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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0298200 |
| Transcript ID | LotjaGi3g1v0298200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cell cycle checkpoint protein RAD1; TAIR: AT4G17760.1 PCNA domain-containing protein; Swiss-Prot: sp|Q9QWZ1|RAD1_MOUSE Cell cycle checkpoint protein RAD1; TrEMBL-Plants: tr|V7CHL1|V7CHL1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0298200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:61986718..61989921) extracted from Lotus japonicus Gifu genome v1.2.
TGACCACCTGGTCTTAACTACGTAACAAGCTGCGCGCCCTAATTTCATTTCTTTCCACATTTCACTGAGCTCGGGTTCCG CTTCTAGAAAGGGAAGAATGAGCTTCTCCGGCATGGAGGAGGAGGACGAAGCCCCAGACGTCTTGTGCCACCTCGAAAAC GTTCAAGGCTTAGTCGACGCCCTCACCGCCGTTCGATGGAAGCGCCACCAGGTAACCACCACCTTCACCCTCCATTCCAG CAACCCATAAACTTCACCTAACTCTTAACTAACTGCAGGACGCGGTTTTAGAACTGTCCGAACACGGCATTGTCTTGATC GTTGAAGAAAGCGGTTGCCTCCAAGCCAAGGTTTATCTCAAACGAGAGGTACCTTACCAATTACCATTTCCCTTTCATTT AATTGATTAATTGATTCCCAGTTGATTCACTTTTTGTTGAATTCGCAGCTTTTCATTCGCTATGATTACAACGCACAAGC ACGACCTCGTTTCGGGGTGAGTTTGGGGCTTTTTGTGGATTGCTTGAATGCTTTCTCGGTTCATGGCCACTCCAGTGTGA TTCAGATTCAATATCCAGGTCCTGACATGCAGGTTCTTCTCAAGTATGGTGCCTCTCTTTTGATTTTTCATTCAAATGTA GAGCATCATCTACATTAGTAGCACATTAACATTTTCTAGGTTATGCTTTGGACACACAAATGCAGTGTTAATTGTTTACT TATATGTCATTAGACATCACAGTAATGGTTTTAAATATTATGGTTGCGGTCGCGGTTGTAGAGACTTAAAAATTCGTGAT ATTGAGGCTTCAATAATGGTTGCGACAACAATTTTTATATTAACTATAGGCATATTGACATTTTCTGTTAACAAATGACA CTTACGTGCTCTTCCGTTAGCAAATTCAGGGATGAAAAGCATGTTATTTTTGGCGCTAAACAATTAGAAGGAAAAAAGTA AATGAGTGCATACAGATTGGACGCCATTTGCTTCCTTGCTTCTCGTATGCTAGTCAACTAAATATGCTTTCTTTCTACCA TTCTTATGTGTTAAATTTTCTTTTATGCATGTTTGCAAAACGGGTTATTGAAAAAGTCATGATTTAAGAAAACTGATCTA GCATGAGACATATGCCTTCGTGGTGAAATTCATCATGCTACCAAGTACCAGCAAATCACTTCCAAGCATAGACCGCCGTT AATTCCATGACATGGACTGTTGCAACTTCAGACAAATTTCAACATCTTCTACAACTAATTAGGTTATATTGCTTGAGATG AAATTGGCTGACAGAAACAAAAAAATTATTGATTAGAGATTGAAGATTAGAACTTGAAAGCTTTTTTAATCCTCTACATT TGTTAATTACTATATTGTAACAAATCTTTCACAGAATGGATTTTTCATTGTCAAGTAAGAACCTGTGGTTAAATTTCATA TTCCATTCTGAGTGATAGCTATAATGATTGTTTACTGAATAGGATTCTTGATCACCAACATTCTTTATAGCTCTACAAGA AAACAACACTATATAATTGTCTTAACTATGTCTTAAATGTATTTTCTCCACTTCTTTAGATCTGTAGATTCGCCGGATGC CAGTATTTGTGCAGAGATCAGAACAAGGATTCCTGATACAGTTGCGTGGGACTACAATTTTGAACCTGCTGGGACAAACC CTTTAACCTTCACTGTTAAGGTATGGCATAAATTTATTGTTCTCCTTTAGATTTCCTCTTTTTGTTTTTTTTTTTCAAAA AATATGATTACCAATTCCCACCCCTGTGGACCTTTTCTGAAGTTCTGGCTCACTAAATAGTTCAACAATTAGATTGCTAG TTAATGTCTTAGCAATTCACTCTGCATTTGTGAAATTCATGATAGTAATTATTGCTCATGAATTCTGCAATAAGTTAGGA TTTAAGCGTATTTCGTTTTAAACCTAGACTCTATGCATATACATGTTTTCCTACAGTTGATACTTGAGGGAGAACAGCCT TGCATTTTGTACACAATTAACTGATATTTTGAATATTGATCTACACCTAGTCTGCAGCTCTAAAGGAAGCTATTGAGGAT CTTGAATGGCCTGGATCAAGCATACAGATAATTCTAGAGCCCGATCCTCCTTCTGTCACAATGAGAGCTGAAGGACATGG AGACTTGCAGGTTTGTATTGTTTTGGACTCTAATAGTTACATGCTTGTTGCCTTGAAATTTGAATCCGTTATAATCACTT TTTCTTTTTCTTTTTTTCAGATAGACTTCATGTATTATGTGAATTCCGATCTCTTGGCAGCATTTCAGTGTGACAATCAC ACTTCTTTCAAGTATTTCTTTGTTCTTTTAAAAAATGATTACTTACATGTAAAGTACCATTCCCCTGCCATCAATTTGAT TGTCATTTCTTTGCATATTGTTAACAGGTACAAATATAAGTTCCTCAGAGCAACAACTTCTAATATACCTAACAGTGTTA TTAAAGAAAACAGAGGAAGCAAGTTAAGCATTGGGAGAGGAGGAATGTTAAAAGTTCAGCATCTGGTTTCAATTGCCAAA CCATCCGCCTCACACACACATGTCGATTCTGCAGGCTATCAACAACCAGGTCGAATAGCTCATATTGAATTCTTTCTGAA ACCAGAGGAAAGTGAGGACTAAACGAATGATTAATAGGCAGAATCAAGGAAAAATGTGCATGATCATTTTCAATATGTTG CCTTTCAAACCCATTCCAAAAAAGGTTCTCTAAAAGCTTTCTTTGTATAGTTATAAACCACTAATTTTGCAGAAGAAAAT GTCTTTAGTTGTCTTGCGAATATGCAAAGTGGCTTGTTTCTCATCAAACAGGTAGTTTAGCAGGAAATTCCCGTTTCATG TGTTTACTTTCATTTTCTTGTTCATAGCTCAAGCAGCAATTCATCCATCAAATGTATGTTTTTAATCTTTGGCAGATGAT TCTCAATCATTTGCTGAGTAAATTCACAATTTCAAAACCCTCCTTTGAGGTGTGTGATGGAACTTATGATTCAGGAAAAC CTTTGATGACTTTTTTCATAAAATCCCTGTCCATTTTTCCAGTCCTCAGTTGAGGAAAAGTTATCACAGCTAACCTATTT AACATGAGGCAACGCCCTGGCGAGATATACTAAGAAACAAAAATAAAGAGTAATTTATTGTAATTTTAAAAGTTTGGAAG AGTC
CDS sequence (LotjaGi3g1v0298200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTTCTCCGGCATGGAGGAGGAGGACGAAGCCCCAGACGTCTTGTGCCACCTCGAAAACGTTCAAGGCTTAGTCGA CGCCCTCACCGCCGTTCGATGGAAGCGCCACCAGGACGCGGTTTTAGAACTGTCCGAACACGGCATTGTCTTGATCGTTG AAGAAAGCGGTTGCCTCCAAGCCAAGGTTTATCTCAAACGAGAGCTTTTCATTCGCTATGATTACAACGCACAAGCACGA CCTCGTTTCGGGGTGAGTTTGGGGCTTTTTGTGGATTGCTTGAATGCTTTCTCGGTTCATGGCCACTCCAGTGTGATTCA GATTCAATATCCAGGTCCTGACATGCAGGTTCTTCTCAAATCTGTAGATTCGCCGGATGCCAGTATTTGTGCAGAGATCA GAACAAGGATTCCTGATACAGTTGCGTGGGACTACAATTTTGAACCTGCTGGGACAAACCCTTTAACCTTCACTGTTAAG TCTGCAGCTCTAAAGGAAGCTATTGAGGATCTTGAATGGCCTGGATCAAGCATACAGATAATTCTAGAGCCCGATCCTCC TTCTGTCACAATGAGAGCTGAAGGACATGGAGACTTGCAGATAGACTTCATGTATTATGTGAATTCCGATCTCTTGGCAG CATTTCAGTGTGACAATCACACTTCTTTCAAGTACAAATATAAGTTCCTCAGAGCAACAACTTCTAATATACCTAACAGT GTTATTAAAGAAAACAGAGGAAGCAAGTTAAGCATTGGGAGAGGAGGAATGTTAAAAGTTCAGCATCTGGTTTCAATTGC CAAACCATCCGCCTCACACACACATGTCGATTCTGCAGGCTATCAACAACCAGGTCGAATAGCTCATATTGAATTCTTTC TGAAACCAGAGGAAAGTGAGGACTAA
Protein sequence (LotjaGi3g1v0298200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFSGMEEEDEAPDVLCHLENVQGLVDALTAVRWKRHQDAVLELSEHGIVLIVEESGCLQAKVYLKRELFIRYDYNAQAR PRFGVSLGLFVDCLNAFSVHGHSSVIQIQYPGPDMQVLLKSVDSPDASICAEIRTRIPDTVAWDYNFEPAGTNPLTFTVK SAALKEAIEDLEWPGSSIQIILEPDPPSVTMRAEGHGDLQIDFMYYVNSDLLAAFQCDNHTSFKYKYKFLRATTSNIPNS VIKENRGSKLSIGRGGMLKVQHLVSIAKPSASHTHVDSAGYQQPGRIAHIEFFLKPEESED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 299 | 293 | 2.1E-86 | ||
| Gene3D | 13 | 298 | 286 | 3.3E-46 | – | |
| CDD | 15 | 264 | 250 | 1.2839E-35 | – | |
| Pfam | 19 | 240 | 222 | 3.1E-23 | ||
| SUPERFAMILY | 155 | 263 | 109 | 8.72E-10 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | DNA damage checkpoint | A cell cycle checkpoint that regulates progression through the cell cycle in response to DNA damage. A DNA damage checkpoint may blocks cell cycle progression (in G1, G2 or metaphase) or slow the rate at which S phase proceeds. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi3g1v0298200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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