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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0299900 |
| Transcript ID | LotjaGi3g1v0299900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone DnaJ-like protein; TAIR: AT4G36040.1 Chaperone DnaJ-domain superfamily protein; Swiss-Prot: sp|Q9FYB5|DNJ11_ARATH Chaperone protein dnaJ 11, chloroplastic; TrEMBL-Plants: tr|V7CIF3|V7CIF3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0299900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:62567390..62568450) extracted from Lotus japonicus Gifu genome v1.2.
GATATATTTACTAAAAAGATACAAAATATAATATTACACGAAATTTAAATTATAAATAACAAAAGTCACCCATGCAGGGC ACACGGGTAATTCCGCTAGTATAGAATTAATAATTAAGATTTTTGTAAGAAAAGAGGATAACAACTTGGTCGCCAGAATA AAAATCTTAAAATCCAATTGCACACAATATGACAGTTATACTGGGACCCATACCCATTACTCTGTCCACACTTCCTCTCC TCTTTATATACAAACCTCAATCCTAATCCACATCATTCAATCCCCAATTTCTCTTCTCTAATCACACGTAACATGCTCTC ACCATCTTTTACCACCGCCACCACTTTCTCCGGCCAAATTGCAACTTCGCCGATAGGCTACGTCAGATCCCGGCCAGTAA TCGCATTCGCCACCGCCACCGAAGCAGACTACCGACCTACACCTTCTTTGTATCTGAGCACCCACGGCGACGGCGACATG GCTTCCTGCACTTCGCTTTACGAGATTCTCGGAATCGCCGCCGCCGCGTCAGACCAGGAGATCAAGGCGGCGTACCGGCG GCTTGCTAGAGTCCGTCACCCTGACGTGGCGGCGGTTGATCGGAAGGACTCGTCGACAAACGAGTTCATGAAGATCCACG CTGCATACTCGACGTTATCTGATCCCGAGAAGCGTGCCAGCTATGATAGGAGCATGAACCGGCGGAGGCGGTCGCTGACG GCAACGGTGACGCCGAGATTATCCGGTTACAAAGGACGGAACTAGGAAACAGACCAGTGCTGGTAGCGGATCTGAGGCGT AGTTATTGGATCACCTTTGATTTTACTTATTACTAATTAATTAATTAATAGTTATTGACCAGATTGTGTACTAATATTGT ATATGAGTACAATTGTGTGTACAAATATTGTGTATAAGTACGATTGTGTATACATACATAAGAGAATCAGTTGTTGAAAT AATGTGTTTTATGACGATTTTAAACCGTCACAAATGTAGGTGTTTGAGGTATTGGATATATTAATTTTAAAATTGAGCAG CTGAGATTGATTGGGATTAAA
CDS sequence (LotjaGi3g1v0299900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCTCACCATCTTTTACCACCGCCACCACTTTCTCCGGCCAAATTGCAACTTCGCCGATAGGCTACGTCAGATCCCG GCCAGTAATCGCATTCGCCACCGCCACCGAAGCAGACTACCGACCTACACCTTCTTTGTATCTGAGCACCCACGGCGACG GCGACATGGCTTCCTGCACTTCGCTTTACGAGATTCTCGGAATCGCCGCCGCCGCGTCAGACCAGGAGATCAAGGCGGCG TACCGGCGGCTTGCTAGAGTCCGTCACCCTGACGTGGCGGCGGTTGATCGGAAGGACTCGTCGACAAACGAGTTCATGAA GATCCACGCTGCATACTCGACGTTATCTGATCCCGAGAAGCGTGCCAGCTATGATAGGAGCATGAACCGGCGGAGGCGGT CGCTGACGGCAACGGTGACGCCGAGATTATCCGGTTACAAAGGACGGAACTAG
Protein sequence (LotjaGi3g1v0299900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSPSFTTATTFSGQIATSPIGYVRSRPVIAFATATEADYRPTPSLYLSTHGDGDMASCTSLYEILGIAAAASDQEIKAA YRRLARVRHPDVAAVDRKDSSTNEFMKIHAAYSTLSDPEKRASYDRSMNRRRRSLTATVTPRLSGYKGRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 149 | 145 | 1.4E-46 | – | |
| PANTHER | 5 | 149 | 145 | 1.4E-46 | – | |
| Gene3D | 51 | 142 | 92 | 1.5E-23 | ||
| SUPERFAMILY | 56 | 129 | 74 | 3.66E-21 | ||
| SMART | 60 | 120 | 61 | 2.8E-17 | ||
| ProSiteProfiles | 61 | 128 | 68 | 18.653 | ||
| Pfam | 62 | 125 | 64 | 6.4E-21 | ||
| CDD | 63 | 117 | 55 | 3.11774E-16 | ||
| PRINTS | 63 | 81 | 19 | 2.6E-14 | ||
| PRINTS | 81 | 96 | 16 | 2.6E-14 | ||
| PRINTS | 100 | 120 | 21 | 2.6E-14 | ||
| ProSitePatterns | 105 | 124 | 20 | - | ||
| MobiDBLite | 119 | 150 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0299900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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