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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0284400 |
| Transcript ID | LotjaGi3g1v0284400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT3G25270.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151SN40|A0A151SN40_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi3g1v0284400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:57381688..57388342) extracted from Lotus japonicus Gifu genome v1.2.
CCCCAAATGAAATTAGGAAAAACATGAATTGGAGGAAAGCAACATTCAAACAGGAACAGGAGCATTCTACCCTGAGCAAC GAAAGGAAAGCATGACATGCAATTTTTCTAAAGAGGAATTCATTGAAAGCAGAATCAAGGTAACCTAGAGGACAATACAT CATTCAGAACAATAGCATGAAGCTTCGAGGGAACCTTCTCAATCAAAATAGTATCGGAGATTAAACTAGAGTTCATAGCT ACATAATTCGCCACATTATTGCCAACTCTACGAACAAACGAAAAATCAAAAGAAACAAAGGACTAGACCAAGTCTCTACA ATCTCTAAGAATGGAAAACAAGTAAGAACTACCCTCTGAACATCTGCTCCAAGACTTATACAACCTCAAATAATCAGTTT CAAAGCAAACATGCCGGAAACAATAGAGGTCTAAGGCCATGGTGAGAGAGAGAGCATCCCCCGAAACGCAACAACAATGA CCATAACCTCCCTATTATGATTGCAAGCAATGAACCAAAAAAAAAAACTAAAATTCACGAGGTTGAAAAGGAGACATCGA AATTCAGTTTGATTACCACTTCAGCAAGCCTCCGCCAGTTGGAGGCTACGTACAGAAAGAGCAGGCTTGTGGGAGCGAAT AATAAGAGGAAAATACAAAGTGCAGAATGGAGTGATTCGAGGGGCACCAAGCAGACATGTCTCAAATTGGTGGAAGGATA TCCATAAATCATGCTTTGATAGTCAAGATGACAAGTGGTTTAATGAAGCAATATCCAAAAAAATAGGTGAGGGTGACAAT ACCAGCTTCTAGCATGACCTTTGGTGTGGTACAGTGGCTCTTTCCTCTAAATTCAATCGCTTGTTTCGTTTGTCTACTCA ACAGGATTTTATGATCAAGGATTTAGGGTCCTGGTCAAATGGAATTTGGAATTGGAATTTTTCTTGGCGCAGAAGCTTAA ATTCAAGGGAGGCCACGTGGTTAGAGGGGCTATTGACCAAAATTAATTTCATCCATTTCAGGAGAGGAGAAGCCGATAGT TGGGTTTAGTGTCAAGTCTGCTTACATGTTAATTACGGGCCTTCAGCAAGCAAATCATGTTCCTGCTTTCAATACTATTT GGCATATTTCGGCTCCTTCCAATGTTAAAGCTTTTGTGTGGAGGGTTCTTTGGGGTCGGATTCAAACTCGGGTTGATCTC TCTAGAATAGGATTATATTTTGTTGGTGATGATTTGAAATGTCCTCTGTGCCAATTGGAAGATGAATCAGTAGATCACCT CTTGTTTTGTTGCGTCCATGCTTCTACTTTATGGTACAAATGCTACAAATGGATGGGTCTTGTGACCGTCCTTCCTGGTG AATGCAGTTCACACTTGTTTCAACATGCTTGTGAACCTTGGAATAAAAAACAGAGGACTGCTTGGTGGGATGTCTGGTGT GCAGTAGTTTGGTCGGTTTGGGGATGGAGGAATAAGGTAGTGTTCTGCAATGAGGCCCCGGATTGGTCCAATGCTTTGGA TATTATCCAATGGAAGTCTTGGAAATGGATTTCTGCTCTAGAAAAAGATTTTCAATGCTCTATTTTTAAATGGATTTCCG ACCCTTCATCTTGCCTGAGTCAAATTGGGCATTAATCTTGCTGGCTGGAGTCGGGGCTTTGTATTGAACCTCTTTCTTCG ACTCTTTTTGTATTTTTTTTTTCTAGTTCTTCTTATCTTTGGCTTTTACTTTGTATTGTTCCTGTTTGGGTTTTTAGCAC CCCTTGTACTATCTATTAATACATCATTGCTTAACAAAAAAAAAAGTAGGAAGGCTACACACAATGAACGAAGTTGGGCA TCGAGAAGCTCAGAGGACCCAACATGGCAACTCACACCAGCACCGTCTTGCAGGAGGGAACCAACCCGCGGAAATTTTAG TTCATGAGTTAAAATGATTTTTCTCAAATAAATTTAATTTTAGCACAAAAGAAGAGTTTCTTATGTGTCAATTTTTTAGG GATCCAAAAAAGATTATTTTTTATACACAATAGTGTAAAGCAATTTTACATTAACATCCATTTATATCCGAGCTGTGATT TATACACACCGCAACCCACTTTCCACTTTCATTTTCTATCTATTTCACTCTTCTCTATTAATCAAATCATCTATAATATC TTTAGTTTTTTTTTTTCCTATCTCTCTCCTCCTTCACCTATAACCCTCATCATCGTCGTTACTATATTGCTCACGACCTG ACACTGACAATCTTGTTGCACGATGAGAGCTGCACATTTGTGAGCGATACATATATACATTTAATGCATGAAAGTTGACT TCACCAATCTTTCTTGTAAAGTGACTCAGCAATCACATGACCATATCTTCTAACCATATCTTGTACAAAGTTTACTGTTT GAGAATTATTTTCCACCATTAGATTCTTTAAATATTTTTGAATCACATAACCCTTGAAACAAACAGTTAGAAGTTGGGAA CCTTCATCATTATGACTATGTGATGCTGATGCAGAAAAGAAAAGAAAGGGAAGAGATTGTGTAATATGTTACAATGTCTA CAAAAGAATAAAGAGAAACAGAGAGACTGTTACCACTAATGTGTTGTGTGAAAGACTTGTGTTTGGATTTCCTTTGAACT CAACTGACCCAAGTTGGATTTCACGTGTCAAAATCTTAGCTTCTTCAATCCATATTGAACTCAATGTGACAATATCTTAC TTATTCGTTAGTACCTTGAGATATGTGAAATCACATTTGTTTTTGTGTCCATGCAAAAACATACACAACATGGACAAACT CAGGACTGCATATTGCACAATATGAGGAGCAGACTACAGGTACGGAAGAAAACTAATCAAATCACAGAAGGAAAAAATAC CTTCTGGTCCAAACCAAGTCAAGAATCATATATCTGAGAAAAGCTTCATGGTTGAGGCCAAGTAATATAATAATACTTCA TCAATTTCGCTGTTGCACTTAAATAAGAAAGCATCAAGCATAGCAACTAAAAATTGATATTTTCTTTTGTAAAGGAAACA AGCATTTGATGGCTCGCTGTTGCACTTAAATAAGAAAGCATCAAGCATAGCAACTAAAAATTGATATTTTCTTTTGTAAA GGAAACAAGCATTTGATGGCACTAGCACCAGCTCCAAAGTCCAAAGGGCAAAGTTCAATCCTATCATATCTCTTAATTGA AAACTATCTACTAGTTGACCAAACAACGTTCCAGCAAAGTAAAGAATTCAGTAGAGTTGGAGTTGAATTATGCTTTTTTA GAAGATACTCAAACTCTGATTTATGTGCAAGTTTAGACAGGAAAAAATGTTCTGTGAAGCAAACAAATGTCATGTGATAT GAAGTTCCAGGAAATACAAGTCATTATGTAATAATAGATATGAAGTTCCAGACTTCCAGCAAACTACAGGACATTTGTCC CTAGAAATGCTGTGAGTGGAAACTGAGAGCTTCAGAGACATTATGCTGAAATGAAATTTCAAAGAGAGAAACAAGAATCA AGAATTTTCATTGTAAAACTTGTCAACTTACTTATAAACTTGACCATGAGAGAGAGACCCATAAAAAACATTTTTGTGAA CCATACTAAAAGCCGTAAAGGAAACTCCTTATCTATGTTTGGAAACTCATTCAGAAACCACGTTTAAGCCAAAATCTTTG TGAAGAGAAGCTACTTCCCTTAGCTTTTCCAATAGTAGAATCGATTCTGGATCTTGGTGACATAAAACTGAACATACACT AACAGCCCCTCCTTGACACTGTAGGATTTAGTTGAATCTGAGAAGTTCTGCCACAATTAGAGTTATTTAGTGCAAAGCTG GGAAATATATTCACCATGACACCTGATGGTTAAGCAAATAGGACATAGCAGATTGAAAGAATACAATAAGCTATTCATTT TTACATCATTCATGCTGTACTCTATTAACAGTCAAGTATTACAAGAATCATTGCCTAAAACTAAAAGCAAGAGAAAGCAT TATATCATATAAAATTAACCCAGTAAATACATTTGATTTTTCCACAAGTGATTCTTTAGAGTCATACCTTTAACCCAGAA CACAAGTGCAATTGAAGAGAGTTCAGTAACATGTCACTATGCTGGCACCCAACAAGTGGAAGCATACAATATGCGCCCCT TCCAACCTAGAAGCATCCAATTGTGATCTTCATTGAAGACAAAATCTTTGTGGTACCATGCTCTTAACCTGCCTCTAAAT AAGGCCATTATCTCCTTATCCAGTGGGATTTGCCTAAAACCAGCTCTTACATTCCTAGTCTGCCATTGTTTGTATGTCTC AGGCCTCTCAACCCTCTCAAAACCTTCACAAGCCACAACATTCATAATCTCCCGACCTAAAAACTCTCTCTCAAGCATCA ACCTCCATTCATTTGTGCGCGATATGAGAGTATCAAACATGTCATACATTGCGGAATAATGGAAAAGTGCCTCCTTGAAG CGTGTGGCGAAGAAAGGGGCATTGTAAGATCCATTTACTATGTTTTGCGTAAAAATATCCGGATTCATCTTCCTGATTAA ACTCAGAACTTCATTTCTAGGACTGTTCACTTCAATTGTTTCATCGTGCAGATTTTTGAACCTTACCAGAGTGTTCACAG CAAGTATTTCATTGCTTTTAATATCAAGGTCTTCGATTCGAATGGTTTCCCAGTTGCGTGATGCTAATGCCTTGTACTCA AAGGGAACATGAAAACGCTCACAGTAGCTAGCTAGACGCCGACCGGTTTCCTCAATTCTTTCTGCCGGGCGAAAACCGGC TTGAGGATACTCTATTCCTGTTATCCTTAGCTTGGGAGGACCACCCTCTCTTTTTGACAAAATCTTGATGAGAATCGGCC ACTGGAAACCATACAGAATACCAAAATCAATGATGTGAAGGGTTTCTGCCTTTTCAGCTATCTTCAAAATCATCTTATTT GAAAAGAAATGTGCAAATTTCTTGAAAGGGCAAGCAGATATAAAAACTTGGTAAGCTTTTAGGTAATCAGCAGCAGTGAA CTTCTTGAGGCTCATGTAGAATATTTTGGTTCCAGTACCATCTCCATCCAAGCGTGCCTCGAGGCCACTGGCAAAGTAAT GAGCCAATCTCTGTGATGAATCACCAAACTCATAAGAATGCTGCCTAATCTGCTTCAGAAGTTCATGAGCAGTCCTGTAA TCATTGGAGGACACAGCTTGTGCACAAAGAGTCAAAAGGGTCCTCATATCCACTGTCTCCTTCTTCCTTCCATTTCTCTT GGAACGAGGCTTGAATCCATCAGACGAATGCGGTTGTTGTTCTTGTTCCTCCACTTCTGTGCTACTCTCCTGCACAACTG GTTCAGCACACAGTGGTACATTTTCAATACTAAGCAACACCCGGTCAAACATTTCAGATATTTCACCACCATCATCAGAA CTAACCGCAGATTGCTTGTTGCTTCTTCTTTCTTCATCATCCCTGTCTTCACGCACATGATTCTTCCTATTCTTCAACAA CCCATTTGAATTTGAATTTGAATTTGAATTCTCCCTAGGACCATGATCCACCTTGACTCCTTCCCTTCCCTTAGGCAATT CAGACACCTTGCCGCTCTCAAGACCAGTGAAAAACTGAGTACTCTGAGGAAGAAACTTACTAGCTTCCTCTAACCCTCTT CTAAACTGCAACACAGAATCGACATCACTAAAGATATTCTCAGATAAAAGCTTGGATACAGAAGAATCCAAATCCAAATT CAAAACCCCATCACTAGTTTTAGTCAAAGATTGCGAAGCAACAACAACATGAGAGTTCGTTTGAGAAATCGAAAGCGCAG AACAATCACCAGAAACAGAGGAAACAGGGGAATCAGGGGAAAGAAACCTCATTCCATGAGAATTGGCGCTGCTTCCAGAA TCAGCATTCGAACAATCACCATCCAGCGGGTGTTGATTGGGAGAAAGAGGCAATTCAGCTTCTAAGGCATCATAGAAGGC TCTCTCCGTGTGTTGCAAGCTCAGTGGATCGTAGCACATACATGGCTTCTGCTCAAAGTTCTCTTCCATGAGAATCTGGC TGATGTACTTCACAGTTTCCGAGAAATCGGTGTCCTCCATGGAAGGATCCGCCGCCGCGGAACCCGACGACGGAAGAACC GGCTCCGAGTCGGAGACAGGGTTCGGAAGAGGGCCCACATCGAGAAAAGGATCAGTGAAATTGACGAGGTTGTCGGAGTG GTTGGGACCGGAGACAAGTACTAGGTTGCCTTCATCGTCGAACTCGTAGCCGATTCCGACGATGTTGGGATCCATAGCTG CTTCTGTGACATGAAGGTGGAAGAAGCAGAAGCAGAGGTTTAGAATATATAATGGAGTATGAGAAAACAAACGAAAAGTA CTACAAAACAAAAAACTGTACTGTGAGTAAGTGAGTGAGTGACCCTAAAGGGCCTGAACTATAGGACGTGTAGGAGAGCT AGATTTGCCATCCCAACTATTAGATTTCACATCCTCAATTTTCGGATTTTCAAGTTCTGAATTATTTCGGAATCTTAGAT TCCGAAATTAATTCGTGATTTTCAGTTCAAAATACATCTAACACCACACTTTTGAGTAAAAAAGTGCTTCGGAAACCTTA TTTCCGAAATATTTT
CDS sequence (LotjaGi3g1v0284400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAATTACGGGCCTTCAGCAAGCAAATCATGTTCCTGCTTTCAATACTATTTGGCATATTTCGGCTCCTTCCAATGT TAAAGCTTTTGTGTGGAGGGTTCTTTGGGGTCGGATTCAAACTCGGGTTGATCTCTCTAGAATAGGATTATATTTTGTTG GTGATGATTTGAAATGTCCTCTGTGCCAATTGGAAGATGAATCAGTAGATCACCTCTTGTTTTGTTGCGTCCATGCTTCT ACTTTATGGTACAAATGCTACAAATGGATGGGTCTTGTGACCGTCCTTCCTGGTGAATGCAGTTCACACTTGTTTCAACA TGCTTGTGAACCTTGGAATAAAAAACAGAGGACTGCTTGGTGGGATGTCTGGTGTGCAGTAGTTTGGTCGGTTTGGGGAT GGAGGAATAAGGTAGTGTTCTGCAATGAGGCCCCGGATTGGTCCAATGCTTTGGATATTATCCAATGGAAGTCTTGGAAA TGGATTTCTGCTCTAGAAAAAGATTTTCAATGCTCTATTTTTAAATGGATTTCCGACCCTTCATCTTGCCTGAGTCAAAT TGGGCATTAA
Protein sequence (LotjaGi3g1v0284400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLITGLQQANHVPAFNTIWHISAPSNVKAFVWRVLWGRIQTRVDLSRIGLYFVGDDLKCPLCQLEDESVDHLLFCCVHAS TLWYKCYKWMGLVTVLPGECSSHLFQHACEPWNKKQRTAWWDVWCAVVWSVWGWRNKVVFCNEAPDWSNALDIIQWKSWK WISALEKDFQCSIFKWISDPSSCLSQIGH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 7 | 83 | 77 | 2.5E-16 | ||
| PANTHER | 11 | 150 | 140 | 1.6E-23 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0284400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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