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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0281400 |
| Transcript ID | LotjaGi3g1v0281400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT5G59950.5 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8L773|THO4A_ARATH THO complex subunit 4A; TrEMBL-Plants: tr|A0A0L9UNH7|A0A0L9UNH7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0281400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:56288878..56295007) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTAATCCAAAGTGGTCAGTAGCTATGTCTACCAATCATTTTTTAAGAAACTAATCACTTCTTTAGATGGTTGTACAT CACTCAACCATCTTAGAAATAATCTGTCGGGCCTAATTTCCTTTGCTAGGGTTTCAGAATTGGTACATCGTTCTCTTCCC TCCCTCCCTCCCTTAAGGGGGTGAGATGGGGGGTTTCAAGGCCTTTTCTTCTCCTTTTGTGAGCTTTCTTCTCTCCATGG TGAGAGCTTTCCTCTCTCCTGTGTGAGAGTTTTCTATCCTCAAGGTAGGATTTTGTTTTTTTATATGTTCTTTGCTTCCC CTCCCATGTCCATTTCCCTTCTACCACCACCTTCGACCACTAACTGTGACGACCCTTGCATCCCCTTCGTTCGCGACCAC GCTCCTTCAACAACCTCTGTCACACCAGCCTTGGCTTCAACCGTTTTCACCACATTTGTTGTTGGTACCACCGCTTCCTA CCTCAGATCTGAAGTTCTCTGCCTCACCTCCTTTATCACCGTCCATTGTCATCGTTTCTGCCATCAGGTCCGCTGTTTCT CCGCCAACACCAGTTGCTTGCACCTCGCTGTATCAGCCGCCGCCGCAAGCACCATCTATCCCCTTGTTTATTTGTTTTTT TCTCTGTTAGTTTTGTATAGCATGTAGAAGAACCTCTCCTCATATCCTTGTTCAATGTGACGCCGACCAAGACTTCATTG TTGCCGCTAGAGCCACGACGACCTCCCTAGAAGATGCACAACATGTATCCTTGGTAGAGCCGGATGGGTTGCATAAGTTT GGAGCACTGATTAATACTGCAAAAATTTGCCTTTTGCTCAGAAGCTGGTTGGGCTGCTTTTTGAACTAGGAGTTTGAAGA TTTTAATGGCTTTGTGTGGTTTTTTACCTCATGTTTTTAGCTTGATGTATCAGTTAGAGTGTGCACGCTTTTTACTTAAT TGACTTACCTTGTTGCATTGCGAGATATTACTCTTTGGGATCATACTCTCACGTGTAAGTACCATTAGACGACCATTTAA GTGTTAATTAAAGGGACCCTTAATTCAATCATCCTTTCCTTTGAAAAAAAAAGGGTGAGCATCCTTGGCTTAAGAAAAAA CCGTACGGGTTCGAACGGGGACAAAATTTGACTAGGCGGCTCAAAAAAACATTATTATAAGTACTTAAGCAAGGTCATCT TAGATATTTTGTTCCTTCCCAAACTGCTTCCTCTTTTCGCGTAGTCCCACCTGTTTCGTTGATCACCCCTCTCTCTCTCT TCCCCTCGCAAATCCCCTTCTCGCAGAAAACCCTAATCTCCCCCAATTTTCCATCACCTTCCAAATCCCAATCAACCATG TCTGCAGCTCTCGACATGACCCTCGACGACATCATCAAGAAGAACAAGAAGTCCGCACCCTCCAACCCTAGAGGCCGCAA CCGAGCTCCCGGATCCGGACCCGGCCCCGCTCGCCGCATTCCCAACCGCGCCTCCAATCGCGCCGCGCCGTACGCCGCCC CTAAGGTATCCCCCGGTTCGATTTTTTCCGTTTCAGACGGTGCCGCCGTCACAGCAATTTAAATCTCATCGTTTTTTTTT TGTTTAGGCACCGGAGACGGCGTGGGGGCACGACATGTACGCAGATGAACCCGTGCAGGTGGCAGCGTTTCCAGGGCATG GTGGTGGTCGAGCCTCTTCCATCGAAACGGGGACCAAGCTCTACATTTCCAACTTGGATTACGGTGTTTCCAGTGATGAT ATCAAGGTACCAGATCTCGGTTGTTTTGGTGGAACCTGTGTCTGTCTATTTGTTATTTCGCATAACCTAGGGCTTTTAGA TTCGAATTTTAGGTTTTCTAGCTAGATACGTGAATAATTGAATCTCGAAATTCCCTTGATTTGCTCCTGTTTTGTTACAT CTAGAATATTTAATCACGGTTTACTCGCAGAGATTGGCCAAATTAATTGTGATGTATGTTCGCGTAGATTCACCTATTAA TCATGATGTATGTATTCTTAAGTAGGTATCTAGCTATATCTTAGTTTGTATTTGTGAAACTTTGATTTCAATTTGTCTTT ATTAGTTTATTTCCTTCTGTAATTTTCCTTTTTGTTTACAAGTATAAAAGATCTGGAACATGTATGCGTATTTGTCAACA ATGAACGCATCTATATAGGTTTAGGGTCCGTATGAGTATGAAATAAATTCAAATCAATTAATAGCTGTTAGTAACTTCAT TTGCTTTTTGTTTTGAATTGAATGATGCTATCTGCTAGATGCGTGCTCGTGCTTCTATAGTGCGTATGCTCTAGTTAGTG ACTTCATTCCCATCCTGTTTGAATCATTTCGCTAACTGCGAAATTATGAAGTGTTTATCTGCATTTGTGCCTTCGTGTGT GCACAAGTTAGTTATTGCTGTATTATAATAATTGGTTTGTTTCTTATAAAATGAGTTGTTTTGTAGCAGTTTGGTGTGCG GGATCGTTAAGACTGTCTTTTTCACTTGCAGGAATTGTTTTCTGAAGTTGGTGACCTGAAACGGCATACTGTTCATTACG ACAGGAGCGGGAGATCGAAGGTATCTTGTCCAGTTGGCATAATATGGTCCCTCTGATCAATTCTTTGTGTGTCCTGCTGT AGTTTAGAAAAACTCTTTTTCATAGGGTACTGCAGAAGTAGTCTTCTCACGACGAGGTGATGCTGAAGCTGCTGTGAAGA GATACAACAATGTTCAACTAGATGGGAAGCCGATGAAGATAGAGATTGTGGGCACAAACATTACTACACCTGCTGTTGCA CCTGCTGCAAATGGAGCTTTTGGAAATTCAAATGGTGTTCCTAGAAGGTATGCATTAATTGGTTTGTGCTCGTCAGTTAA CATGTTCGTCCTTGATCTTATTTGAAGTGTGAAGCTTTCCTGTAGTTTTTCCTTCCTTGAATCCTGTTTTATGATGATTA TATTATTTCCTTATTGCAAAAAATTCTCAATCTCCATATTTAGGGTTGTTTTAAAGAAGGCTAAAAAGCACTTTTGGCCC CTGATGTTTCAAGTTTGTGCAAATTCTGCCCCTACTCTATTTTTGTCGATGTTTCTACCCCTCATGTTTTCAAACAGTGC ATCGTCTACCCCTCATGTTTTCAAACAGTGCATTGTCTACCCATGACGGAGGGGTAGACGGTGCACTGTTTGAAAACATG AGGGGTAGAAACATCGACAAAAATAGATAGGGGCAGAATTTGCACAAACTTAAAACATCAGGGGCCAAAAATGCTTTTTA GCCTTTAAAGAATTATGTGAAGTTTACTAATTTGACTTCGAATATTGATATCTAAAATTTGGAAATCAACAGATACCTTA GAGCGTCATTCTGTTGTCTCTGTGTATGTTTGAGTTTTGATTGGACAGAGGATTAGTCAATTGGAATTTGTGTTGTACCA TAGAAGATGATTGGGTGCAAGGAGATCTTAGGTTGATAATTTATGTGGTGTTTAATTTCCCTCAGAATCTGTTTTAGTCC TTTCTTATTTAAATTTCCATGTCCTGGACTTGGCCTTATAACTTGAATTCTTTTGAGATGCATCATGCCATGTGTTTTAG TACAAATCAGAAAGTAATTCCTTCTAGTATTAACGCTGCACCTGTTTTACTGATTTGGCTTTTGAACAGTGGACAAGGTA GAGGTGGGGCATTTGGAAGGCTGCGTGGTGGTGGTGATGGAGGACGAGGGCGTGGCAATCGCAGAGGAAGAGGACGAGGA CGAGGGCATGGAAGGGGTCGTGGTGAAAAGGTATCTGCAGAAGATCTTGATGCTGATTTGGAGAAGTATCATGCTGAGTC AATGCAATTAAACTGAAGAATCACCCATGTTCTGTTTTCTTGCTATTACCTTTCCGGTCTTTAAGGGCATGGTGATGGAC ACTGCCTAGTTATGTATTTTTATCACAGACACTTTTACAGAAAGGGGAAAGCTCTTGGAGTGAAAACTTTTACCAATGAT ACATGTAGTTTGGGATTGTTAGCAAATATTTATTTTCATTGGGTATGATATGACTATGAAACATGGGTGAAGAGACAGAG GTCAGCATGTATTATGCGCTCGTGCTTCCTTTCATTCTCTTTAATCGTTACTTTATTCAACAAATGGGCATGGAAGTGGG AATCATGATATTGTCTATCCATGCACAAAGAAAGCTATTGCTGCAAAATGTGGGAGGCTGCAGAATTCACCCACAGTTGC TTTGTGCTTTGGGTAGATTGTGACAGTGGAGTCTTCAGACAAGGTAGATTCCCTGCCCTTGTTACCTCTTCCCCCTTCCC CAGAAGAAAAGTAATTATGTGATTTTCTTTGGTAGTATCATTTGTCCTGTGCTATAAATATTGTCTTGGTTGGTATAATC TAATATATTAGTGAGGTTTTCTTATGCTCTAGGGGAAGTGATTTTTCTCGTCTGTTTTGGTAATTTTTGCATATTAGTTA TAGTGAGATGGATTCTGTCATCTGTTCTGCTGTTGGGCACTGGTCAAGCTAAGAACATGTCAAGAGGTGATGAACCTTCT GGGATAGGGATGCTGCAGGGTATTTCTGTTATGTTCGCTCTGTTGCATTCTGGCTAATTTGTCGTGTCCCGAGTACTGTC CATTTTTTACCCGACCTTTGATCTGAAATTCTCACAATTGTCATCGGTTTGAAGTGCTGGTCTTTCTTATAGACCTACAT TTCACTGATAGGAACTGAGATGTGCATATGATGGGAAGCCGAGTGGAAGTTCTTTATTATTTGCAAGTTCGAGTAGTTTT TAATGCTACAGTCAAACATGAACTCATGGGAGTGGTAAAGTTACTTTCGGGATATTTTCTTGTTGGCTTGCCAGCCACTT TACCTCTGGGGAATATTTCTCCTCTGGAAGAGAGTTCTCTGGACAAGCCAAAAGCTAATAATTGACTACATAATATAACT GTCTGCTTTTTGAGCTGATTGGATTGCTAATTTGATTTTTCAAATCGGGAAGTGATGGATTTCCTTTGCATTATGAAGCT CCTACTCTGGTGATAATTGCTGCTATCAGCCTGTAGATTGTTTTTTTTTTACTAAGCTTCATGTCGGTGGATGTTCTTGT GGCTTTTATGTGTTATTTGGATGTGAAGCTTTCTATTATAATTTGTTGTAATATTCCGGGTTTGGTTGCTTCAGAAGTAT TTATTTTACCAGAAAAATGTACATAAGATTTTGAAATTCTGGTCTAGTTTTAGTTGTCCGTTTTGTAAAATGGAATTATT AGCTATTCCTTGGTGTCTAAAAGTCAAGTGATCATTTGATATATTCACATCTACTTTCTCTTTTACTCATTTTTATACCG TATCATCATCTGTATTTATCACTTTCTCTACTACCATATCTTTCTTCGGGGTGGGATTTGGATCCCCTCATGAATTGGGG TATGTAAAGCCAAGCCATATTATTTCCTTACGAAGAGACATTATCCTTGATGTCAAATTAGCTTTGAGGGTAAAGGTGCG AAGATGGGAACATTTTCCTCGTCCATGGTGCAGTTTATTCTTTTATTAGTTCCTAAAAGATATTGTTTAGCAAGATATAA TTTTATTAATGGTAGGTGTATTATGTATGACTTGATTTATTTAACGAAGTAGTTATATCTAAGTAATCAATGTGATTCAA TTTTATTATATCCTCAGTAAAACAAGTTTATTAAATGATTGGCCTAACCATCTTCAATAGTCTCAAAGTTCCGATGGTTC CTTCAGCATTTGCAATTCCCTCGGTAAGAAATAAAAGGGATTTGATAGAGACACTTAAAAACAACGCATTAAAAGTTTGA TCAACTGTGAAGATCTTGCATAGGCAACTTATTGAGTTGGTTGGCTATAATGTATCCAAGCTAGCTAGGGGCAGTTGAGC TTCATGTCAAGCTTGGTGTAAGGGATCACTTAATGGCGGATGTTAAGTGTTTGTGGCTGGCTTGATGACCACCTGAAATG ACGGTTGAGCGTTGGGTGGGTTAGATGGGTGGAGCTCAATGGGTAGAGTTTAAGTGTTTGTGGGCGGGATTGATGACCAC TTGAGATGATGGTTGAGTGTTGGCTGGGTTTCGAATGAGCGGAACTCATT
CDS sequence (LotjaGi3g1v0281400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGCAGCTCTCGACATGACCCTCGACGACATCATCAAGAAGAACAAGAAGTCCGCACCCTCCAACCCTAGAGGCCG CAACCGAGCTCCCGGATCCGGACCCGGCCCCGCTCGCCGCATTCCCAACCGCGCCTCCAATCGCGCCGCGCCGTACGCCG CCCCTAAGGCACCGGAGACGGCGTGGGGGCACGACATGTACGCAGATGAACCCGTGCAGGTGGCAGCGTTTCCAGGGCAT GGTGGTGGTCGAGCCTCTTCCATCGAAACGGGGACCAAGCTCTACATTTCCAACTTGGATTACGGTGTTTCCAGTGATGA TATCAAGGAATTGTTTTCTGAAGTTGGTGACCTGAAACGGCATACTGTTCATTACGACAGGAGCGGGAGATCGAAGGGTA CTGCAGAAGTAGTCTTCTCACGACGAGGTGATGCTGAAGCTGCTGTGAAGAGATACAACAATGTTCAACTAGATGGGAAG CCGATGAAGATAGAGATTGTGGGCACAAACATTACTACACCTGCTGTTGCACCTGCTGCAAATGGAGCTTTTGGAAATTC AAATGGTGTTCCTAGAAGTGGACAAGGTAGAGGTGGGGCATTTGGAAGGCTGCGTGGTGGTGGTGATGGAGGACGAGGGC GTGGCAATCGCAGAGGAAGAGGACGAGGACGAGGGCATGGAAGGGGTCGTGGTGAAAAGGTATCTGCAGAAGATCTTGAT GCTGATTTGGAGAAGTATCATGCTGAGTCAATGCAATTAAACTGA
Protein sequence (LotjaGi3g1v0281400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAALDMTLDDIIKKNKKSAPSNPRGRNRAPGSGPGPARRIPNRASNRAAPYAAPKAPETAWGHDMYADEPVQVAAFPGH GGGRASSIETGTKLYISNLDYGVSSDDIKELFSEVGDLKRHTVHYDRSGRSKGTAEVVFSRRGDAEAAVKRYNNVQLDGK PMKIEIVGTNITTPAVAPAANGAFGNSNGVPRSGQGRGGAFGRLRGGGDGGRGRGNRRGRGRGRGHGRGRGEKVSAEDLD ADLEKYHAESMQLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 57 | 57 | - | – | |
| PANTHER | 4 | 254 | 251 | 8.4E-91 | – | |
| PANTHER | 4 | 254 | 251 | 8.4E-91 | – | |
| SUPERFAMILY | 30 | 166 | 137 | 1.49E-23 | ||
| Gene3D | 80 | 172 | 93 | 8.2E-23 | ||
| CDD | 92 | 166 | 75 | 7.58688E-46 | – | |
| ProSiteProfiles | 92 | 169 | 78 | 16.244 | ||
| SMART | 93 | 165 | 73 | 1.3E-18 | ||
| Pfam | 94 | 162 | 69 | 1.9E-15 | ||
| MobiDBLite | 183 | 254 | 72 | - | – | |
| SMART | 185 | 254 | 70 | 1.4E-11 | ||
| Pfam | 193 | 250 | 58 | 3.7E-9 | ||
| MobiDBLite | 228 | 247 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0281400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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