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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0294300 |
| Transcript ID | LotjaGi3g1v0294300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Integration host factor subunit alpha; TAIR: AT1G05960.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q982Z7|IHFA_RHILO Integration host factor subunit alpha; TrEMBL-Plants: tr|K7M3J3|K7M3J3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0294300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:60188254..60195673) extracted from Lotus japonicus Gifu genome v1.2.
TTACCACTTTTTGAACACTAGGTGATAACTCCCATCTTCTGTTGACCATTTTGGTCAAGCATTTGGATCATAAGAATGTT GCAAAGCAGCCTATCCTTCAGATTGATATTATTAAAACAACCACACAGCTTGCACAAAATGTGAAGCATCAGACTTCAGT TCCAATCATTGGTGCAATATCTGACCTCATCAAACGTTTAAGGAAGTGCCTACAAAATTCAGCTGAAGCATCCAGCATAG GAAATGATGCATTTAAGCTTAATACTGAACTTCAGTCTGCCTTAGAAAGGTGTATATTACAACTTTCGACAAAGGTAAGT ATGCTAACTTTTATGCATCAATTTTTTGTTTGTCTCTCAAACTTTACATCATTGTGGGGCCTTAGCTGTGATTTATGAGT GAAGTTTCTTAGATTCTAGATGTTTGTATATCCAATTTGTTATCTGTTCTTTCTACAGCAGAGGATTTTTTTGCCTTATT TTGGTTACCAATCTCCTGACAAGAATGTAGAAAAACTACCTGTGAATTTCTGACTTTTGTGGAAGATAGCTTACTATTTA CAAATTTTTCCTCTCTTTTCTTATTAGAAAATGTCTCAATGTTATAAACAACTAAATTCCAAAAGAAGTATTAGGGTTGA GTATGTTGCAAAGCATTATTTCACTGCTTCTACTATGACAGGTTGGGGATGTAGGACCAATTCTTGATTTGATGGCCGTG GTGCTAGAGAGTTTCTCCACGAATCCTATCACAGCAAGAACAACAATGTCTGTTGTCTATCAAACTGCAAAATTAATCAC TTCCATTCCCAATGTGTCATATCACCAGAAGGTAACTGTTCTTACTTAGACTAAGAATAGTTTTTCTACATGCTTAGCTT TAGTGAATTGTCTTAAACTTTTGTGTTATTTTTGGCCCTTTACAGACTTTCCCTGATGCCTTGTTTCACCAATTGCTACT GGCCATGGCTCATCCCGACCACGAAACACAAATTGGAGCGCATAGTGTATTCTCTATGGTGCTTATGCCATCCATGGTTT CTCCTTGGTTAGACCAAAAAACGATTGCTAAGAAGGTACAGAGTAACAGCTTCTCCAATGAAAGTTTTTCCGGAGAAGAA CATTTGAATGGAAAGGTGGTTGAAGAAAAGCTAATAGTAGGTGTTAGTGGGAAGAAGTTTTTCACTCCTGTGCTAACTGA TGGAAAAGAAGTAAGAATTTTTTTACTTATCATAATTGTTTGTATTTAATTCTGTTTTTTTATTCTCGGAGGGGGTGATG TAACATCCTGACTTGACGACTAGCCTCACGGTAACAACAAGAGTCTTTTCAGCGCGCTTTGTCCTCACTCGTGCGCTTCC CGGGAAAACTTCCCAGGAGGTCACCCATCATAATATTGCTCCAAGGCTAGCACACTTAACCATGGAGTTCTTATGAGTTG GGCTCCCGAAAAGAAGTTGCAACTTGTTGTCATGAGTAGTACCAATCAAATCTCTTATGCCCTCCTCAACTATATAATCC ATCCCTATACAGTCTAGGAATACCTCTTGTTCGGGTGTGAGATCGGTTATTTCATGTGCCCCTCCGCCTAGAAGCCTGCC AGGAGCCGCTCCTTGTCCGTGCCTCACTGCACCGGCGATCACTCCCCGCCCTCGTCGGCCCCGGGCGACACAGGCCCACC AACTTCCGCTTGGTTCGTCCTCGAACCACACCGTACTGGGAGAGGTCGGCTCTGATACCAATTGTAACGCCCCGATTTCT CGAGTGTCACACAGTAAACCAAACGTCACCATTTTCGTAGAGAATTTTCGTCGTTCAATTATTAATCTTGAATTAATGAG AAAAGTTCATTTATTGCGAAACTCTTGAAACTTTACGAAATAACTCACGGAATAAATAAGACATACATTACTGAATAAAA ATAACTCTTAATTAAAAGAAACCATAATTCAATAGTACATAAATTAAACCTTGGGCAAAAGCCCTACATTAAAGTACATC AAAAGAAATCCCTGAAAATAACAACTGATAGAAGATAGTTCAGCACTACGAAACACTCAACCCCCAACATGGCAACATCA GTCACTCGTCGAGCCAACCGCACTGTCTCTGGCGTTTCTTCACAGGAGCCCTGACCTCTGGTGCATCTCCATTACCCTCC GTCTCGGCAACCCCAGGTACATCAGCTTGTGATTGCGGCTCCACGTGATTGAGGGTTGTACTGTGTTGTACTGTGGTCCC CTCCGAGAATTGTTCATCTGCGGATGATCGTGATTTGGCAATTGGTGTTGAGGTGGTTGTGTGAATGGTGAGGTCGTTAG CCTAACTGAAACTTAGGTGACTGACTGTGATATAACTTAAAGATTTTCCTTATTAAATCTTGTTATTTATGAGAATTACA TGGATATGTGTATGTTTATATGAGAACATGAGATCTGACCCTGTTACTTGTTTATGTGTTATTCTGGGGGGGCCCAGATG GTGAAGGTCAAGAGCGCAGTGACCTCTTGGACGATAGACTTACATGATCAACACAAGGAAAATGCCTGACAGACCGACTC TGCCTAGGAATGTCGCCTTTATGTCGGCAGCGCTACAATTACGGGACGTGACCGACACGGGAACGTCGTCGAGACACAGA TCATGGAGTGGGGCAAGGTCAAGATGCCCTTTGCACCATGCCGCTTCTTGCATCCAGGAGATGAGGGTTCTTGCTCGAAC TCTCCTCAGTGGGCTGCAGGAGAGGAGGGTTCTTCACGGGCGATCGGGGCACCAGACTGGTGGGCACGCATTGGCGACTT TCCAGTTCCGCCTCCAGAGTCTCTTCCAGTTCCTACTGAGCATATGGAGGGTTTTGCTCCACGGTTCGTTGCAGTAGCTG ACCTGGGTTGCCGAGACAGAGGGTAATGGAGATGCACCAGAGGTCAGGACTCCTGTGAAGAAACGCCAGAGACAGTGCGG TTGGCTCGACGAGTGACTGATGTTGCCATGCTGGGGGTCGAGTGTTTCGTAGTGCTGAACTATCTTTTATCAGTTGTTAT TTTCAGGGATTTCTTTTGATGTACTTTGATGTAGGGCTTTTGCCCAAGGTTTCATTTATGTACTTTTGAATTATGGTTTC TTTTAATTAAGAGTTATTTTTATTCAGAAATGCATGTCTTATTTATTCCGCAAGTTTATTTCGTAAAGTTTCAAGAGTTT CGCAATAAATGAACTTTTGTCATTAATTCAAGATTAATAATTGAACGACGAAAATTCTTTACGAAAATGGTGATGTTTGG TTTACTGTGTGACACTCGAGAAATCGGGGCGTTACAGGTGAGGGTATGCAGCTCCTATTCATGGATTAATCTTAAATGAT TGAATTTAGTTATGTTAGACACTCAGTTCAGTTAGTTTGGTTGATTATTTTTTCTTTTTCTGATAATCTGGACCATGATT ATTTCCTTGCTGTAGATCCTAAATCCTAACAAATGCTTTTATGCCTGAAATTTTCAGGATCTAAGTTCTCTTAGGTTGAG CAGTCACCAAGTGAGTCTCTTGCTCTCTTCAATCTGGGTTCAGGCAACATCCGTGGACAATATCCCTGCAAGCTATGAGG CAATGGCACACACTTACAGCATTGCTTTATTGTTTACTCGTTCTAAGGTTAGATTTGTGCATACCAAGTGCAGATTTATG ATAAGTGAAGTACCAAAACTCATTTAGCTCAGTTTGCTTAATTTTTACGCATTAGAATTGTTTCAATTGTTTAGTACCAT TTCAGAAATTTCTTGGCACTTGTAATATTACAGTTTATGAAAGTGAAATAAATCATAAGAACAATTTAGAAAAGAGTTCA ATTTGGTGTGAAATTGGCACCAGCATTAGTGCCAGCCACAAGAAATCCAACAAGAGTTTTCACCTTTTCAGAAACGAAGA AAAATTTATGTATATTACATTTTTTTAGTTAATCTTGGAAGCGTCTAGAGCCAAGTGATATCACATGATTAATTTCTCGA AGTTCATGTTAATGCTTTCAACAGACATCCAGTTACATGGCTTTGGTAAGATGTTTCCAATTGGCATTCTCCCTCAGAAG CGTATCTTTGTACCAAGAAGGTAAGTGGGATACTGGTGATTTTTTACTCTCTATGAAGGAAGAACAAAGAATTCCTGTCT CTATGGAATTGAAGTTTGGAATGGATTCATCATTCCTGACTTTTTTTTATAACAAACAAAGGAATGTTCTTTCCCACGGG GAACGGAAGCAAGAATGGAATCCATTTTAAGCGTTTTTGAATATTCTGCTACATGTGAAACTTATTTACTGAGAATTATA TTTTCTATGATAGACATTTTCTGACGTGTTTCTTTACATGTCTGTTAAAGGAGGCTTACAGCCATCTCGTAGGAGGTCTC TTTTTACCTTGGCTTCGTACATGCTTATATTCTCTGCAAAGGCAGGCAATTTCCCTGATCTAATTCCAAAAGTTAAAGCG TCCCTGACAGAGGCAACAGTTAGTTTCCTCCCCTAATCTCTTGATTTGATCCCCATTCCACCTACATCCTTGTTCTTCAG CTTCTGTTTAAAATTTAGTGTCATTATCTGTTTTCCAATTTTTATTATAATTAGATTAACTAATCAAAGCCATAAATCCA CAGGTAGATCCTTTTCTTGAACTAGTCGATGATATTCGGCTGCAGGCTGTTTGTATAGAATCAGAGAGGATAGTTTATGG TTCTCAGGAAGATGAAGTTGCTGCTATGAAGTCACTTTCAGCTGTAGCATTGGATGACAAGCTGTTGAAAGAGACTGTAA TATCATACTTTCTGACTAAATTTGCAAAATTATCTGAGGTAATATAAATTTGCTTGGGCTCACATATGCTACTTTAATGT GCTTTGACAATTAATAGTGGTACTTTTTCCCTAAGTTAGTAGTCAATTAGATTATACCCTAAAGAGATGTGGTTTTGATA TTCTCTTATGTATGTAAAAGGGAAAATATGTAAAGAAAAACATAAGGATTTTTACGTGCTCAAATAGATGGGTGGTGATA TGAGCAACAAATAAAAAACAGAATAAATGTAGAAGGGTATGGAGGACAGATTGCATTCTGGTTTGCTTTACTGATAAATA TGCCAGTGATAAAGGATATAAGATAATAAATTGAATGTCTGATCAAGTGTTCAGTAATGATTGAATATAAGCCGTTAATT GGTTGCTTTTGGTTCAACTTTTTTACGTATTTGTTGTGTTCCAGTAGTACACGCACACATTTGTTCCGTAAATTACATAT CAAAACAAATTCTCCTAAAAATAATACTTGCGCATATCATGTGAGATATGTAGAGTGTGGACATTTTATCAGAAATGGTA GTAGGTTTGCATGCAGAGGAATCTGTAGGCTGTGTATAGTTATGTGGAAATAACATGATTTTTTCCATATTTTCCAGGAT GAGTTGTCCAGCATAAAGAATCAACTTCTACAGGGTTTCTCCCCAGATGATGCATATCCATCGGGACCTCCCTTGTTTAT GGAGACACCAAGGCATTGCTCTCCACTTGCTCAGATTGAGTTCCTAGATTTTGATGAGGTAGAATTCTCAAAAATTGCAT CTCAATTTTATAGCTCTTGAAAACTTGTCTGACAAACACGGTGATTGGTTTTCTAGATAATGGGTCCAGATGATTTGATG AATGAAGAGACTGGGCCTGAACCTAGTGGCAGTCTGTCAGACCGCAAAACATCACTTTCATCCAACCACCCTGATGTTTT AGGAGTTAATCAACTCTTGGAATCGGTAAAATCTGATACACTTTTAATTCTAGAATCTAGCTGATTGGAATGTGTTTGAA TTTCAATTCTATCTTTATACTTCTGCCCGAGAATGGATACTGTTTCTTCTTTCCTTAAAGATACTATGGGCATTATTGCA TGGACAGGTTTTGGAAACCGCACGGCAAGTTGCAAGTTTCTCCACTTCCTCTACTCCTCTACCTTATGACCAAATGAAGA ACCAGTGTGAGGCCCTTGTAACAGGGAAACAACAGAAGATGTCAGTCATTCACAGTTTCAAGCACCAACAGAAGACTAAG GCCATAGTTCTTTCAAGTAAAAGTGAAGTAGAAGTTCCCCCTCTACCTTTTAAGGTCAGAAACTTTTACAAAATTTATTT TTTCAGTATTAGAAAAGTGTATGTTATGAATGAATATATCTTCAGGATGTATTTGGATTTCCTGGTTTAGTATCTTAGGT AGGGCCCGAACTAGTTATTGACCAAAATTTAATTATTAAAAAAGTTTAAATAAGTTTAAATAAGTTTTTAGTCCTTCATT TTATTCTTAGATTTTGTTTTAGTCTCTACCATTTAATTTTCATGGTTTTCATCTCTACTCTTACATATAATTTTAGACTC AGTCCTCACTGTTAATATCTCACATTTGTTAACGGGTGATGTAGCTAACAGGGAGTCTTGTTATCATTGCAACATGTACA AAATAATTTCATGTGACCCAATTTTGTTGGCAAGTTAGATTTGATAACTAGCTCTATTAATAAAAAAAATCTCACTGACA CATGAGGTCTCCCCAAGTTGAATTGCATGGCAGTGAGAATTTTTTATTAATAGCTAGCCATTAGACCTGACTATTAAGTA AAATAGGTCACATAAGATTACTCTGGCCACGTGTTAATGTTGCTGTAACTCCTTGTTAGCCACATCACTGGTTAATAGTA AGATATTAACATTGGGGGACTGAAAACAAAATTATATCTAAAAGTAGAAGTCAAAACCCGTTTTCATGTCTTCCTTTTTA GTCACATACGATTATCTCTCAATTTCTCTTTGTTTTCTCGTTCTATCTCTCTCCTCCGCACCTCAGAAAAATAGGGTGTG AAAATATAGTTAACCTTATTTGTCTGTAATGTGTCATTGTGTAGGCACTAGAATATTCAAAAGGTGATTTGAAGTTAGTG TCTCAGAAGCAACTTAAAGTGCAGGATCAAGTCCCCCTCCTTTCACATGACCACGTGCAGCAAAATTCTTTGATATTACC ACCTTCAAGCCCCTATGATAAATTCTTGAAAGCTGCCGGATGTTAATGAAACAAGATTGCAATAGATGCCATTTTTTCAT TCTTTGCGATGATGTAAACTAAATGTTTCTTTACATAGTTTCTACCATTCATATCCATAGTATGTGAAATGTGCAGGCGA ATAATTTTTTTTTTTTTTTTACTTTTCTTGAGAGGTGGATGTTTCTGTCCAGCAAATGTATGATTTTGTCTATAGACTTT AGTAATATTTGTCAATATTTAAAGGTTTAGTGAATAAAGTCGTAGTGAATGTGATTTATTGTTAGAAGTAAAGTTTACTT GTCATTGATTCAAAGGAAAACTTGACAAAATGGACATAAGAAACTTCATGTAAGTTTTTA
CDS sequence (LotjaGi3g1v0294300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGTTAAAGGAGGCTTACAGCCATCTCGTAGGAGGTCTCTTTTTACCTTGGCTTCGTACATGCTTATATTCTCTGC AAAGGCAGGCAATTTCCCTGATCTAATTCCAAAAGTTAAAGCGTCCCTGACAGAGGCAACAGTAGATCCTTTTCTTGAAC TAGTCGATGATATTCGGCTGCAGGCTGTTTGTATAGAATCAGAGAGGATAGTTTATGGTTCTCAGGAAGATGAAGTTGCT GCTATGAAGTCACTTTCAGCTGTAGCATTGGATGACAAGCTGTTGAAAGAGACTGTAATATCATACTTTCTGACTAAATT TGCAAAATTATCTGAGGATGAGTTGTCCAGCATAAAGAATCAACTTCTACAGGGTTTCTCCCCAGATGATGCATATCCAT CGGGACCTCCCTTGTTTATGGAGACACCAAGGCATTGCTCTCCACTTGCTCAGATTGAGTTCCTAGATTTTGATGAGATA ATGGGTCCAGATGATTTGATGAATGAAGAGACTGGGCCTGAACCTAGTGGCAGTCTGTCAGACCGCAAAACATCACTTTC ATCCAACCACCCTGATGTTTTAGGAGTTAATCAACTCTTGGAATCGGTTTTGGAAACCGCACGGCAAGTTGCAAGTTTCT CCACTTCCTCTACTCCTCTACCTTATGACCAAATGAAGAACCAGTGTGAGGCCCTTGTAACAGGGAAACAACAGAAGATG TCAGTCATTCACAGTTTCAAGCACCAACAGAAGACTAAGGCCATAGTTCTTTCAAGTAAAAGTGAAGTAGAAGTTCCCCC TCTACCTTTTAAGGCACTAGAATATTCAAAAGGTGATTTGAAGTTAGTGTCTCAGAAGCAACTTAAAGTGCAGGATCAAG TCCCCCTCCTTTCACATGACCACGTGCAGCAAAATTCTTTGATATTACCACCTTCAAGCCCCTATGATAAATTCTTGAAA GCTGCCGGATGTTAA
Protein sequence (LotjaGi3g1v0294300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVKGGLQPSRRRSLFTLASYMLIFSAKAGNFPDLIPKVKASLTEATVDPFLELVDDIRLQAVCIESERIVYGSQEDEVA AMKSLSAVALDDKLLKETVISYFLTKFAKLSEDELSSIKNQLLQGFSPDDAYPSGPPLFMETPRHCSPLAQIEFLDFDEI MGPDDLMNEETGPEPSGSLSDRKTSLSSNHPDVLGVNQLLESVLETARQVASFSTSSTPLPYDQMKNQCEALVTGKQQKM SVIHSFKHQQKTKAIVLSSKSEVEVPPLPFKALEYSKGDLKLVSQKQLKVQDQVPLLSHDHVQQNSLILPPSSPYDKFLK AAGC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 13 | 13 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 4 | 324 | 321 | 3.8E-175 | – | |
| PANTHER | 4 | 324 | 321 | 3.8E-175 | – | |
| Phobius | 14 | 25 | 12 | - | – | |
| Phobius | 26 | 29 | 4 | - | – | |
| Phobius | 30 | 324 | 295 | - | – | |
| MobiDBLite | 163 | 191 | 29 | - | – | |
| MobiDBLite | 173 | 191 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0294300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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