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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0283200 |
| Transcript ID | LotjaGi3g1v0283200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Epsin; TAIR: AT3G46540.1 ENTH/VHS family protein; Swiss-Prot: sp|O95208|EPN2_HUMAN Epsin-2; TrEMBL-Plants: tr|A0A151SUR4|A0A151SUR4_CAJCA Epsin-3; Found in the gene: LotjaGi3g1v0283200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:57017026..57019246) extracted from Lotus japonicus Gifu genome v1.2.
TGATAAACTCAGTTGTCTCCTCATAAACCCAAGCCAACTCCAAGAAACAGATTCTGGATCTCCTCATTTTCTATCTCCTT TCCTCTAGCAAGGGAGTAACAAAGTTTAGATATGTCACTCCAGTTGAACAAGAACAACAGCAGCAACACGGGAACACCTT TGTTCCATGTATTTAAGAAGCAAGCTTCTTTCTTCTTCAAGGAGCAATTCAAGAGTGCTAGATTAGCTCTCTCTGATGTC ACCCCTGCACAACTGTAAGCTTGTCACTTTTATGACTCCATCATAAGATTTTTTTGACATTTTAATTAGCTTTAATGGGT TGTTTTACAGCCAAAGCAGCTCTAGTTTTGTGATATATAGAAACATGGATTAGATGGCCTTTTAATATTTGCAGGATGAC AGAAGAAGCTACAAATGGAAAAAATCCATGGGCCCCAAATTCCCCATCACTCAGATCAATTTCAAAGGCTGCTTTTGAGC TAGATGATTATTGGAGGATTGTAGAGATTCTGCACAAAAGGTGTTCCAAATACTTTTTTTGTTATTGACCTTTGCATTAT TTATGTTAATCATCTAATCATGGATGAATGGGATCATTGTAAAACAGACTGCTTAAATTTGACAATGGGAATTGGAGGGC CTCTTACAATTCTCTGATTGTGCTTGAGCACCTGTTGACTCATGGACCTGAAAGTATTGCAGAGGAATTTCAGAGTGACA AAGATGTTATTAGTCAGATGATAAACTTTCAGTATATTGATGACAAAGGGTATGTTTTCTCCAATTCTTAATCTAAAATC ATTTTTAGAATTTGGACTAGGTCTCTACCCCAAAGTTAGCTCAACCATGATGATTGCTCTACTTCAACCCATTGTAAGAA CTAGTTTGACCACATCTCTAATGAATCTAGGACCTTAACAAATCACTCACTGCTCATGAATTTTATTTTCTTCTTGACAC TGGCGCATGGCGCTGGGTGTGTTTGGTTCCACGTTTGGGAGTCCTATAATAAATTTCTATTGATCAGAATCACTTTAGGT GATTACCTAGATGCTTGACAAACTATTTAGAGAGCTGACCTTAGTCCCAAAATCAATTCTAGAAAAAAACTAGAGAAAGT AGCTTCTGTGGTGGACATAACCCATTGCGATATTTCATAACAGGATTTCACAGTAGTGTTACACAGATCACTTTTCAAAT AAACATACGCAAACATAAATCACTTCAATTTAGACTTACTTGAACTCAGTTTTACCATAATCAATTATAGACAACAGTGG TCAAAATAGTGAGGTCACTTTGAGTATTTGCATGCAGGTTCAACTGGGGCCTAATTGTTAGAAAGAAGTCAGAGAGGATA TTGAAACTTATGGAAGAAGGAACTGTACTTAAGGAAGAAAGAAACCGTGCTCGAAGGTTGTCCAGAGGAATTCAAGGTTT TGGTAGTTTCTCCAAACGACCAACTCCAGAACAATGCATTCTGCAGGAAAAATCTTTGCCTGACACATTTGGCCGATGTA ACTTTGAATTCAACAACCATGAAAATCAGGAACACCAGTCCTCTTTCTCGAACCATATTCTGGAAACAGCAGCAGTTAAG TCTCCTAGTCTTAGTCATCATGGGGGAGTTCTCAATTCAGTGGATGGTGTAGGAACTGAAAGCTACATGGATGATCTGAG AAACAATGAAATGCTCAATGAATCTGACACAAGCTCTAATGAAAACATGATTCCTGGCAAGGAGGTATGCCATCTGTGGA GCCTGAAAGGGGAGTCCAGTCTACTTTTGGAGGGTAACCAAGAAGATTCCAGAATCCAAACATTCATAGCAGAAGAGGAT CACCCCTTTAGCTCAGCAGAACTGCATTCCACTTCTTCCCTTCTTTCTTCAAGATGAAGAAAGTCCAAGATTGAAATGAA GGCAAGAAAGTGCTTGCAAATAGAGTAATGTGAGTAACACGCTCTTCATGATTGGTCTATTTTTAAGAAAGTCACCTCAT TTTTGTAAACAAGTAATAAATTTATGAGGTAGATGTATGAACTTTTTAAAAATATACTAATCATAAAGAGTGTATCCCTA GTATTTCTCTAGAAATACCATTGTGATGAAGATTTTATGGCACATGTATTATGTATGTGGCTTACCTTTTATTTCCTGCT ACAATTTTCCCCTTATGAACAAATCGTTTGTTAGGGTGAGACTAGAACTAAGTATATTGAA
CDS sequence (LotjaGi3g1v0283200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAAGAAGCTACAAATGGAAAAAATCCATGGGCCCCAAATTCCCCATCACTCAGATCAATTTCAAAGGCTGCTTT TGAGCTAGATGATTATTGGAGGATTGTAGAGATTCTGCACAAAAGACTGCTTAAATTTGACAATGGGAATTGGAGGGCCT CTTACAATTCTCTGATTGTGCTTGAGCACCTGTTGACTCATGGACCTGAAAGTATTGCAGAGGAATTTCAGAGTGACAAA GATGTTATTAGTCAGATGATAAACTTTCAGTATATTGATGACAAAGGGTTCAACTGGGGCCTAATTGTTAGAAAGAAGTC AGAGAGGATATTGAAACTTATGGAAGAAGGAACTGTACTTAAGGAAGAAAGAAACCGTGCTCGAAGGTTGTCCAGAGGAA TTCAAGGTTTTGGTAGTTTCTCCAAACGACCAACTCCAGAACAATGCATTCTGCAGGAAAAATCTTTGCCTGACACATTT GGCCGATGTAACTTTGAATTCAACAACCATGAAAATCAGGAACACCAGTCCTCTTTCTCGAACCATATTCTGGAAACAGC AGCAGTTAAGTCTCCTAGTCTTAGTCATCATGGGGGAGTTCTCAATTCAGTGGATGGTGTAGGAACTGAAAGCTACATGG ATGATCTGAGAAACAATGAAATGCTCAATGAATCTGACACAAGCTCTAATGAAAACATGATTCCTGGCAAGGAGGTATGC CATCTGTGGAGCCTGAAAGGGGAGTCCAGTCTACTTTTGGAGGGTAACCAAGAAGATTCCAGAATCCAAACATTCATAGC AGAAGAGGATCACCCCTTTAGCTCAGCAGAACTGCATTCCACTTCTTCCCTTCTTTCTTCAAGATGA
Protein sequence (LotjaGi3g1v0283200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEEATNGKNPWAPNSPSLRSISKAAFELDDYWRIVEILHKRLLKFDNGNWRASYNSLIVLEHLLTHGPESIAEEFQSDK DVISQMINFQYIDDKGFNWGLIVRKKSERILKLMEEGTVLKEERNRARRLSRGIQGFGSFSKRPTPEQCILQEKSLPDTF GRCNFEFNNHENQEHQSSFSNHILETAAVKSPSLSHHGGVLNSVDGVGTESYMDDLRNNEMLNESDTSSNENMIPGKEVC HLWSLKGESSLLLEGNQEDSRIQTFIAEEDHPFSSAELHSTSSLLSSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 287 | 287 | 1.2E-77 | – | |
| CDD | 1 | 115 | 115 | 1.11526E-44 | – | |
| PANTHER | 1 | 287 | 287 | 1.2E-77 | – | |
| Gene3D | 1 | 139 | 139 | 8.0E-40 | ||
| ProSiteProfiles | 1 | 124 | 124 | 31.814 | ||
| SUPERFAMILY | 2 | 138 | 137 | 2.24E-32 | ||
| Pfam | 3 | 116 | 114 | 1.4E-25 | ||
| SMART | 4 | 124 | 121 | 3.3E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0283200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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