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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0284700 |
| Transcript ID | LotjaGi3g1v0284700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Haloacid dehalogenase-like hydrolase; TAIR: AT5G59480.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q09893|YAI5_SCHPO Uncharacterized protein C24B11.05; TrEMBL-Plants: tr|G7IRW0|G7IRW0_MEDTR Haloacid dehalogenase-like hydrolase; Found in the gene: LotjaGi3g1v0284700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:57412015..57414695) extracted from Lotus japonicus Gifu genome v1.2.
AGTTCACACAACAATCGCTTTCACTCAACGCCATTTCCTATAACATCAACCGACCATTACTTCTCTTCTCCATTCTCTAC CATCTGCTTCTTCAACACTTCGTGGATCACAGTAAGTTTCGTTTTTCTCTCAATCTCTTGCTTTTCCACTTCACCATTGC TTGATGATTTGAATTTCCTTCACTTTTCACTTTAGTATTTTCACTCTCATTTGCCCTTGTATCTGAACCCTTGATTCATG CATTTTCATTCTTCTCACTTCTTTTTCTCCTGCGTGTCGATCTAGTACTAGAGTCTATAATGGAAAACGGGGATCACTTC CAGGAAATTTCAAACCCCAAATATGATTGTCTTCTATTTGGTAAGCCTTCACTTTATTCACTATTACATTACATGATTCA TTGTTGTGCACTGCCGGTTATGTTTAATTTGTTGTTTTTTTAAACGTTTCCAGATCTTGATGATACCCTTTATCCATTTA GTTCTGGTTTATCAGCACATGTGACAAAAAACATTCGAGGTAATTGGTTTAACAAATTGGAGATATGCATAATGTGTCGT GATGACTTGGATGTGTTTGGATTTCACTGAATTTACTTGTTTTAATGCACTGTTCAGATTACATGATTCAAAAGCTTGGG ATAGAGGATGGTATAGTTCCTGAATTGTGTGTTTCGTTGTATAAAACTTATGGGACGACAATGGCTGGTCTCAAGGTAGA ACTTAATTAAAAGAGGCATTTTGTTTCATTTTTTATTAAGAGGCCATGGTGAACTAATCAGTCATTTTGTCTCGTTCCTT TTAACCAGGCAATTGGCTATGACTTTGACTATGATGACTTTCATGGGTACTTAATTAATTAGTCTTTACATATTTGTGAT TTTGTCCGTTTATTTACATCATTTGAAACCATGAATGAGGATCTAAAACTATTTTGTGTTGAGCAGCTTTGTCCATGGGA GATTGCCATATAGTATACTGAAACCTGACCCTGTTCTGAGGGGAATTTTGCTGAGCTTGCCTATTCGAAGAATTGTAAGT TTTCTTCGTTCTAATTTGATGGCCAGATCGAGTAGCAATCACATTCTCTCTTCATCATGATGGATTTATCATGTTTTGTT TTTCCAGGTTTTCACTAACTCTGATGATGCCCATGCTAGCAGAGCGCTTCACAGGCTTGGACTGGAGGGTTGCTTTGAAA GAATCATAAGCTTTGAAACTCTGAATCCCTCCAAGAACTTAGATATTCCTGACAATAAAGATGGTAGTGATCAACCAAGT TCCAAAGGAATTTTTAATTTCCATGAGTACATTTGCAAGCCTGATCCTGATATCGTGCTTCCAAAGACCCCGGTTGTCTG CAAACCCTCCCAAGATTCATTTGAAAAGGTTTTCAAGATGGCAAATATTGACCCTAAAAAAACAGTATGAACTTTAACCC TTTCCTGAGTAACAGTTTGACCATGGATTTTCCCTTCTGTCTTAACTTCTGATTCTGATTTGACTTTCGTCATGGGGTTC TTGCAGTTTATGTCACCAATCATAATCTTTCTGATCATGCGCAATTATTTAAGAAATCAAATTATTAATTTATTGTGCTT TTGCAGTTGTTCTTTGATGACAGTATCCGCAATATAAAGACGGGCAAATCCTTGGGCCTCCACACAGTCTTGGTAAGTAG TCCTTCTTAACGAACGAACAGAATACTAGTCATAAGAACTTACTTTTGTTTTCCCTTCTTTGATGGTAATGAAAGAGGTG ACAGTGTGACCCTTACAAAATCATCATGAGTGGCATATAAGGAGAATTTGAAGCCGTTTGGATGCAAACCAAAAAGCACT TATTGGAGTTTATGTAGTACTTTTTCTAGTAGATAAGCTCCAAACAGGCTCTTACTTTCGATTTTATGTGGATATAATAT CCGTTAATGCTAAAGCTTTTATGTTTGAGCTTTTCATATGATTAAATTAAATGGAACTTCAAGTATACATTTGTTGAACT TAGACAATCTATGTATGTGCATGTTCTTATTCTTACATTAGATCAGTGTTAGCTTTAAGAAAGTATAATTTGAAATTCAC TTAGCATATGATCGAAACGCATATCACTACTAAAATCATTTCTGATGTAATTTGAATTTAAATGTGAAATCTAAATGGAA CATTCATGCAGGTCGGTACCTCCGTTCGAACTGCAGGAGTGGATCATGCCTTGGAAAGTATCCATAATATGAAGGAGGCA TTTCCAGAACTGTGGGACGCCAATGGGAAGCCTGAAAGTGTCAAGTATACTAGAAAGGTTTCTGTTGAAACGGCAGTAAA AGCTTAACTAGCTGATTTCTGAACTTTTGGTGTCTAGCACTGTCTTGTTATCTGACTTTGATCATTGTACTTGTTATTAG AATCCGAACTACTTATTATATAAATGCATTTTTATTCGCCATGTTTGGTTCTCCTTTTGGAAGAGATTTATTTCAAACAA GAGGCAAATGCACACCATATATAAAGCAGGCATTGAAAACTTGAGTAGCATGCCTAACAAGAAGTAATTTGAATGCTTAA ATGTGTGATTGTTGATTTCAAGATAGCTTAGCTTTCCCTCTTCACTTGGTAAAACTCGCAATGAGGCTTAGGATGGTTAA ATTCTGCTTTATGCAGGTGCAATCAGATGTGAGATTTCCTG
CDS sequence (LotjaGi3g1v0284700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAACGGGGATCACTTCCAGGAAATTTCAAACCCCAAATATGATTGTCTTCTATTTGATCTTGATGATACCCTTTA TCCATTTAGTTCTGGTTTATCAGCACATGTGACAAAAAACATTCGAGATTACATGATTCAAAAGCTTGGGATAGAGGATG GTATAGTTCCTGAATTGTGTGTTTCGTTGTATAAAACTTATGGGACGACAATGGCTGGTCTCAAGGCAATTGGCTATGAC TTTGACTATGATGACTTTCATGGCTTTGTCCATGGGAGATTGCCATATAGTATACTGAAACCTGACCCTGTTCTGAGGGG AATTTTGCTGAGCTTGCCTATTCGAAGAATTGTTTTCACTAACTCTGATGATGCCCATGCTAGCAGAGCGCTTCACAGGC TTGGACTGGAGGGTTGCTTTGAAAGAATCATAAGCTTTGAAACTCTGAATCCCTCCAAGAACTTAGATATTCCTGACAAT AAAGATGGTAGTGATCAACCAAGTTCCAAAGGAATTTTTAATTTCCATGAGTACATTTGCAAGCCTGATCCTGATATCGT GCTTCCAAAGACCCCGGTTGTCTGCAAACCCTCCCAAGATTCATTTGAAAAGGTTTTCAAGATGGCAAATATTGACCCTA AAAAAACATTGTTCTTTGATGACAGTATCCGCAATATAAAGACGGGCAAATCCTTGGGCCTCCACACAGTCTTGGTCGGT ACCTCCGTTCGAACTGCAGGAGTGGATCATGCCTTGGAAAGTATCCATAATATGAAGGAGGCATTTCCAGAACTGTGGGA CGCCAATGGGAAGCCTGAAAGTGTCAAGTATACTAGAAAGGTTTCTGTTGAAACGGCAGTAAAAGCTTAA
Protein sequence (LotjaGi3g1v0284700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENGDHFQEISNPKYDCLLFDLDDTLYPFSSGLSAHVTKNIRDYMIQKLGIEDGIVPELCVSLYKTYGTTMAGLKAIGYD FDYDDFHGFVHGRLPYSILKPDPVLRGILLSLPIRRIVFTNSDDAHASRALHRLGLEGCFERIISFETLNPSKNLDIPDN KDGSDQPSSKGIFNFHEYICKPDPDIVLPKTPVVCKPSQDSFEKVFKMANIDPKKTLFFDDSIRNIKTGKSLGLHTVLVG TSVRTAGVDHALESIHNMKEAFPELWDANGKPESVKYTRKVSVETAVKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 289 | 289 | 2.7E-141 | – | |
| PANTHER | 1 | 289 | 289 | 2.7E-141 | – | |
| SFLD | 12 | 268 | 257 | 0.0 | – | |
| SFLD | 12 | 268 | 257 | 0.0 | ||
| TIGRFAM | 16 | 239 | 224 | 9.6E-65 | ||
| CDD | 17 | 241 | 225 | 3.51746E-78 | ||
| SUPERFAMILY | 17 | 243 | 227 | 4.08E-28 | ||
| TIGRFAM | 191 | 239 | 49 | 2.2E-13 | ||
| Pfam | 196 | 247 | 52 | 6.2E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi3g1v0284700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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