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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0298400 |
| Transcript ID | LotjaGi3g1v0298400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LEM3 (Ligand-effect modulator 3) family protein; TAIR: AT1G54320.1 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; Swiss-Prot: sp|Q9SLK2|ALIS3_ARATH ALA-interacting subunit 3; TrEMBL-Plants: tr|I3T8C9|I3T8C9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0298400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:62133474..62140084) extracted from Lotus japonicus Gifu genome v1.2.
ACAACAAACATGAACGTGACATTGAAGTTTCAGCCAGGTCCATTGTCCTCCACATTCTGGAACGTTTGGAAAAAAGAAAA AAACAAAGAACCAAAATTAGAAATAAAAAAACAAAAACAAATGAAATTGGCAGGCATGATTAACCAGTTGAATGAATTGA AAACGTTAATGCAATGTGCATTGGTATTTATTTGACTGGTCTCTGGGTCCCTCTCGTTGTGCCTTTCTCTCTCTCCTCCT TTCTTTGAAAGAAAATTCAAGAAAGACAGAGAGAGAGAAAGGGTCACCGGCCGCCCCCACCAAGCGAAACCTCCTTCCCC GTTCCTTTTCTTAATAAAAGTCAATCCGCACGCTCACCTGCTCAACCGGTAACCCTTCTTCCCCTCAATTATAACACCGT TCTTCTCTTCTCTTCTCTTTCAATCTTCATTCATTCGTTGAATTTTTCTTCTTCTTCGTTGTTCTCAATTTCTCTTCTGC GTTTCTTGAAGCTTTTTCGAAAAACTCCAAGTGTTCGATCGAATTGAATTGGATTGGATTGTGCTTCTTCGTTCATGGCT ACTCCCAGCGCAGGATCGAACGACCCCACTGCTGCTACCAGAAGACAAACCAAGAGACCCAAGTGTAAGGGTTTTTTTTT TTCCCCTTACGATGATTTTCATGTTTTTAGGGTTTAAGAGCTTAATTTTTGTTACTATGCTTTAATTTTGGTAATTTTTA TGTGTTGATGTGAATTTTGCTTTTGTAAAGGGTTGATGCAATTTTGAAGTTCATTTCTGAAGGGTTTTGGTGATCTTTGT TTTCATTCATTGACCTCTCTTAAGCACTGTTTCATGAATATATAAGACTTTGTTATGGTTTTTATTGTGTTGCTATTTTT TAGGTAAGGAAAACAGAATTGACTTGATGATATTTATTAGTTGAGCTAGTTGAGGAGTTTTTTCGATTTCGATAGTATGT TTTGATTGGGGAACAATTGCTAAGCTGACTAGAGTTCTCATTGATTTTTTTGTTGTTGTCAATTTCAGATTCTAAGTTTA CGCAACAGGAACTTCCAGCATGCAAGCCGATTCTTACACCACGAGCGGTAAATAAATCTGCGCGTATTTGTATATGCTGT CTGTGATTAATTTAATTATCTACTTAAGCTACATGCTTGTAAAAGAAGTCAATATTTACACAGTTTATTACTTTCCCTGC AGGTTATTTCAGCGTTCTTGATTGTGACCATCGTATTCATTCCTATCGGAGTTGCTTCCTTGATTGCTTCACGAGATGTA TGTATGCTTGAGCGTTTAACTGTTTTAATATTTTTTTTCTTAAAGCTCTATGTAGTATTTTATAATGCTGAGCGCTGACT TTGATTTTCTTATGGTTTATCAGGTTGTTGAAATTATTCATCGGTACGAGGCAGATTGTGTACCAGGAAACTGGTCGTCG GACAAAGTAGGATACATTCAGAGTTCTGCTGATAAAACATGCACGAGGGAGATACATGTATGGTCCCTTGACATCAATTT CTGTTCTTAGTTGTTTGACCACTAAACCTGTTCCCAAATTCATGGATTATGGATTTCAAAATTTGATGATTGTGTTTTAA ACATTGCTCTTATAGGTGGAGAAGCGTATGAAGTCTCCTATTTATGTTTACTACCAGCTTGACAACTTTTACCAGAATCA TCGCCGGTATATACCCCTTCTATTTCACTTGAATCATGCATTCCTTTTATCTGTTTCAATTCGATATTTACCAAGCTAGA GGAAATTGGATGAAAGTGGCAAAGTATCTCATGTTCTTTTTTCCATGGATCTTGACATTTTAGCTCTCGTGCTTATTTCC CTCCAACAATAATGTGCATTTCTTGTTAGTAACTGCTAACTAGGCTATAGACAAAATGGGGTCCCTCAAGAGTGGGTCTG TAGAAGGATCAGTTCACACCATTGAGCTCTGAGATATTGTTTTGTTTATGCATGTCAAAAGGATTCAACAAAGTTTTGTG CTGGCTGGCAACTATCTAACAAAATCCTCCTCATTTGTTGACAATTTTGTATATTTTTCTCATGTGATAAATGTTGTTGA GTTGCACTGCACTTTGGCTCAAATTTCATGTTTTTCCACTTTGGTTCTTAATGTGCAAAAGAGATTAATTGTTACCATTT GAGGTCGGAGAAGTAAAACTGTATTTCTGTTTCTTGTTTTCTTCTTCTTGAGTATGGCTGAGAGACTGAAAAAAAATGCT GTTTTTTGTTACCATTTTATTGTAGAAAGTTTCTGCCAACCGTTTGATCTAGCTCTTTAAACTGTCTAATGAAATTTTCT ATAGCCACTGCAAAACTATATTCAGTTCTGGAAGGAATGGATGTGATAATATGAATGTCTGTTAAGTGGTGACTGGTTAA AATGTGCACACACTACACCCACACACCCATACTCACACTATGCTACTTTACATTTCTATTCATATTTTGTTCAATGTACT AGAGCTAGAGCGATATGTTTTTATCTTCAAAAAATTTAAAAATGAAACATTGCTGTGCTTTAAATCCTTCGACAGCTCTG TTTTGCTACAATTTTTCAGTGTTCCATATTGCTGCCAAATTGTATGGGTGGAAATCTGGTTCTTATAGTGCATGTTTGAG TTTTGTATCATAGTAATTCAATGGTAACTTGAAACAGTCAGCACATATTACAATGTCGGATCTATGTATCTGTTTTCCCT TGGTTGTGATAGAGACAGGTTTAGATGTAAAGAATAAATCACAATAAATGAAAGCAGAAAAGTAACTATTTTGACAACTA AATGATGTTCATTTACAAGCTATCATCTAAAATGCCAAAAATACTTTATTAAATTATAATGATAACATTTTTGAGTTGTA GCTTTGATTGTGTTCTCCAACTTATAGAACTTCTCAGAACTATGTCAGTGATGACAATGAACTATTTGTATGAGATGAAG TTCTTAGAGACATTAAGAATGGACTTTCTTGTTTTTCATGCATTCATCTTAATCTTATATTTGGAGTAGTTTATATTTTT TGGAAAAATATATATAGTTATAGTAGTTTATTACTTAGTGTCTTTGAACGACTGCTTGCTTCTGTAATTTTCAGTCTCAA AGTGTGGTTGGCTACTTAACAGTATAATATAATGCATATAATTTATCGTACATTAGTGTTCATATTATTTTAATATGTGT ACTTTTTTTTTTTAATTTAGGTATGTTAAAAGCCGAAATGATGAGCAATTAAGGGATTCTTCAAAGGCAAACTCAACAAG TGGTTGTAAACCTGAAGATTATGTAAATGGAGTACCAATTTTACCTTGTGGGCTTATAGCTTGGAGCATGTTCAATGATA CATACAGTTTCTCCCGCAACAACAACAATTTGACAGTGAACAAGAAAGGCATCTCATGGAAGAGTGACAGGGAGCACAAA TTTGGAGATGATGTTTTCCCTAAAAATTTCCAGAATGGTACTATTATAGGCGGTGCTCATCTTAATGAAACAATACCAGT AAGTCTTGACATGATTTCAAATTTTGAATGAATTAGGCTAAGCATCCATATGTATCGTTGTCTTTATTCTAAGGTTCAGA AGCGAAAATAGAGTTGTTTTGATATGTGCAGCAGTTTAAATTTAATAACTAAGTAAATTTTTGTGCAATATATTTTTTGT GTAAATATCAGAATTGTAAAAATAAATATAGAAAGGAACATCTAAGTCAAGATTTTAATCTCTGTGAGGATCAAGTTTTT GACCTTTTAAGAATCCAGAATTCCCAGTTAAGTCCGTAGTCCATAGTCAAAAGGTCCACTGCTAGAGAACACGAGAAGCA GCTAGTGATGGACCCAAGAGTTATTGGTGCCGAGAGTCCAAAGGTCATTCAGATAGTCCAAATTTCCCTCAGCATTTTAA ATTGTTACAATTAGATTCCTTGTATTGAGCTTCAGAAACATAATGCCGAGAGTTACAGTACCCCTTCAATTCTCCTCTAC TCTGAGCGGAACTAGAAATTCAACTCTACTTTATTAAACTCTTGACAAGGACATTGCTCCACTCAAATTGGCACGCCCAG TTAATCTCTATTGCTATTTATTAGTATGGAGTTTGACTAAACCCAGTTGTCATTATAACCTCCTATCGTTTCATACACTT GTCTCAAATATTAGTATGGGTAATACTCAATGTGTTTTGAGGTCCAGATTATCCCAGCTTATGTATTTATTAGTAATTTT CTCCTAGTTGTGATCAATTCTCTTCTCACATGTTCCACGCTTTATGTTAATAATAACTGTCAATGTTATCCAAAAACATA AAAAAATAAACAGCTGACAAGTTACAACTTGGAGAGAGAATGCATTTGTGCCTATCCATCTTTTGGGACCTTTGGTCATC CAGTTTTTCATCCTTTCATGACTTTCAATAAACTAATGATGAATCACCTAGTGAACAAAAAGGCATATTGAGTTATGCAC TGATATAGCTGTCCTTTCTGATGATTTACTGTTTATTCTAAAAGCCATTGACAAATTTGGTAGTTAATGATCCATTCTGC TCCACATGCAACTCAATCATATATGTTCACTTGCTGAGTTCAATCGTGAAATAGATCAATCATTTTCGAACCATTTATTT ATATAAAATTATACATTTGTTCATCTTGTGTTGTCTCAGAATTCTCAATTGAGTTGCATGAATGAGGTAAGTTGCTCACT ATTTGAATGTTTATGGAACAGTTGAGTGAGCAGGAGGATCTTATTGTTTGGATGCGAACTGCTGCTTTGCCCACTTTTAG GAAACTATATGGGAAGATTGAGATGGATTTGGAGAAAGGTGATGTCATAAAAGTGGTATTGCAGAACAACTACAACACGT ATAGTTTCAATGGCAAAAAGAAGCTTGTACTGTCAACTACTAGCTGGCTTGGTGGGAAAAATGACTTTCTTGGCATTGCC TATCTCACTGTGGGAGGACTGAGCTTCTTTTTGTCTATGGTTTTTACCATTGTATATTTTGTCAAGCCAAGGTAAAGAAT CCCTTCTTCTTTCTACAATTCAAGTTCCTTTTGAAACCAGGCTGCTCATGGGGTTGCTTAATGGGCTTTCTTGTTTTGTT GCTTGATTTCTTACATACTGACATGACTACAAATGGTGTTGAATGCATTCACTCTATGCATACATTAGTGTACAGATCTT AAGTTCTCCTGTTCTATGATTTTCACGTTGCAACATAGTATTCATTAGCACACTGTTAGTCAATTTGATTAGAACAGATG TCATAAACCAACTATTCTAAAATTTTAAATTGTGAGGTCAAGGAACAGGTATGATTTTATATCTGGAATCCCCCTCATAT AAGAGCCATTTAGGTCTGAAACGTGAAAAATGCACAAGCCGGATCCAACCTTGTGCTGAAATTTGATGTTTATATTTAGA AAATTGTGTCTAAAGGATTGCACAATAAACCACAAGGTCATTGATGGGAACCAATGAAACAGAGAAAGGAACAGGGAATA ATGGCAGATAATTGCTAATGGAATTATGTGAAAAGGAGAAACAAACACAGTAGTATCACTACTACTCCAGAGCTAAGCTC CTATAGAGAAAGCATTTCTCTATTCACTCTTACAATAACAATACTCTCAGATACCTCTCCCCTACTAACAGAATTCCCTT TATACACAAATTCCCCTAATCCCCGTAACTAACTCTTCCTAACACCCTTTCTCACACTGCCAGCTCACTCTTCTTCTGGA TGCTTCCTTCCTTTCCCCTCCTCACATACCCGTGCCATACCTTGGGCCTTGGATTAATTGTCTCAGCCCATTCTCTATTT GGGGGCCTATCAGTCATAGAGGTCCTGATATCTTGTTGTGTCATGAACCAATAATCTTGCTCATAACACCAGTTGATATA AATAAACATCGTAATGGAGAGGTTGTTTAAATTTGTTATAAATTTGTGATGAAAATCTTGGACTATATAACTTGTGTATA TAAAATAATAGCAAAAGCTGAGAGGTTGTTTAAATTTTAAAATAAAGGAGGAGGTTGACATAGATTTTGTTGTACATGTT GTATGTTTGGTTCTGTTTCTGCCAATTACCAGTTGTTAATTCAAAAATTTATATCAGTTGAAACTGTGAAGTAGTTTACT TTATTGTGAATTCTTATATTGGTTGAAATTTTGAATATGATTAGCTCCTAATCTGTCTGTGTCTTTTCATTAGGCAACTT GGAGATCCATCGTATTTGTCATGGAACAGGAACCCAGGAGGTCACTGAGCAGAGAAACTAGTTGTGATTTGGTCTTCCAC GATTGCATATTCTACAGACTACAGTGGCAGTATAATTTTGTACATCGATGTTACTAATACATATTAGGAGTTCTTATCCA CCCCTTCCCAAAAAGATTATTTTTATTTATTTTGTCTTCTGCCTCAGGATTGGAATATCTTTGTATATTCTGAAAAATAG TGACCGATATACATGTACTTACTTTTCATACTACTTGGAAAACATATTCTGTTTGCTACACTTTCGGCCTTTTTTTATGC AAATATTAGAAATGGTATGTCTTCCTGAGGTGAAATGCTCCTTTACCGGAG
CDS sequence (LotjaGi3g1v0298400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACTCCCAGCGCAGGATCGAACGACCCCACTGCTGCTACCAGAAGACAAACCAAGAGACCCAAGTATTCTAAGTT TACGCAACAGGAACTTCCAGCATGCAAGCCGATTCTTACACCACGAGCGGTTATTTCAGCGTTCTTGATTGTGACCATCG TATTCATTCCTATCGGAGTTGCTTCCTTGATTGCTTCACGAGATGTTGTTGAAATTATTCATCGGTACGAGGCAGATTGT GTACCAGGAAACTGGTCGTCGGACAAAGTAGGATACATTCAGAGTTCTGCTGATAAAACATGCACGAGGGAGATACATGT GGAGAAGCGTATGAAGTCTCCTATTTATGTTTACTACCAGCTTGACAACTTTTACCAGAATCATCGCCGGTATGTTAAAA GCCGAAATGATGAGCAATTAAGGGATTCTTCAAAGGCAAACTCAACAAGTGGTTGTAAACCTGAAGATTATGTAAATGGA GTACCAATTTTACCTTGTGGGCTTATAGCTTGGAGCATGTTCAATGATACATACAGTTTCTCCCGCAACAACAACAATTT GACAGTGAACAAGAAAGGCATCTCATGGAAGAGTGACAGGGAGCACAAATTTGGAGATGATGTTTTCCCTAAAAATTTCC AGAATGGTACTATTATAGGCGGTGCTCATCTTAATGAAACAATACCATTGAGTGAGCAGGAGGATCTTATTGTTTGGATG CGAACTGCTGCTTTGCCCACTTTTAGGAAACTATATGGGAAGATTGAGATGGATTTGGAGAAAGGTGATGTCATAAAAGT GGTATTGCAGAACAACTACAACACGTATAGTTTCAATGGCAAAAAGAAGCTTGTACTGTCAACTACTAGCTGGCTTGGTG GGAAAAATGACTTTCTTGGCATTGCCTATCTCACTGTGGGAGGACTGAGCTTCTTTTTGTCTATGGTTTTTACCATTGTA TATTTTGTCAAGCCAAGGCAACTTGGAGATCCATCGTATTTGTCATGGAACAGGAACCCAGGAGGTCACTGA
Protein sequence (LotjaGi3g1v0298400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATPSAGSNDPTAATRRQTKRPKYSKFTQQELPACKPILTPRAVISAFLIVTIVFIPIGVASLIASRDVVEIIHRYEADC VPGNWSSDKVGYIQSSADKTCTREIHVEKRMKSPIYVYYQLDNFYQNHRRYVKSRNDEQLRDSSKANSTSGCKPEDYVNG VPILPCGLIAWSMFNDTYSFSRNNNNLTVNKKGISWKSDREHKFGDDVFPKNFQNGTIIGGAHLNETIPLSEQEDLIVWM RTAALPTFRKLYGKIEMDLEKGDVIKVVLQNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLSFFLSMVFTIV YFVKPRQLGDPSYLSWNRNPGGH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| Phobius | 1 | 42 | 42 | - | – | |
| PIRSF | 2 | 339 | 338 | 3.9E-145 | ||
| PANTHER | 17 | 342 | 326 | 1.2E-189 | – | |
| PANTHER | 17 | 342 | 326 | 1.2E-189 | ||
| TMHMM | 43 | 65 | 23 | - | – | |
| Phobius | 43 | 65 | 23 | - | – | |
| Pfam | 63 | 327 | 265 | 2.9E-91 | ||
| Phobius | 66 | 300 | 235 | - | – | |
| TMHMM | 301 | 323 | 23 | - | – | |
| Phobius | 301 | 323 | 23 | - | – | |
| Phobius | 324 | 343 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi3g1v0298400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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