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LotjaGi3g1v0283200.1

Overview

Field Value
Gene ID LotjaGi3g1v0283200
Transcript ID LotjaGi3g1v0283200.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Epsin; TAIR: AT3G46540.1 ENTH/VHS family protein; Swiss-Prot: sp|O95208|EPN2_HUMAN Epsin-2; TrEMBL-Plants: tr|I1MDF6|I1MDF6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0283200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:57011906..57019730) extracted from Lotus japonicus Gifu genome v1.2.

CTCTAACTTCAACGAAGGAAGGCAAGGCCCCATGCAATGAGTTCATAGATTTGACTTTGCAGAGCCACGTTTACAAGAAT GAAAAACATATTAACAAATGAGTGAAATGACAATTTGACAAAACATGGTGTGTGCAAATTACAATTGTCTACTCCAAATC CACATGACTCGTATTTCAAATTCATTATTCAGAGTTTCACACAGCATGGTCCATCAGCTGTTAGATCAGATGTATGTGTA AATGAGTTTTACTATGGCAGTGTATATACATTAAATTCAAGAGAACAAGCTTAATTGTTGAATGTTTTACATAAACTTTC ATATATCAAAGATTAAGATGTTTTAATCTTAGACCTTGAATCCCCCATATGAAATTAAGAGATTAATCCCATAACAGTAG AATATTTACTATTAAAATAATCAGTTACATGCCTGCCATCTTAGATTCAACGTTTACCAAAGTGGATACATGGACACCAT CATCTGATAAACTCAGTTGTCTCCTCATAAACCCAAGCCAACTCCAAGAAACAGATTCTGGATCTCCTCATTTTCTATCT CCTTTCCTCTAGCAAGGGAGTAACAAAGTTTAGATATGTCACTCCAGTTGAACAAGAACAACAGCAGCAACACGGGAACA CCTTTGTTCCATGTATTTAAGAAGCAAGCTTCTTTCTTCTTCAAGGAGCAATTCAAGAGTGCTAGATTAGCTCTCTCTGA TGTCACCCCTGCACAACTGTAAGCTTGTCACTTTTATGACTCCATCATAAGATTTTTTTGACATTTTAATTAGCTTTAAT GGGTTGTTTTACAGCCAAAGCAGCTCTAGTTTTGTGATATATAGAAACATGGATTAGATGGCCTTTTAATATTTGCAGGA TGACAGAAGAAGCTACAAATGGAAAAAATCCATGGGCCCCAAATTCCCCATCACTCAGATCAATTTCAAAGGCTGCTTTT GAGCTAGATGATTATTGGAGGATTGTAGAGATTCTGCACAAAAGGTGTTCCAAATACTTTTTTTGTTATTGACCTTTGCA TTATTTATGTTAATCATCTAATCATGGATGAATGGGATCATTGTAAAACAGACTGCTTAAATTTGACAATGGGAATTGGA GGGCCTCTTACAATTCTCTGATTGTGCTTGAGCACCTGTTGACTCATGGACCTGAAAGTATTGCAGAGGAATTTCAGAGT GACAAAGATGTTATTAGTCAGATGATAAACTTTCAGTATATTGATGACAAAGGGTATGTTTTCTCCAATTCTTAATCTAA AATCATTTTTAGAATTTGGACTAGGTCTCTACCCCAAAGTTAGCTCAACCATGATGATTGCTCTACTTCAACCCATTGTA AGAACTAGTTTGACCACATCTCTAATGAATCTAGGACCTTAACAAATCACTCACTGCTCATGAATTTTATTTTCTTCTTG ACACTGGCGCATGGCGCTGGGTGTGTTTGGTTCCACGTTTGGGAGTCCTATAATAAATTTCTATTGATCAGAATCACTTT AGGTGATTACCTAGATGCTTGACAAACTATTTAGAGAGCTGACCTTAGTCCCAAAATCAATTCTAGAAAAAAACTAGAGA AAGTAGCTTCTGTGGTGGACATAACCCATTGCGATATTTCATAACAGGATTTCACAGTAGTGTTACACAGATCACTTTTC AAATAAACATACGCAAACATAAATCACTTCAATTTAGACTTACTTGAACTCAGTTTTACCATAATCAATTATAGACAACA GTGGTCAAAATAGTGAGGTCACTTTGAGTATTTGCATGCAGGTTCAACTGGGGCCTAATTGTTAGAAAGAAGTCAGAGAG GATATTGAAACTTATGGAAGAAGGAACTGTACTTAAGGAAGAAAGAAACCGTGCTCGAAGGTTGTCCAGAGGAATTCAAG GTTTTGGTAGTTTCTCCAAACGACCAACTCCAGAACAATGCATTCTGCAGGAAAAATCTTTGCCTGACACATTTGGCCGA TGTAACTTTGAATTCAACAACCATGAAAATCAGGAACACCAGTCCTCTTTCTCGAACCATATTCTGGAAACAGCAGCAGT TAAGTCTCCTAGTCTTAGTCATCATGGGGGAGTTCTCAATTCAGTGGATGGTGTAGGAACTGAAAGCTACATGGATGATC TGAGAAACAATGAAATGCTCAATGAATCTGACACAAGCTCTAATGAAAACATGATTCCTGGCAAGGAGGTATGCCATCTG TGGAGCCTGAAAGGGGAGTCCAGTCTACTTTTGGAGGGTAACCAAGAAGATTCCAGAATCCAAACATTCATAGCAGAAGA GGATCACCCCTTTAGCTCAGCAGAACTGCATTCCACTTCTTCCCTTCTTTCTTCAAGATGAAGAAAGTCCAAGATTGAAA TGAAGGCAAGAAAGTGCTTGCAAATAGAGTAATGTGAGTAACACGCTCTTCATGATTGGTCTATTTTTAAGAAAGTCACC TCATTTTTGTAAACAAGTAATAAATTTATGAGGTAGATGTATGAACTTTTTAAAAATATACTAATCATAAAGAGTGTATC CCTAGTATTTCTCTAGAAATACCATTGTGATGAAGATTTTATGGCACATGTATTATGTATGTGGCTTACCTTTTATTTCC TGCTACAATTTTCCCCTTATGAACAAATCGTTTGTTAGGGTGAGACTAGAACTAAGTATATTGAAACGCATATATCTATA TTTAAAGCGAATATTTGACCTTGTTCTTTCACTGTAAACATCACATAACATGTTCAAGGCGCTTAAAGGATCATCTGACA TGCAGAAATTATTTTTAGCTTGGCAAAAAAATAATTTTACAAGGTGATAAAAACAGAAGATCCAAGCAACACAAGGTTAA ATCAAAGACCCCTAACAAAAGATTTCTTATGTTTTAACTTGGCCTAGCCAAATATTGCTTATTTTGGACAAATGCATCTT ATTTATTCTTCTGAGCTAAAGGTTAACGTAAATTATAGACATCCAAGCAATTTGCCAAGATTTCAGAAATTCATAATTTT ACAAGATCAGGAGCATCTAGAGAGTAGACACATCTCCGTAGAAAATCCTATAAGCTCCAGACTCATCTTCATCCTTATGG GACTAGCTCTCCTTACAGAAATTTTTTCCATACACAAGACTCGAACCTAAGACCATGCTTAAAGAGAATCAACCATGTAC CAGTTGAACCAACCACTCTTGGTCTCCTTTTTTCTTTGTTCTCTTGCCAGGAAATCGTGGCCAAAATACAATCTTTTACT CTACTTGAATTGCGCAACATAGGCAATTTCTGCCAACTGCAGTTGGGATCAATCAAATTGACAATAACTTGTGGGACACA GAAAGATTTACAACAGGAGAGAAAAAAACCGTAGAACTAAAACAAAACTAGATCAAAACTTATGGGGGGAAAAGAGCACT TAATCTAGATGAATTGATGAACCTTCAATATTTGCAGAGCCAATCTTGGATGGCAAGTCGAACCGCGTGATTGGGAGTGA GAAGCAGGTGATTCAATTTTAAATTAGTCATGGGAGAAGTATCATGCCCATTTTCCAACCATTCACGTATGGCGTCCCCT TCATAGGTAAATCCATCTTCTGCAATTTGAGGATCATGCATTATTTCCTGAAAAGGGAATCCAATATGAAACATAATTAG TACAGGACACAAATTTAACTATGACTATCAGCTCTTAGAGGGAGGGAGTATTGAACAGTCATGTTTTTTCATTAACAAAA AAGAATTTGTTACCTGAAGGATTGGACATAAGAAAAAAGATGGCACAGGTCGCTCTTCTGAAACATGCAACTGCTCTAAT TCTCTTACAAGAGTAGGTGTTAACTCTGGCCTGTCTCTACGATTTTGTTGGCAGCATTGCAAACCCAGTTCGACCAGTCG TGTTGCCACAGCTAAAGGCCATTCTCCAGCTGAAGAATCAAGAATTGAAGACAAATTTCCACATGAAATCGCATTGCGAA CTAGAACTGCTAATCCAACTGGAGTCCTACCAGTGAGGAGTTGCAAGATAATGAGCCCAAAGGAGTAGATGTCAGACTTG GGTGTTAGTACTCCAGTTCGCTGAAACTGTGGATCTGTATACGAGTGAGCACTCTTCATCTCTGAGCTAAATTGGAAACT AGGACGATAGAGAGACTCCTCTGTCACCAGCCTACTGAACCCAAACTCACAGATCTTGCAACTAAGTGAAGAATCAAGAA GTATAGTTTCAGGCTTCAGATCACCATGGATAATAGTTTCAGGTTTAGAAGAATGTAAGAAGCAGAGCGCACTAGCTATT TCTGCAATCATTCGTGCTCGGATCTTCCATGTCAAAGGGGAATTGTTGCTTCTTCGAAATAGGTAGTCTTGAAGAGTTCC ATTGGGGAGGTACTCGTATACAATTGACCAGGCTTCAGTGCAAACACCAAGCAAATTCAATAAATGAGGATGCTGGAGCC TACCAAGAACTTGAACCTGCTCACAAAGGAAAGCATTAGTTGAATCAGAGAAACACAAGAAACTGAGAAATTTTACCCCA CATTTCACCTTTTTATTGCGCAGAAAGAAAGAAAAAACACATTGAAATTTGAAATTCAAAGGCATCAAAATCATGTTTGC AGCTCCAATTCTCTCAAGCCATGCCTAAGCATTTTAAGATAACAATTTTTAAAGCAGAAAGACCAATGCGGTAGAACTGA GTACTGACCTCTTGATGAAACTCTTCTGGTCCTTGCACGTTTTGCTGGTGGAACTTCCTTATAGCAACAGTCCTACCCAA CATTTCCCCCTTATATATACAACCAAATCCACCTTGCGCGATTTTAAAGCTCTTGGAAAAATTACATGTGGCATTTTGAA GATCTGATAATGAAAATTCTGCAATCTCAGGTAATTCTTCAGCAAACCCAATGGCCCCATTGTAATGAGCTGTTCCAACC TGTCCGCGACTTTTCCACCGCTCAAGCCACCGAAGAGCTTCCATTTTCTGTCTCCTGATCTGCTGCCTTTCTTGCCACAG GGTTGAGATGGATGCTTGAATTAGTGATAGTTCATATGCAACTTCATCTCGCCTATGGGTTACTTCCTGAGCATGACTAT CTAGTTGGGAAATATTTCTCATGGTCATTTGTAGCTTACCAGCAATACTTTCATTTTCATCCGAAAGCTTTTGTTGTTCG AGTACCGTAGCTCTAAGTGCATCCTCAGCCTCTTTTCTAAGTTTTACTTCACATGAATGGGCTGATTCAAACAACTTGAC CTGAAGATACAATAAATAATTTAGTTGGGAGAGATGTCATATTACTAAAAAATCAATCACACTATAGACACAGTAACATC ATTTGACACTTATTCGGAAACATACACCTCAATCACATAGCATGATGTCCGACAAATTTCTGAGCAACACATTCAAACAA ATTAGTGAGCGTGGGCAAACCAGTTAAAAGTGTTTCTTCTTCTACTATTCTGACCTGAAAATGTTATGTTTCAGAAACTT GTGTCCAGAATCCCATCATTTACAGAAGGATTTTCTCCTGCTGTAATCCTTTGTCAAAGTTTCTTAAATCCTTAAGAAAG TATACTCAATGTCTAATGACTAATAAGAGAAATAAAAAGACCAGAAATGTTTTTGTTAACAAAAGTCCTAAATGATGTAA AGCCACTAGATTGTGCTTACCTTCCTTATGGCCTCCATGGCCTCTACTTCCAACCTCTTGCACTTTAATAGCTCTGCAAA TGCCTCACCTTTTGCTGCCTCGGCTTCTCTTTTGGTTTCAATAAGTTGACTATTAACTCTTTCTTCCATGAACTCAGAAT GTGTATCTAACCAACCCCCAGCAGCATTTTGCGGGGAACAATGACTGCTACAACTGGTTGATTTAGATGAATAAGTAGCT TCAGTTTCAATGATTTCACCCTGATCCCAACTTCTAATTCCAGAACATATTGTAGTTCTTGCAGAATTTGGTTGGAGATA TTCTGAGTGGGATAATTCATTCTCACCATAGTGAAAAGATCGAGATCTCAAGCTGTCTGCGGCTGCAATCTCAGGTTGAG CACTTGAAGTCAATGAACTTAGTGTTTCAGAAGCCTCTCTTGTCCAAATGTGTTTACCTTTATAGATAAACCATATCTCA CAGAATGAGGGAGCATTTTTAGCAGCGTAATGTGCTTTACCGGAATTCCTTTTCACATTCATCCAACTGCAATTTCCCAT TATGAGATTGTAAGTGGAAAGATTGATTTATCTCTTCAGTGAAAGAAAAGGGGGAAAGAAATAGAAAAGAACAGAAATCA CTGAAGCAGGATGTATGCTTCAAATTATCAATAGAAGACACAACCAGTTTTGGCAGTAGACATAGGGATACGAAATACTT GAAGCTCAAAAGAATAAAATCAACTTTTTCCAATCCACGGGACCTGGTCTAAAAGAATGAAACTAAGAAACACTTGAGCC ATTTTGAATGCACACTAACAAGGAAGTTTTACACAGAAGCACAAGCAGAAAAGTGAGAAAACCAATCCATTACTTACTTT TCTGGTGCTGCACCAATCACAAGCTTCCTAACATTATGCCTAATAACCAGATCAACAATTCCTTTTTGAACCTGGTCAGC TTCAGTTACAATAGTGCTAGCCTTAACCTGATAAGAAACTTATGTTAACACAGACAACTAATAAAGGGCAATCGCAAAGA GCAAACTTTACTATAAAGAAATCAGCTATTATGAACTACCCACCTATCCAAATCCCACAATTTTTTTACAGAGAAGACTA TAATGCAGAACATAACAACATGTAAAGGGGGGAAAGAAACAAAAACCTTAGCTGTGCGACAAATGCTCAAGTACTTGTCC ATGAGCATCGTGGTCTGTTGTTTTTCCTCTCTTCGAAAAGCAGACACAGTTTCAGGATTAGCCTGAGTTGCTAGCATTTT CCCCACTGCTCAAGAGTCAAGATACCAAAATTGAGCAAAATAAGCCAAACTTACAAGAAGAGACCGAATAACAATAGGTG CAACAAGAAGTGAACTTTGAAATTGAAAAGTGAAGAAATTGAGCTTACACAAAGTGGGTATGAATGGAGAAGGTTGATAA GCATGGATTAAGACAATTTCTGAATTGGGAAAGTGGTTGAAAGTCCATTGAAGCAACGTGGCGGCTTTGTCGAGCGATTT CCCGACAGCGACATGAACAACGACAACAGGGTTGGAAGGAGCAGCAGCGCGTTGATGCATAGTTGGAGGAGGAGAGGAAG AGGGAAACGGGTGAAAGTGAAGGTGCAGAATGGATGTGGGTGAGTGGTGGCGGCGGCGGTGGTGGTGGTGGTGAGGAGGG TTCAAAAGCTCCATGGGAAGGAAGAAGAATTATTGGCGGAGGTGGTGGTGGGGCACCAGCAGAAGCAGTGGTGTGGTGGG TGGGAAGAGAAGAAGAAATGGTAACATCATCATCAATTCATCATCATGGTGTGTTTTCTTCTTCTCTCTCTCCTCTGTGA AGCATAGAGGAAGAAGAAACGAAGGAACAAGGTTCTTTGACTTTTTTGGAAATGTTGACTTCATGAAGCACAGTTGGTCG GAGGAGTGGTTTCATTTTTCTACGGCGGTGAAAAGTGAATCAAACAGGACAGGACACCAGATGATCAGAGAAAGGAGGGA ATTTGAAAAATCACATTCACTTTTTTACTTTTTATTCATATATTTTATATATTTAAATTTATTTTAGGAGATTTTTAATC TCATTCACTCCACAGATCCATGGTTGAAAAACACTTTTCTCACCCTCACATAAAAAACCTCATTA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0283200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCACTCCAGTTGAACAAGAACAACAGCAGCAACACGGGAACACCTTTGTTCCATGTATTTAAGAAGCAAGCTTCTTT CTTCTTCAAGGAGCAATTCAAGAGTGCTAGATTAGCTCTCTCTGATGTCACCCCTGCACAACTGATGACAGAAGAAGCTA CAAATGGAAAAAATCCATGGGCCCCAAATTCCCCATCACTCAGATCAATTTCAAAGGCTGCTTTTGAGCTAGATGATTAT TGGAGGATTGTAGAGATTCTGCACAAAAGACTGCTTAAATTTGACAATGGGAATTGGAGGGCCTCTTACAATTCTCTGAT TGTGCTTGAGCACCTGTTGACTCATGGACCTGAAAGTATTGCAGAGGAATTTCAGAGTGACAAAGATGTTATTAGTCAGA TGATAAACTTTCAGTATATTGATGACAAAGGGTTCAACTGGGGCCTAATTGTTAGAAAGAAGTCAGAGAGGATATTGAAA CTTATGGAAGAAGGAACTGTACTTAAGGAAGAAAGAAACCGTGCTCGAAGGTTGTCCAGAGGAATTCAAGGTTTTGGTAG TTTCTCCAAACGACCAACTCCAGAACAATGCATTCTGCAGGAAAAATCTTTGCCTGACACATTTGGCCGATGTAACTTTG AATTCAACAACCATGAAAATCAGGAACACCAGTCCTCTTTCTCGAACCATATTCTGGAAACAGCAGCAGTTAAGTCTCCT AGTCTTAGTCATCATGGGGGAGTTCTCAATTCAGTGGATGGTGTAGGAACTGAAAGCTACATGGATGATCTGAGAAACAA TGAAATGCTCAATGAATCTGACACAAGCTCTAATGAAAACATGATTCCTGGCAAGGAGGTATGCCATCTGTGGAGCCTGA AAGGGGAGTCCAGTCTACTTTTGGAGGGTAACCAAGAAGATTCCAGAATCCAAACATTCATAGCAGAAGAGGATCACCCC TTTAGCTCAGCAGAACTGCATTCCACTTCTTCCCTTCTTTCTTCAAGATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0283200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSLQLNKNNSSNTGTPLFHVFKKQASFFFKEQFKSARLALSDVTPAQLMTEEATNGKNPWAPNSPSLRSISKAAFELDDY WRIVEILHKRLLKFDNGNWRASYNSLIVLEHLLTHGPESIAEEFQSDKDVISQMINFQYIDDKGFNWGLIVRKKSERILK LMEEGTVLKEERNRARRLSRGIQGFGSFSKRPTPEQCILQEKSLPDTFGRCNFEFNNHENQEHQSSFSNHILETAAVKSP SLSHHGGVLNSVDGVGTESYMDDLRNNEMLNESDTSSNENMIPGKEVCHLWSLKGESSLLLEGNQEDSRIQTFIAEEDHP FSSAELHSTSSLLSSR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12276
16 335 320 1.8E-91 –
PANTHER
PTHR12276:SF97
16 335 320 1.8E-91 –
SUPERFAMILY
SSF48464
24 172 149 9.35E-36
IPR008942
ProSiteProfiles
PS50942
38 172 135 31.814
IPR013809
Gene3D
G3DSA:1.25.40.90
40 187 148 1.0E-41
IPR008942
Pfam
PF01417
44 164 121 1.4E-26
IPR013809
SMART
SM00273
44 172 129 1.2E-17
IPR013809
CDD
cd03571
46 163 118 5.41403E-46 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0283200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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