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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0298400 |
| Transcript ID | LotjaGi3g1v0298400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LEM3 (Ligand-effect modulator 3) family protein; TAIR: AT1G54320.1 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; Swiss-Prot: sp|Q9SLK2|ALIS3_ARATH ALA-interacting subunit 3; TrEMBL-Plants: tr|I3T8C9|I3T8C9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0298400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:62135011..62139133) extracted from Lotus japonicus Gifu genome v1.2.
ATAGTATGTTTTGATTGGGGAACAATTGCTAAGCTGACTAGAGTTCTCATTGATTTTTTTGTTGTTGTCAATTTCAGATT CTAAGTTTACGCAACAGGAACTTCCAGCATGCAAGCCGATTCTTACACCACGAGCGGTAAATAAATCTGCGCGTATTTGT ATATGCTGTCTGTGATTAATTTAATTATCTACTTAAGCTACATGCTTGTAAAAGAAGTCAATATTTACACAGTTTATTAC TTTCCCTGCAGGTTATTTCAGCGTTCTTGATTGTGACCATCGTATTCATTCCTATCGGAGTTGCTTCCTTGATTGCTTCA CGAGATGTATGTATGCTTGAGCGTTTAACTGTTTTAATATTTTTTTTCTTAAAGCTCTATGTAGTATTTTATAATGCTGA GCGCTGACTTTGATTTTCTTATGGTTTATCAGGTTGTTGAAATTATTCATCGGTACGAGGCAGATTGTGTACCAGGAAAC TGGTCGTCGGACAAAGTAGGATACATTCAGAGTTCTGCTGATAAAACATGCACGAGGGAGATACATGTATGGTCCCTTGA CATCAATTTCTGTTCTTAGTTGTTTGACCACTAAACCTGTTCCCAAATTCATGGATTATGGATTTCAAAATTTGATGATT GTGTTTTAAACATTGCTCTTATAGGTGGAGAAGCGTATGAAGTCTCCTATTTATGTTTACTACCAGCTTGACAACTTTTA CCAGAATCATCGCCGGTATATACCCCTTCTATTTCACTTGAATCATGCATTCCTTTTATCTGTTTCAATTCGATATTTAC CAAGCTAGAGGAAATTGGATGAAAGTGGCAAAGTATCTCATGTTCTTTTTTCCATGGATCTTGACATTTTAGCTCTCGTG CTTATTTCCCTCCAACAATAATGTGCATTTCTTGTTAGTAACTGCTAACTAGGCTATAGACAAAATGGGGTCCCTCAAGA GTGGGTCTGTAGAAGGATCAGTTCACACCATTGAGCTCTGAGATATTGTTTTGTTTATGCATGTCAAAAGGATTCAACAA AGTTTTGTGCTGGCTGGCAACTATCTAACAAAATCCTCCTCATTTGTTGACAATTTTGTATATTTTTCTCATGTGATAAA TGTTGTTGAGTTGCACTGCACTTTGGCTCAAATTTCATGTTTTTCCACTTTGGTTCTTAATGTGCAAAAGAGATTAATTG TTACCATTTGAGGTCGGAGAAGTAAAACTGTATTTCTGTTTCTTGTTTTCTTCTTCTTGAGTATGGCTGAGAGACTGAAA AAAAATGCTGTTTTTTGTTACCATTTTATTGTAGAAAGTTTCTGCCAACCGTTTGATCTAGCTCTTTAAACTGTCTAATG AAATTTTCTATAGCCACTGCAAAACTATATTCAGTTCTGGAAGGAATGGATGTGATAATATGAATGTCTGTTAAGTGGTG ACTGGTTAAAATGTGCACACACTACACCCACACACCCATACTCACACTATGCTACTTTACATTTCTATTCATATTTTGTT CAATGTACTAGAGCTAGAGCGATATGTTTTTATCTTCAAAAAATTTAAAAATGAAACATTGCTGTGCTTTAAATCCTTCG ACAGCTCTGTTTTGCTACAATTTTTCAGTGTTCCATATTGCTGCCAAATTGTATGGGTGGAAATCTGGTTCTTATAGTGC ATGTTTGAGTTTTGTATCATAGTAATTCAATGGTAACTTGAAACAGTCAGCACATATTACAATGTCGGATCTATGTATCT GTTTTCCCTTGGTTGTGATAGAGACAGGTTTAGATGTAAAGAATAAATCACAATAAATGAAAGCAGAAAAGTAACTATTT TGACAACTAAATGATGTTCATTTACAAGCTATCATCTAAAATGCCAAAAATACTTTATTAAATTATAATGATAACATTTT TGAGTTGTAGCTTTGATTGTGTTCTCCAACTTATAGAACTTCTCAGAACTATGTCAGTGATGACAATGAACTATTTGTAT GAGATGAAGTTCTTAGAGACATTAAGAATGGACTTTCTTGTTTTTCATGCATTCATCTTAATCTTATATTTGGAGTAGTT TATATTTTTTGGAAAAATATATATAGTTATAGTAGTTTATTACTTAGTGTCTTTGAACGACTGCTTGCTTCTGTAATTTT CAGTCTCAAAGTGTGGTTGGCTACTTAACAGTATAATATAATGCATATAATTTATCGTACATTAGTGTTCATATTATTTT AATATGTGTACTTTTTTTTTTTAATTTAGGTATGTTAAAAGCCGAAATGATGAGCAATTAAGGGATTCTTCAAAGGCAAA CTCAACAAGTGGTTGTAAACCTGAAGATTATGTAAATGGAGTACCAATTTTACCTTGTGGGCTTATAGCTTGGAGCATGT TCAATGATACATACAGTTTCTCCCGCAACAACAACAATTTGACAGTGAACAAGAAAGGCATCTCATGGAAGAGTGACAGG GAGCACAAATTTGGAGATGATGTTTTCCCTAAAAATTTCCAGAATGGTACTATTATAGGCGGTGCTCATCTTAATGAAAC AATACCAGTAAGTCTTGACATGATTTCAAATTTTGAATGAATTAGGCTAAGCATCCATATGTATCGTTGTCTTTATTCTA AGGTTCAGAAGCGAAAATAGAGTTGTTTTGATATGTGCAGCAGTTTAAATTTAATAACTAAGTAAATTTTTGTGCAATAT ATTTTTTGTGTAAATATCAGAATTGTAAAAATAAATATAGAAAGGAACATCTAAGTCAAGATTTTAATCTCTGTGAGGAT CAAGTTTTTGACCTTTTAAGAATCCAGAATTCCCAGTTAAGTCCGTAGTCCATAGTCAAAAGGTCCACTGCTAGAGAACA CGAGAAGCAGCTAGTGATGGACCCAAGAGTTATTGGTGCCGAGAGTCCAAAGGTCATTCAGATAGTCCAAATTTCCCTCA GCATTTTAAATTGTTACAATTAGATTCCTTGTATTGAGCTTCAGAAACATAATGCCGAGAGTTACAGTACCCCTTCAATT CTCCTCTACTCTGAGCGGAACTAGAAATTCAACTCTACTTTATTAAACTCTTGACAAGGACATTGCTCCACTCAAATTGG CACGCCCAGTTAATCTCTATTGCTATTTATTAGTATGGAGTTTGACTAAACCCAGTTGTCATTATAACCTCCTATCGTTT CATACACTTGTCTCAAATATTAGTATGGGTAATACTCAATGTGTTTTGAGGTCCAGATTATCCCAGCTTATGTATTTATT AGTAATTTTCTCCTAGTTGTGATCAATTCTCTTCTCACATGTTCCACGCTTTATGTTAATAATAACTGTCAATGTTATCC AAAAACATAAAAAAATAAACAGCTGACAAGTTACAACTTGGAGAGAGAATGCATTTGTGCCTATCCATCTTTTGGGACCT TTGGTCATCCAGTTTTTCATCCTTTCATGACTTTCAATAAACTAATGATGAATCACCTAGTGAACAAAAAGGCATATTGA GTTATGCACTGATATAGCTGTCCTTTCTGATGATTTACTGTTTATTCTAAAAGCCATTGACAAATTTGGTAGTTAATGAT CCATTCTGCTCCACATGCAACTCAATCATATATGTTCACTTGCTGAGTTCAATCGTGAAATAGATCAATCATTTTCGAAC CATTTATTTATATAAAATTATACATTTGTTCATCTTGTGTTGTCTCAGAATTCTCAATTGAGTTGCATGAATGAGGTAAG TTGCTCACTATTTGAATGTTTATGGAACAGTTGAGTGAGCAGGAGGATCTTATTGTTTGGATGCGAACTGCTGCTTTGCC CACTTTTAGGAAACTATATGGGAAGATTGAGATGGATTTGGAGAAAGGTGATGTCATAAAAGTGGTATTGCAGAACAACT ACAACACGTATAGTTTCAATGGCAAAAAGAAGCTTGTACTGTCAACTACTAGCTGGCTTGGTGGGAAAAATGACTTTCTT GGCATTGCCTATCTCACTGTGGGAGGACTGAGCTTCTTTTTGTCTATGGTTTTTACCATTGTATATTTTGTCAAGCCAAG GTAAAGAATCCCTTCTTCTTTCTACAATTCAAGTTCCTTTTGA
CDS sequence (LotjaGi3g1v0298400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTCTCCTATTTATGTTTACTACCAGCTTGACAACTTTTACCAGAATCATCGCCGGTATGTTAAAAGCCGAAATGA TGAGCAATTAAGGGATTCTTCAAAGGCAAACTCAACAAGTGGTTGTAAACCTGAAGATTATGTAAATGGAGTACCAATTT TACCTTGTGGGCTTATAGCTTGGAGCATGTTCAATGATACATACAGTTTCTCCCGCAACAACAACAATTTGACAGTGAAC AAGAAAGGCATCTCATGGAAGAGTGACAGGGAGCACAAATTTGGAGATGATGTTTTCCCTAAAAATTTCCAGAATGGTAC TATTATAGGCGGTGCTCATCTTAATGAAACAATACCATTGAGTGAGCAGGAGGATCTTATTGTTTGGATGCGAACTGCTG CTTTGCCCACTTTTAGGAAACTATATGGGAAGATTGAGATGGATTTGGAGAAAGGTGATGTCATAAAAGTGGTATTGCAG AACAACTACAACACGTATAGTTTCAATGGCAAAAAGAAGCTTGTACTGTCAACTACTAGCTGGCTTGGTGGGAAAAATGA CTTTCTTGGCATTGCCTATCTCACTGTGGGAGGACTGAGCTTCTTTTTGTCTATGGTTTTTACCATTGTATATTTTGTCA AGCCAAGGTAA
Protein sequence (LotjaGi3g1v0298400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSPIYVYYQLDNFYQNHRRYVKSRNDEQLRDSSKANSTSGCKPEDYVNGVPILPCGLIAWSMFNDTYSFSRNNNNLTVN KKGISWKSDREHKFGDDVFPKNFQNGTIIGGAHLNETIPLSEQEDLIVWMRTAALPTFRKLYGKIEMDLEKGDVIKVVLQ NNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLSFFLSMVFTIVYFVKPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 216 | 216 | 4.4E-134 | – | |
| Phobius | 1 | 187 | 187 | - | – | |
| Pfam | 1 | 216 | 216 | 1.0E-82 | ||
| PANTHER | 1 | 216 | 216 | 4.4E-134 | ||
| Phobius | 188 | 213 | 26 | - | – | |
| TMHMM | 191 | 213 | 23 | - | – | |
| Phobius | 214 | 216 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi3g1v0298400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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