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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0278200 |
| Transcript ID | LotjaGi3g1v0278200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Replication factor-A carboxy-terminal domain protein; TAIR: AT1G52950.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q65XV7|RFA1C_ORYSJ Replication protein A 70 kDa DNA-binding subunit C; TrEMBL-Plants: tr|G7LDT6|G7LDT6_MEDTR Replication factor-A carboxy-terminal domain protein; Found in the gene: LotjaGi3g1v0278200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:55202433..55206286) extracted from Lotus japonicus Gifu genome v1.2.
CGACTCTCTCAGCATTTCCGTCATCACACAACCGTTTGCTCTGCCCTCTGTGCTCCTTCTCTACTTCTCCTTTTTTACTT CTCAACCCATGTTGTCACACAATTGCATCATCCCCATTCCAGAGTCGACTCTCTCAACATTTCCGTCATCACGCAGTCGT TTGCTCTGCCCTTTGTGCTCCTTCTCTACTTCTCCTTCTTTACTTCTCAATTAGGTTGCCTTCAGGCTCGAATGTTGGCC TACGGATTACGTATTTTACCTCTCTGTGACGCTGTTCTCAGCAGATGCCCAAAGTATTCCTGAAGAAGGGTTTTTTGTCT GTGTATGCAATCAGCAACTGCATGGGTTCATACTCCCCAAGGCTCTTCGTCATCTTCCCTCATGCTACCATTAACAGCTG TGTAGGTTGCTTTACAGATGGATCACATATTACAGATACAGATGGAGGCTCTTACTATACGGTAAGCAAGAATTTCCCCC TATAAATTCACCATCCACCAAGTGTATTTTCTTGTGCTTCATTCTGTGCTTTGAACTGAATTAGAGATAGAGATAGAGCT AGAGAAGAGGTAGAGATGGTTGGGCGTTTGAATCAACTAAGTAGCTTACGTTCGGGTAAAAGTAATGGAAGTATTAGGGT TAGGATCATTCGTATGTGGGAAAGTTGCCCAGTGAATCTACCAATGAAGCCATATTCACTTCACATTGTGCTAATTGATT ATGAGGTTTTGCACCAACTTCTTTAGATTTTCCTTATGTCCATGTCTATGTCTATGTCTATTTATGCCTGCTTATTTGGT TCCTTTATGTATATGGATTTACTGTTTACATAATCGGTACATTTTGTATTGTGTATTATGTACATTAGATATTAGATATC ATATGTTTGTTATTCAGACCAATCTTCATTACATAGATGTGTAGATTACCATGTGTTATTGTGTATACTGTTTATGTTTA TGTTTATTCTCCCAATTTGGTGTATGGTAATATATATTCTTCCCAGTTGTATATACAGTTTTAGCTAATATCTAATTTTT ATCTTCCCTCTTTTTGCTAGGGGGTTAAAATTGAGGCCATTGCTAGAAACAATCTAATCACTAAATTTAAGAATGATCTA CTTGAAGGGAAGGTTTACCGGATTTCGACTTTTATGGTTTCAACCAACAGTGGCTTTTTCATGGCTGCCAACAACGAGTT CAAGATCAATTTGGTTGACAAAACTAAGGCTGTTCTTGAAGAGGATCCCTTGATTCCATTGAACATGTTTACCTTCAAGA ATTCAGAAGAAATCATAGCTACTGGGGGTGATTATAACTACTTGATTGGTACAATAATTTTTCCTGGCCAAGTTCTTGCT TATTCTTTAGGATTTTAGGTTGATTTAGGTTAATTAGGTTAATGCCCTTGATTTTTTCTAACTTTCTCAACTCTCAATTT AACCTTTATTTCTTTATCACATAATGTTTTTATGAACTTATGAAATATTCTCATTCATATGCTTTAACTTATTTTACTTA TTAACTTATTTAACTCATTCCATCAATTGGCAGACATCATTGGCTTGGTTACTAACGTTTCCAAGGAAAAACAATACAGT AAGGGTTGTGGTGTTACTAGGATGATTGAGATGGAGTTGACTGATGATAAGTAAGAATTTTTTTCTAGCCACCTTACCCC CCTGCCTTTGTATGTGTGGAACAGTTATAAATTTAAGCAAGCTGCATTCATAATCTAATTTGAGTAAGTTGAGTAATTTT GTTTTCATTATATGTATAGGGGGAAGATTCAGTGTGCTTTATTTGGCAACTATGTTGATGTTGTCAAGGAATTAGTTGCT TCTAATGGTTATCGTATGGCTGTTGTGATTCTGCAATTTGTCAAGGTCAAGACATTCAAGGGTTAGTTAAGATTAATATT ATTATATTATTATAAGTTTATTGGTGATCAGTTTGTGTATGGTGAATTTGCTAACTGTTAATTTTTTTTCAGGTGATGTT GTACTTCAAAATGTTATGAATGCTACAAATGTTATTTGGAACCCGACCACACAAGAGGCTGCTACTTTTCGTGATGGGTG AGTGAACGGATCATCTTTATTTTACATTTGACATTTGACATATTAGTTAACGCCATTAATGCCCTTATTTTGATTAATTG CAAGGTTGGCTATCCATGGAATTGAATTTGATAAGCTTATAGCTGATATAGCTGATTTTGCTGAGGACGATGATATCCGA GTCATTCCATTAGGTGAGGAGTTCCTTACTTTATATCCCAGGAAAACGATACAACAACTCAACACCACTGCTGAGGTATG TTGTAGTTTATCATCTTATATCTGCATACAAATTTTCAAGTCATCCATAGCTATATATTGTACCCATACCCATCCTTAAT TATTTGGTATGGTTATTTCATGTACATTCATGAAGGATGGAGTTTTTGTAGTTAGAGCTACAATAGCTGGTATAACTCAG GGAGAGAAATGGTGGTACTCATCTTGTCGCTGCCACAAAGCTGTAAGCACCAGGGATGGGATGTACTATTGTCGCAGCTG CTCTAATTATGTTCTTTCAGTTATTCCATGGTATGGTTGTGTTGTAAATATTTTCTTTTTCAATTTTCAATTTTCTATTG TTGCAGTTTATCAATGCGTTACTGATGAGATCTAATCTAATTATAATTTATTGTTCCTAATTACCTTTTTCCTGGCTTTA TTTCTGGCTTTATTCAACCCATGAATGAACAGTTTCCGGATCAAGTTAGAGGTGAATGATGGAGATGCAGATGCTGTTTT TGTGCTATTTGACACTGATAGTCAGCAACTGTTGTCTAGGAGCTGCCAACAGTTGGTCAACTCATCTAAGGTTATAATCA AATATGGTGGTTTTTGGTCCAAGTGTTGCATTGCTTTGTTTCCCTATTTCCAAATAATGTCATTAGCTTATTTGATTATT TGTTGTCATGTTTACATTTTATAACATACTAATATACTCAGTTGTTGATTTATGTACTAAATAATAATATTAACAATATG TTATTAATTGACTTTTACTTTAGGGAAAAGATTCTGATGAATGTCCTACTGAAATAATGAACATTATTGGGAGTGAAATG CTTTTCAAAGTGGAGAAATCAGATGATCGCGCAGAAAAGTTTGATGAGTCATTCAAGGTGAAGAAGATATGCACTGATCT TGCTGTGATTGAAGCATTCAATGACGAGTCAAAGGTTCAAACACCCCACAAGGTTCTCGACATCTAATTAACTTAGATCC TATTTTATCTAATTAGGTTTGTCATTTTTCATATTTGATGTCTGTATGTCATGATTGGTATTGCATTTACATTTTGCAGA TGGTTATTGCCGGTAAATTTCCCAAAACATCTGCTGGATTTGAGGATAGTGCTGATTGCTCTGCAGACCTCTCTAAGATA GGCCCAAATGTTGAGTCTCTTGATGAAATATCAACAGGGGAGGCGTCTGGCCAATGCTCATCTGTGCAGAGCTCTGGTAG TGTTAATTGCCTGCCCAATCCCCCGAAGCGTCTGAAACTAAAGGCTGTCAAATTGGAGCATGAGTAAATCCCTCGCTGAA ACAGTTATTGATTCACAGGATGCTTCATATTTTCCCTACTGTCAGCTGGCTGTGTTCTATATTAGGATTATATTACTATG CGATATGTACTTTGTTATGGTTGTTTGTTAGCAGTCAACGCCTATGTTTCATCCTGTGAGATATTGTATTTTGTTATGTT TAATGTTTAATTTTATGCTATGTACCTGTACATCGATGCCAAACAGCTCATGCTGAACCTTGGCTTTGTTGTATTTGTGT TATCTATGTTAAGT
CDS sequence (LotjaGi3g1v0278200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCAAAGTATTCCTGAAGAAGGGTTTTTTGTCTGTGTATGCAATCAGCAACTGCATGGGTTCATACTCCCCAAGGCT CTTCGTCATCTTCCCTCATGCTACCATTAACAGCTGTGTAGGTTGCTTTACAGATGGATCACATATTACAGATACAGATG GAGGCTCTTACTATACGGGGGTTAAAATTGAGGCCATTGCTAGAAACAATCTAATCACTAAATTTAAGAATGATCTACTT GAAGGGAAGGTTTACCGGATTTCGACTTTTATGGTTTCAACCAACAGTGGCTTTTTCATGGCTGCCAACAACGAGTTCAA GATCAATTTGGTTGACAAAACTAAGGCTGTTCTTGAAGAGGATCCCTTGATTCCATTGAACATGTTTACCTTCAAGAATT CAGAAGAAATCATAGCTACTGGGGGTGATTATAACTACTTGATTGACATCATTGGCTTGGTTACTAACGTTTCCAAGGAA AAACAATACAGTAAGGGTTGTGGTGTTACTAGGATGATTGAGATGGAGTTGACTGATGATAAGGGGAAGATTCAGTGTGC TTTATTTGGCAACTATGTTGATGTTGTCAAGGAATTAGTTGCTTCTAATGGTTATCGTATGGCTGTTGTGATTCTGCAAT TTGTCAAGGTCAAGACATTCAAGGGTGATGTTGTACTTCAAAATGTTATGAATGCTACAAATGTTATTTGGAACCCGACC ACACAAGAGGCTGCTACTTTTCGTGATGGGTTGGCTATCCATGGAATTGAATTTGATAAGCTTATAGCTGATATAGCTGA TTTTGCTGAGGACGATGATATCCGAGTCATTCCATTAGGTGAGGAGTTCCTTACTTTATATCCCAGGAAAACGATACAAC AACTCAACACCACTGCTGAGGATGGAGTTTTTGTAGTTAGAGCTACAATAGCTGGTATAACTCAGGGAGAGAAATGGTGG TACTCATCTTGTCGCTGCCACAAAGCTGTAAGCACCAGGGATGGGATGTACTATTGTCGCAGCTGCTCTAATTATGTTCT TTCAGTTATTCCATGTTTCCGGATCAAGTTAGAGGTGAATGATGGAGATGCAGATGCTGTTTTTGTGCTATTTGACACTG ATAGTCAGCAACTGTTGTCTAGGAGCTGCCAACAGTTGGTCAACTCATCTAAGGGAAAAGATTCTGATGAATGTCCTACT GAAATAATGAACATTATTGGGAGTGAAATGCTTTTCAAAGTGGAGAAATCAGATGATCGCGCAGAAAAGTTTGATGAGTC ATTCAAGGTGAAGAAGATATGCACTGATCTTGCTGTGATTGAAGCATTCAATGACGAGTCAAAGGTTCAAACACCCCACA AGATGGTTATTGCCGGTAAATTTCCCAAAACATCTGCTGGATTTGAGGATAGTGCTGATTGCTCTGCAGACCTCTCTAAG ATAGGCCCAAATGTTGAGTCTCTTGATGAAATATCAACAGGGGAGGCGTCTGGCCAATGCTCATCTGTGCAGAGCTCTGG TAGTGTTAATTGCCTGCCCAATCCCCCGAAGCGTCTGAAACTAAAGGCTGTCAAATTGGAGCATGAGTAA
Protein sequence (LotjaGi3g1v0278200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPKVFLKKGFLSVYAISNCMGSYSPRLFVIFPHATINSCVGCFTDGSHITDTDGGSYYTGVKIEAIARNNLITKFKNDLL EGKVYRISTFMVSTNSGFFMAANNEFKINLVDKTKAVLEEDPLIPLNMFTFKNSEEIIATGGDYNYLIDIIGLVTNVSKE KQYSKGCGVTRMIEMELTDDKGKIQCALFGNYVDVVKELVASNGYRMAVVILQFVKVKTFKGDVVLQNVMNATNVIWNPT TQEAATFRDGLAIHGIEFDKLIADIADFAEDDDIRVIPLGEEFLTLYPRKTIQQLNTTAEDGVFVVRATIAGITQGEKWW YSSCRCHKAVSTRDGMYYCRSCSNYVLSVIPCFRIKLEVNDGDADAVFVLFDTDSQQLLSRSCQQLVNSSKGKDSDECPT EIMNIIGSEMLFKVEKSDDRAEKFDESFKVKKICTDLAVIEAFNDESKVQTPHKMVIAGKFPKTSAGFEDSADCSADLSK IGPNVESLDEISTGEASGQCSSVQSSGSVNCLPNPPKRLKLKAVKLEHE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 44 | 117 | 74 | 2.7E-8 | – | |
| SUPERFAMILY | 59 | 118 | 60 | 1.5E-5 | ||
| Pfam | 59 | 116 | 58 | 4.2E-8 | ||
| PANTHER | 60 | 450 | 391 | 8.4E-80 | – | |
| PANTHER | 60 | 450 | 391 | 8.4E-80 | – | |
| Gene3D | 123 | 257 | 135 | 5.6E-17 | – | |
| SUPERFAMILY | 135 | 255 | 121 | 5.57E-14 | ||
| CDD | 149 | 248 | 100 | 3.34108E-13 | – | |
| Gene3D | 281 | 449 | 169 | 2.8E-16 | – | |
| SUPERFAMILY | 287 | 417 | 131 | 1.28E-18 | ||
| CDD | 290 | 414 | 125 | 2.7471E-21 | ||
| Pfam | 304 | 441 | 138 | 7.9E-11 | ||
| MobiDBLite | 490 | 511 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0278200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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