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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0288500 |
| Transcript ID | LotjaGi3g1v0288500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger-like protein; TAIR: AT1G51220.1 WIP domain protein 5; Swiss-Prot: sp|Q8W031|ZWIP5_ARATH Zinc finger protein WIP5; TrEMBL-Plants: tr|A0A151SUK8|A0A151SUK8_CAJCA Protein TRANSPARENT TESTA 1; Found in the gene: LotjaGi3g1v0288500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:58510308..58514192) extracted from Lotus japonicus Gifu genome v1.2.
AAAAATAATAAATAATAACATATATATATATATTTAACCAATGAATGCAATGCAACCTTTTCTGCACACTGTTGATACAA ACCTCCTTTCAAGTCCCTAGGTAATCTCATCATCTCCTTCTCCACGACGACCCTGATGACTTTTTCCCACTCTCTCTCTT TATTTGTTTTTCTCCGTTGTTAAGTCACACTTTGGCAAGTGATTTCTTGTCTCCCTTTTTCTTACTTTATTGGGTTTGCT TTACCAACATTGGATTTCTAACACCTCCTTTTAACCCTCCATCCTGACTCTTCCATTATGACAATTATATATTTTTTGTT GAATTGAATCTCAAACTCGCCTTTGTATATCTCTCCCTCTATAATAACCTAATAATCCTTTCAATTCCAACAAGATCATC ATCATCATCATAAACCCTTCCTTTCCCATTCCCTCACCTCCTCTCATCATGACTCAACCCCACTGCTCCAATGACTTCAA CCATGGTAATTGGTTTGAGTTTGACCTCAATTATTCTCCATCACCTTGCTTCAACCCACCATTCTACTTTCCTTCTTCTA GTTATCATCACCATCATCATCATCATAACCTCACAAGTGGAACAAGCATCTCTTTTTCTCAATCTTTTCCTTCATCTCCT CCTCCAAGAGAAGCTTTACCTCTCCTTAACCTAAGCCCTCCAAAACGTGATGAAGATCTAGAATCTTCCTTCAGTGCCAT GGAAGTAAAAAACAAGAAGGAGAAAGAACTTCTAAGCATATCATCATCTCATGTGACGGTGGCTTTGCACTTAGGGCTTC CACGTTCAGCTGATTTGGCTTCAAATATTGAGATTTCAGATCATCATAAAGAAGAAGAAGAAAAAGTAGTGACTGTTGCA GCTGCTTCTAGTTCTGAGTATCCTGCATCAAGTAGTAGAATCAACAGGAGTCAGTATTGGATCCCTACACCTGCACAGAT TCTGATTGGTCCAACTCAGTTCTCATGTCCGCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGGTATTGTTGC CTTTTGATCATCTTGAAAAAATGAATTTGATCCCTCGAGAAGATATAAAAATAAAATTGTTAATGAAAACTTTGATTGAT GATAGATGATGGATGATAGACACAGAAAAAAATAGTCTTTCTTTTCCCTTTTTCTTCTTCCTCTATGCTACTACCCCTAC TTTCTCAGATCTTGCTTTTGTGGAAATTTCCTGAAAAAAAAAAATGCCATTTCTGTATATTCTATAGTTATATACTGGTT TGAAATTCTTCTACAATTAATTTTATAGTCATAATAAATTATGTGATGAAACTTTTGCACGCAGCTTCACATTGATTCCG GAATAAGTAAGCTGATTCAATGTGCTAATATTACTTTAAATTTTCACCTATACTCTTGTCTACAATACATAAAAAAAAAA AATTGTGTGTAATTTAGGGTTTCCCCCATGCCAACTACATATATAGCATGTCCTTGCCTTTTGTCTTGATCTCTTCTTAC AAGCCTCTTCTACTATGGAGGAGAGAAAAATGAGAAGTTGTGTGTCTTTGCATTACTTCTTCATCAGAATCAATTTCAAA ATTTAGAAGCTATTAATCGATTTAGAGTAAATTGTACAAAGATTTTCAACCGTGCACTAAGGTTATTACTTTTTGGACAT TCAATTTTTTTTTTCTAGTACTATAGATAGAAAATGGAAGGGTGTCTAAAACTGAATGTACAGGGCTTAACAAATCTTAG TTTATATGAAAGAATGATGTTAATTAACACCATCACGAGGAGACAAAATGAAACAGAACCAAGTAATTATCAAGCTCTAG TATACATCACGCATGGAATGAATTTATTTCTCATTGTCCATAAAAACAAACATAAATACCTGTACAATATTCCCTTGTTG GGCTTCCGAACTATTTCTTTATTAGGATGCCCTACATTGTCATATTTTTCTTTAAGCCTAGACCATAGGTGACTAAATAA GAAGTTTTTGAAACATATTGAAAAGGACAAGGCTAATAATTCTTATTGTGATCTTAAGCTAATTCTGCCTCAAAATCTTG GCCGGCAAAGTAAAAGTGAATCCTGCGCCAGTCTTTACAAAATTTACATGCAACAAACACTGAGTTTGAAGCAAATGATG TTTCACACATAGAGACTCTTTGAAAGTATCAACTAATGAGAAGCTTTCATCAAAATTAACTATGAAACTTAGAAACTATT TGTAGACAAAATTTTTTCCTTGGAATTGATTTTGATGATTTTAAAATAAATTGTTTAAGATCGAGTTTCCAAACATACAT GCACGGATGCACCAATCAATTATAATATTTATAAGCTATTCTAAGTGCATGTTTGGATACATGGTAGAAACCACCATAAG TCAAAATCATAGTAGATAGGAGCAACTTTTCTTAGTTTTTACTTCTGTCTATCATGGTTTTCCTATATATCCAAACATGC ACAAAGAAGTTTCTCCCAATAAGTCTCAGTATAATTAGTAGATAAATGAACTCCTTAAGTATTTATTCCAGAGTTTGATC CTGGACGTTGTGTACATAGTACAATTTCTTGAAATATATACTCACTTAATGTGATCTCAGAACCTTGAGATGATTATTTT TATGATTGTCGGTGGAATAATCTTGGTAATTAAAAAAAAAGTTTCTCCTCATTTTTGTACAATATAATTGAATTTACATA AATGCACTAGTTATTTCTAAACATAGTGACTTCTATTCCTTCCCGAATCCTTTTGCATTATATTTGCAATTATATGATGA CATAAATTTCTTCAAATTAAAAAATTTCAACAGATGCATATGTGGGGACATGGATCCCAATACAGAAAAGGGCCAGAGTC TCTAAGAGGAACACAACCAACAGCAATGCTAAGACTCCCATGCTATTGCTGTGCACCAGGATGCAAGAACAACATTGACC ATCCAAGAGCAAAACCACTCAAAGACTTCAGAACCCTCCAAACACATTACAAGAGAAAGCACGGAATCAAACCTTTCATG TGCAGAAAATGTTGCAAAGCGTTTGCAGTGAGAGGAGATTGGAGGACTCATGAGAAGAACTGTGGGAAGCTTTGGTATTG CTCTTGTGGGTCCGATTTCAAGCACAAGAGATCTCTTAAGGATCATATCAAGGCGTTTGGAAATGGACACAAAGCTTATA TTAATGGAATTGATGATAATTGTCTTCTTGATCAAGATGATATTGAAGGGGGTTCTGAAGTTGAGCAAGAAAATGATGAG TCTTTGCATAGTCATGGTTGATGTGTTTTCAACTATAAAGACAACAACACATGCAATCATGTTTGTTTTGGAACTAATTA CTATTTTGTTGACTAAGACTATGTATGCGGCAAAATTTTCTTCTTGTCATTTTGGATTTGATATCTCTCTCTGGGAATCA CTGCACATAGATGTGAACTTTAACAGGATATGCATATTTCAAGTGTATCTTTGGGAGGATTTTCAAATGGTCAAACACCA AGAGAATCTTCATTTAATATATATCCTGGTTGGTTAAGGGTAAAATCAATGATGGCGGCATATAAATCTTCATGACAGTG AGTAATTGGATCTGTATTTTTGTAGATTTCTTGGTTAAAAAAATTATTTTGTGTTGAATTGTTTTTGAAAAAGAGCTATT CTATTCTATGGTGACCATCTTAAAAACTTGTTAATTCATGAACTATATTTTTATCATTAATATTCAGTACAATTTATTTA CAATATATTTTTTATGTGCTAAAATTTATGTGCGGAGAAGCCATCAACTTGTGAATCAGTTTTTTTTTCCAACAATAGAC AAAACTTTGAAAAATTGAAGTTCTTTTAGGGCCCGTTTGGTGCGA
CDS sequence (LotjaGi3g1v0288500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCAACCCCACTGCTCCAATGACTTCAACCATGGTAATTGGTTTGAGTTTGACCTCAATTATTCTCCATCACCTTG CTTCAACCCACCATTCTACTTTCCTTCTTCTAGTTATCATCACCATCATCATCATCATAACCTCACAAGTGGAACAAGCA TCTCTTTTTCTCAATCTTTTCCTTCATCTCCTCCTCCAAGAGAAGCTTTACCTCTCCTTAACCTAAGCCCTCCAAAACGT GATGAAGATCTAGAATCTTCCTTCAGTGCCATGGAAGTAAAAAACAAGAAGGAGAAAGAACTTCTAAGCATATCATCATC TCATGTGACGGTGGCTTTGCACTTAGGGCTTCCACGTTCAGCTGATTTGGCTTCAAATATTGAGATTTCAGATCATCATA AAGAAGAAGAAGAAAAAGTAGTGACTGTTGCAGCTGCTTCTAGTTCTGAGTATCCTGCATCAAGTAGTAGAATCAACAGG AGTCAGTATTGGATCCCTACACCTGCACAGATTCTGATTGGTCCAACTCAGTTCTCATGTCCGCTTTGTTTCAAGACGTT CAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCCCAATACAGAAAAGGGCCAGAGTCTCTAAGAGGAA CACAACCAACAGCAATGCTAAGACTCCCATGCTATTGCTGTGCACCAGGATGCAAGAACAACATTGACCATCCAAGAGCA AAACCACTCAAAGACTTCAGAACCCTCCAAACACATTACAAGAGAAAGCACGGAATCAAACCTTTCATGTGCAGAAAATG TTGCAAAGCGTTTGCAGTGAGAGGAGATTGGAGGACTCATGAGAAGAACTGTGGGAAGCTTTGGTATTGCTCTTGTGGGT CCGATTTCAAGCACAAGAGATCTCTTAAGGATCATATCAAGGCGTTTGGAAATGGACACAAAGCTTATATTAATGGAATT GATGATAATTGTCTTCTTGATCAAGATGATATTGAAGGGGGTTCTGAAGTTGAGCAAGAAAATGATGAGTCTTTGCATAG TCATGGTTGA
Protein sequence (LotjaGi3g1v0288500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTQPHCSNDFNHGNWFEFDLNYSPSPCFNPPFYFPSSSYHHHHHHHNLTSGTSISFSQSFPSSPPPREALPLLNLSPPKR DEDLESSFSAMEVKNKKEKELLSISSSHVTVALHLGLPRSADLASNIEISDHHKEEEEKVVTVAAASSSEYPASSSRINR SQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRA KPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYINGI DDNCLLDQDDIEGGSEVEQENDESLHSHG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 343 | 343 | 2.9E-153 | – | |
| PANTHER | 1 | 343 | 343 | 2.9E-153 | – | |
| MobiDBLite | 44 | 84 | 41 | - | – | |
| MobiDBLite | 49 | 63 | 15 | - | – | |
| ProSiteProfiles | 178 | 205 | 28 | 9.66 | ||
| ProSitePatterns | 180 | 200 | 21 | - | ||
| SUPERFAMILY | 244 | 282 | 39 | 3.84E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0288500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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