCTTGACAGATGAAGAATCTCTCCAAGGAGGAATTCGTGCACATACTGCGTCGCCACAGCACCGGTTTCTC AAGGGGGAGCTCAAAATACCGTGGAGTGACACTTCACAAATGTGGCCGTTGGGAAGCTCGAATGGGGCAATTCCTTGGCA AAAAGTGAGGACCTACTTTTATGTTAACTGAAACTAAATTTGTGTTCTGCTGTGTGATTATTGGATTAGGATATTAGTAT GAATTGAATTCAAGTACCTGTTGGCCTGCAAAGCGAATTGGTTTCAGCTTGGTTCTCAAATGGGTCTTTACTCTTTAGGC TTTTTCCATGTTTGGAGAAACATGTCTAAGATGCCTGTTTTAAAGAAACAATTAGAGATTGCAATGCTTTCGTGCAGGTA TATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGTCCTAATGATGCATGAATTACTTTCTACCTGCACTGA TTTTTTTACCCTGAATTATCAAAAAGTTCATTAGGGTTGCAACCAACACATGTCTCCCTTTTTTGTTTTTCTGCAAATTA GGGCCTATGACAAGGCAGCTCTCAAGTGCAATGGAAGAGAGGCAGTGACCAACTTTGAGCCATGTACATATGAAAGCGAG ATGAAACCCGAAGCTATTAATGAAGGTAAACACTTCATAGCAACATCTTCTGACTTCTGTTATTTTTTATTTCCAAGTGA TTACCAGTTTTAGTAAAATGTTTTGTGTGTGAAGTGATTATTTATATTGTCTTCCAACACAGGTGGCAATCACAATCTTG ACCTCAATTTGGGTATGGCAACCCCAGGACATGGTCCCAAAGATAACAGGGGTCATCTTCAGTCCCAGCCTGTCCCTTAC AACATGCATCCTGGAAGAAGTTCAAAGGTATATAGCTGAACCTTACATCCCTTACTTTAAGATATCTGTAAAATTATCGG GAAGATTTATATCACAGTATCATCCTCTATGCACTCAAGGTAGTTCAGACATTATTGCTGTTTAGCAGATTTTTTTAACG CAAGCAGAGTGATTTTGGCCTTGGTGGGCTCACCAATAGCTAATTAATACCTGCTTTTTGTGTTTTTTTTTTTGTTACAT TAGAAAAATACCTGCTTTTGTTTGACACGGTTGATCTCTGTGAAACATTTTGCTGTTGATATTATTTTGTAACGGTGAAT CACATAGCATAATTAGCTTAAGCGGTTAGTATTCTGTTATTACGAGTTAGTTACTGCTGCTCACTTCTATATAACAGAAT TACAGAACTTGTATTTCATTTTTTAGTTCAATGTAGAATTCCATTCTCTCTTATCTTCTCCAAACCAGTTTTTGTCCAAT ATCATAGTAACTAATCAGATTTATGCCTTAATTAGTTGTCATAATTAGGTGGTTTCAATTTATTTGCAGATGGAGACAAA TGCTAATTCAGTCATTGGTGATCCGTCTTTGAAAAGGCTGGTAGTTACTCAAGACCGTCCTTCTGTATGGAATTCCACGT ACTCCCGTTTCTTTCCCACTGAGGTGAGTTCACTCACTACTATTTTTCAGTTTACAACTGCAGTGTATTGCCTATTTCTC TGGAAAGGTGCTTGACATAAAGTGTTTTAGATTTCTTTGTTAGTAGTATCTGCCTCAGAGTTTAGAACTAGAAGGAATGT ATGATTTTTTATTTCTACAGTGCAATCATTATCAGTAAAGTCATGGGAATTTGTCTGTTATATGTATATATTTGATGTTC TGTCACTCATTCTTTTACAAATTGAGTTTGTCCCCAAATGTGTACATAATTAAGCAGTCCTTGAAGTGGTGAGTCCATAA GTTGGTCCTTGAAATTCATAAATAAATTCTATGTAATGGCCATTTTTGTCATAAAATGAGCTGAAATTGGAATGTGGCTC CTCCATCTCAGGCATTAGGATAATATTTCCCGTGCTGCTTTCCTTTTCAATTTTGTATACCTATACAGAGTAAACATGCT GGGGGACTAACATTTTGCATGAATAGTACTTGATGGCACCGTTGGCATGTTATATAAAAATAAGCCTATATTTGAATGAT TCTTGAAATATTTTGCAGGAAAGAGCAGAGAGAATAGGCTTAGATCCTTCAAAAGGACATAGCAACTGGGCGTGGCAAAC GCATGGGCAAGTGAGCGGTGCTACCCCAGTACCACCGTTCTCTTCTGCAGCATCATCAGGATTCTCAATTTCAGCTACCT TTCCACCACCCACTCCCATCTTTCCAACAAAATCTATGAACTCAATTCCACAGAGCCTCTGTTTCACTTCACCCAGTGCA CCTGGTAGCAATGCATCTCAATACTACTATCAGGTGAACTCCCAGAAGGCACCATCATAGCCTTTCTTGTGTGATACCGA AATGAATGGATAATTGCTACAAACCATTGCCTTAAAAAACATATTGTATAATTCAGATAGAGATTGATGTATACTGAGAT GTGACATCTAATTGCACCTCTTGGTTAAAACCACTATGAACGCCATGTATTAAGCAAAGAACTATTTTGAGTGTGCAAGT TTCTCTGACGATTCTGTTTTTTCAAAATTAGTAACAGCAAGTTATCCAAATTCAGGGTATTCTCCTCCTACCAATTTTGA GATTTTAGGCAAACCCTGAAAATGGGAGGAAACAGTA
CDS sequence (LotjaGi3g1v0270400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGATCTTAATCTGAATGCTGAGTCGACTCACAACGATGACTCGTTTCTCGAAGAAGCTGTTTCTTCCGGAACCTC GAATTCCTCCATCGTGAATGCGGAGGGGTCGAGTAACGGGGTAGGCGATGAGGACTCGTGCTCCACACGCGCCGCCGGAC ACGTCATCACCTTCGATTTCGGCATCCTTAAGGTGGAAGGAGTGGGGAGCGACGTCGCGGCGGCGACCAGGGAGCTGTTT CCGGTGATTGCTGGGAGTTGGCCGGTGCCGACGTTTGTGGCGAAGAAGAGCGTCGTGGATCTCTCGCTGGATCATCACAG GAGCGAGAACGGTGAGGTGAAGGTGGTTCAGGTACCGCAACCGCAACAGCCTCAGGTGAAGAAGAGTAGGAGGGGTCCAA GGTCTCGGAGCTCTCAGTACAGAGGAGTCACCTTCTACAGGAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGG AAACAAGTCTATTTGGGTGGATTTGATACCGCTCATGCAGCTGCTAGAGCTTATGATCGAGCTGCAATCAAGTTCAGGGG TCTTGATGCTGACATTAATTTCAACCTTGTTGATTATGAGGACGATCTGAAACAGATGAAGAATCTCTCCAAGGAGGAAT TCGTGCACATACTGCGTCGCCACAGCACCGGTTTCTCAAGGGGGAGCTCAAAATACCGTGGAGTGACACTTCACAAATGT GGCCGTTGGGAAGCTCGAATGGGGCAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGC TGCAAGGGCCTATGACAAGGCAGCTCTCAAGTGCAATGGAAGAGAGGCAGTGACCAACTTTGAGCCATGTACATATGAAA GCGAGATGAAACCCGAAGCTATTAATGAAGGTGGCAATCACAATCTTGACCTCAATTTGGGTATGGCAACCCCAGGACAT GGTCCCAAAGATAACAGGGGTCATCTTCAGTCCCAGCCTGTCCCTTACAACATGCATCCTGGAAGAAGTTCAAAGATGGA GACAAATGCTAATTCAGTCATTGGTGATCCGTCTTTGAAAAGGCTGGTAGTTACTCAAGACCGTCCTTCTGTATGGAATT CCACGTACTCCCGTTTCTTTCCCACTGAGGAAAGAGCAGAGAGAATAGGCTTAGATCCTTCAAAAGGACATAGCAACTGG GCGTGGCAAACGCATGGGCAAGTGAGCGGTGCTACCCCAGTACCACCGTTCTCTTCTGCAGCATCATCAGGATTCTCAAT TTCAGCTACCTTTCCACCACCCACTCCCATCTTTCCAACAAAATCTATGAACTCAATTCCACAGAGCCTCTGTTTCACTT CACCCAGTGCACCTGGTAGCAATGCATCTCAATACTACTATCAGGTGAACTCCCAGAAGGCACCATCATAG
Protein sequence (LotjaGi3g1v0270400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLDLNLNAESTHNDDSFLEEAVSSGTSNSSIVNAEGSSNGVGDEDSCSTRAAGHVITFDFGILKVEGVGSDVAAATRELF PVIAGSWPVPTFVAKKSVVDLSLDHHRSENGEVKVVQVPQPQQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCG KQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEDDLKQMKNLSKEEFVHILRRHSTGFSRGSSKYRGVTLHKC GRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAALKCNGREAVTNFEPCTYESEMKPEAINEGGNHNLDLNLGMATPGH GPKDNRGHLQSQPVPYNMHPGRSSKMETNANSVIGDPSLKRLVVTQDRPSVWNSTYSRFFPTEERAERIGLDPSKGHSNW AWQTHGQVSGATPVPPFSSAASSGFSISATFPPPTPIFPTKSMNSIPQSLCFTSPSAPGSNASQYYYQVNSQKAPS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 476 | 475 | 2.4E-260 | – | |
| PANTHER | 2 | 476 | 475 | 2.4E-260 | – | |
| MobiDBLite | 20 | 45 | 26 | - | – | |
| MobiDBLite | 119 | 140 | 22 | - | – | |
| Gene3D | 138 | 197 | 60 | 4.1E-19 | ||
| SUPERFAMILY | 138 | 195 | 58 | 8.5E-16 | ||
| Pfam | 138 | 187 | 50 | 2.9E-9 | ||
| SMART | 139 | 201 | 63 | 4.6E-31 | ||
| CDD | 139 | 194 | 56 | 1.16622E-11 | ||
| ProSiteProfiles | 139 | 195 | 57 | 17.82 | ||
| Gene3D | 230 | 289 | 60 | 1.4E-17 | ||
| Pfam | 230 | 280 | 51 | 9.9E-9 | ||
| CDD | 230 | 288 | 59 | 1.42835E-25 | ||
| SUPERFAMILY | 230 | 288 | 59 | 1.11E-16 | ||
| SMART | 231 | 294 | 64 | 3.4E-31 | ||
| ProSiteProfiles | 231 | 288 | 58 | 15.712 | ||
| PRINTS | 232 | 243 | 12 | 1.7E-5 | ||
| PRINTS | 270 | 290 | 21 | 1.7E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0270400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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