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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0270500 |
Transcript ID | LotjaGi3g1v0270500.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Serine/threonine protein phosphatase 7 long form isogeny; TAIR: AT2G25010.1 Aminotransferase-like, plant mobile domain family protein; Swiss-Prot: sp|Q9SK32|MAIL1_ARATH Protein MAIN-LIKE 1; TrEMBL-Plants: tr|A0A0S3RPZ5|A0A0S3RPZ5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0270500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:52211362..52213592) extracted from Lotus japonicus Gifu genome v1.2.
AGATTATGGCGAGGACAAAGCAAACTAAGAGGGTATCGTCTGAAGAGTTGGCCGATCGTCGTGCCTATCTCCACGCTTCT CATAGGCGAGGTGATCATGATACAGATGTGTCGACTTCTCGGAAGCGGGCTAGGAAGGGTGCTAGGAAGGGGGCTCCGAA GGCGACCACTGAGGTTCCTGCCCCTGCTACTGAGGTTCCTGCTACTCAGGTTCCTGATACTGAGGTTCCTGCCCCTGCTA CTGAGGTTCCTGCTACTCAGGTTCCTGCTACTGAGGTTCCTGCTCTCTCGACGCCTGAGGTTACTGCTACTGAGGTTTCT CCTCAGTCGACGCCTGAGGTTACCGCCCACGATACTGTTGAGCCTTCCACCTCTTCACTTGATATTGATGCAGTTGAGGA GCCGGAGTCGGAGTCGGGGTCTGAGTCTGAGATTGAGGGTGAGGATGTAGAGGTAGAGGATCCGAATATGCCGCCGCTCC AGAGAGATCCACCGTTTCCTGGTGGGCCGGTTGAGTTGTCACTTCTGCAGCATTACCCGGATCACATAGCACCGTGGACG TGGCATACCCTACTAGGCACCACTGACCCTCGTTATTCTGAGCGAGGTGATTTGAGGCTTGCTACTGCTGGTACGAAGCT CGGGCTGATGACGTGTGAGGGGGACAATTACAGGGAGGTCCGGTTGATTGTGGAGAGGAGCGGACTGTATCCACTGGTCA AGTGCAGCTATGTAGAGACGGATCCAGGGCTTATATCGGCCCTTGTGGAGAGGTGGCACGAGGAGACTAGTAGTTTCCAC ATGCCATTTGGGGAGATGACTGTCACCCTTGACGACGTCTCCGCTCTTCTTCACATCCCGGTTGGTGGGAGATTCTACAC TCCAGGAGTGGCCTCGAGATATGATGTGACAGAGACCTGCGCTTTGCTGTTAGGGGGGGATGCAGATTTGTACATGGCTG AGTTTGATAAGCTTAGGGGTCCGACTATGAGGTTCAGCTTCTTGCGAGACCTTTACCCGAAAGCTGTTGCAGGTTTGTTT CATTCATTATCTGAACTTTTTCCAACTATTATTTATATTTACTTAATCATAATTGGTATTACATTGTAATGTAGAGGGGC GGTACGAGCATGCAGCCAGGATGTACCTGATGCATCTTGTTGGCGCGACATTGTTCGCCGACAAGAGTGGGGGGCACTCA TTCTCCGCCCGTTGGATAGGCATGCTACAGGATCTTGAGCGGGTGTCGGAGTTCGCGTGGGGCGCCATGGCCCTTGCCAC GTTGTACGACCAGCTTGGACAGTCTTCTCGCAGCGGGGTCAAACAGATGGGCGGTTACACTTCCCTGTTGATGGCCTGGG TCTTTGAGCACTTTCCAGACAGGCTCGTTCGCCGGTATGCGAACCCGGCTTACACAGAGGACCAGCCCAGAGCTCGTAGG TGGACAGAGTCACGGTCGGGGCATGCTAGGCTTGACGAGAGGCGAGTACTACTTGATGAGTTGACGGCCGACGACGTCAC TTGGACTCCATATGAGGCCCACAGGGAATGGCGACAGCGGGATGAGATGGCTTTGTTCTCAGGCTACATTCGGTGTCCCT ATCCCCCTGCTGTGCGACCTCATCTTCCGGAGCGGGTCATGCGACAGTTTGGGTATATACAGACGATCCCGCGCCACCCT AGTGAGATGGATAGATCTCCCGCAGCTGAGGCTGTTGATGCGGCATTCGCAGGTTATGTGCAGTACTTGTTCCCTGAGGG CGACCCTGCTATAGAGGAGGGACAGGCTGTGGGCGGTTACATGGATTGGTACGCTAGAGTGTCTCATTGTTTCATCATAC CGGATGAGAGGAGGATTGATCTCAGTGCCGTGGTAAATTTTAAATTTTATTTCTATTTTCTTTATGCACTTGTGGTTTTC TGTATGTGATTTACTAACAGCGTTTTTTTTATTATTTACTTTCAGGCTGCTTTGCGTAGGGCTTTAGAAGTCCTTGAGTT GTCACTTGAGGTGGATGATGCTTTGCTGCCAGGCACACAGGCCCGCGCTTTAAAGGAGAGAGCACTTCGCATCCTCCAGG ACTTGGCTGGGACACAGGGCATTGCTTACGCTGCTGGGAGAGGAGGTCTGGGAGCAGGTGGCCAAGTAGGTGGCCGAGCC GGCGGCCGAGCAGGTGGCCGGGAGGGCGGCAGGGCAGCAGGTGGCCGGGAGGGCGGCAGGGCAGGAGCCAG
CDS sequence (LotjaGi3g1v0270500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACCTGATGCATCTTGTTGGCGCGACATTGTTCGCCGACAAGAGTGGGGGGCACTCATTCTCCGCCCGTTGGATAGG CATGCTACAGGATCTTGAGCGGGTGTCGGAGTTCGCGTGGGGCGCCATGGCCCTTGCCACGTTGTACGACCAGCTTGGAC AGTCTTCTCGCAGCGGGGTCAAACAGATGGGCGGTTACACTTCCCTGTTGATGGCCTGGGTCTTTGAGCACTTTCCAGAC AGGCTCGTTCGCCGGTATGCGAACCCGGCTTACACAGAGGACCAGCCCAGAGCTCGTAGGTGGACAGAGTCACGGTCGGG GCATGCTAGGCTTGACGAGAGGCGAGTACTACTTGATGAGTTGACGGCCGACGACGTCACTTGGACTCCATATGAGGCCC ACAGGGAATGGCGACAGCGGGATGAGATGGCTTTGTTCTCAGGCTACATTCGGTGTCCCTATCCCCCTGCTGTGCGACCT CATCTTCCGGAGCGGGTCATGCGACAGTTTGGGTATATACAGACGATCCCGCGCCACCCTAGTGAGATGGATAGATCTCC CGCAGCTGAGGCTGTTGATGCGGCATTCGCAGGTTATGTGCAGTACTTGTTCCCTGAGGGCGACCCTGCTATAGAGGAGG GACAGGCTGTGGGCGGTTACATGGATTGGTACGCTAGAGTGTCTCATTGTTTCATCATACCGGATGAGAGGAGGATTGAT CTCAGTGCCGTGGTAAATTTTAAATTTTATTTCTATTTTCTTTATGCACTTGTGGTTTTCTGTATGTGA
Protein sequence (LotjaGi3g1v0270500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYLMHLVGATLFADKSGGHSFSARWIGMLQDLERVSEFAWGAMALATLYDQLGQSSRSGVKQMGGYTSLLMAWVFEHFPD RLVRRYANPAYTEDQPRARRWTESRSGHARLDERRVLLDELTADDVTWTPYEAHREWRQRDEMALFSGYIRCPYPPAVRP HLPERVMRQFGYIQTIPRHPSEMDRSPAAEAVDAAFAGYVQYLFPEGDPAIEEGQAVGGYMDWYARVSHCFIIPDERRID LSAVVNFKFYFYFLYALVVFCM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 194 | 193 | 5.2E-22 | – | |
PANTHER | 2 | 194 | 193 | 5.2E-22 | – | |
Pfam | 2 | 224 | 223 | 1.4E-27 | ||
TMHMM | 239 | 261 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0270500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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