Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0303600 |
| Transcript ID | LotjaGi3g1v0303600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP2-like ethylene-responsive transcription factor family; TAIR: AT3G54320.2 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q6X5Y6|WRI1_ARATH Ethylene-responsive transcription factor WRI1; TrEMBL-Plants: tr|I1MIG7|I1MIG7_SOYBN AP2/EREB-box binding protein; Found in the gene: LotjaGi3g1v0303600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:63320109..63325453) extracted from Lotus japonicus Gifu genome v1.2.
GTAGCTTCAAATTCAAGCCCTTTGATTAGCCCATGGTTAATTGACCCAGTTAAATTTCAACCCAAGGTTAAACCTTTCCT TCACTTCCCAACACAAACCCCAAATTTACAAATTCAATTTGTACAATTTTTTTAAAAAATGTTTCAAATAATTAAATAAT TTTGCCCTCCTTTAAAAGCTCACCCAATTTCCTTTCCTTCTTTCACTGTCCCATTCTCTTCTCTCCTTTTTCTCTATGTT TTGGTAAACCACTTTAGGTAACCAGATTGCTACTACTAGTACTACAAATACAAAGATGCCATCATAGAATCTACCAGAAG AGGGAAAGAGAAAAAAGAGAGAGACTTGGTCACACACAAAGGTTACTTTTGTCTAATTCATCTCCACACACATTGTGTTT TTCTTTTGGGCAGAGATTAATTGAGGCCCAAAAAATGAAGAGGTCTCCAGCAACTTCTTCCTCTTGTTCTTCTTCATCTT CCTCTGTTGGGTTTGGAGGTCCCATTCAATCAGAGAAAAGAAGGGCTAATAAGCATCCCAAAAGAAATCTCAATGTACAG AAATGCAAGCAGAATCCAACCACTGGTGGTAGCAGAAGAAGCTCCATTTACAGAGGAGTTACCAGGTTAATTATTTCATT AATCAATTGTTTTGATTTCTAATGCATTTTCCTTGATGGGTTTTCTGCTACATTTGCATGTCACTGATTTTTTCTTTTTG GGTCATCATCAGGCATAGATGGACTGGGAGGTTTGAAGCTCACCTTTGGGATAAGAGTTCCTGGAACAACATACAGAACA AGAAGGGAAGACAAGGTAATTTTTATTTTTTTTCTCAGAAAATTGTGATTAAAAAATTAATTAAGCCACAAATAAATAAA GACAAGGGAGAGAAAATCAAGGAGATCTGTGATGTATTTTTAATTATTATTTAAGCTCTGTGTTCTTTTTTAATGGTGAT TATTATTATTTTTCTGTTCTGACCGTGTTTTATTCCTCACAATCTCTGTCAATGCAACGATCACATTTGATACAACAATT GGGGATGCTCTAGTTTATTTGGGTAAGTTGAAGCCTTTTCTCATGCAATTTGATCCCCACACAATCCTAGTCAGCTTTTC AAATTTCTGAATTATTTTATGGTCAAGAAAGATTCTGATCATGATTTTGTCACCTGGACCCAATTCTCTAATTTTTTTCA ATTTCAATTTTTCTTTTTGTTCATGAAGGGGCATATGACACTGAAGAAGCAGCAGCGCGTACCTATGATCTTGCAGCACT TAAGTATTGGGGCAAAGATGCAACCTTGAATTTCCCGGTACACTAATTTAATTATAATCAATAGTTGCGATTACAAAATT GCAGACAAATGCAGGTTGATGCAACCACAATTAGGATTGATGTGGGTCGCAATTGTGGTTGCAGAGCCCAATTCAAAAGC ATGAATATAATAATAACAATGTTGTTGATTCTGAGTATATTTTTGGGATGAATGGTGCAGATAGAAACGTATTCAAAGGA TGTTGAGGAAATGGACAAGGCGTCAAAAGAGGAATACCTGGCTTCTTTGCGGCGACAAAGCAGTGGTTTTTCTAGAGGCA TTTCTAAGTACCGAGGGGTAGCCAGGTTAGTAGCAATGTAGCATTCAAATCAATGCACATTGTTATGGAAAATTCACATT AACTTACTGATGTAATTAATTAATACTAATCTTACTTAAATTTGAATAGGCATCACCATAATGGACGCTGGGAAGCTAGG ATTGGAAGAGTATGTGGCAACAAGTACCTCTATTTGGGGACATATAGTAAGTTGTCACTTTCATTTATTTCTTCTGCATC ATGATTCTAGATAATTCTTATTCTTATAATTACTGTGAAATTCAGAAGGGAAAATGCAAAGAAAGTTCAATTTCTCTTTT TATAGAACAAAGAAAGCCTGGTAAAGATGTCACGCGGCATGTCCTAATTTTCCGTTTGTGTTCCATGAAGTTTCCTTTTC CACTAGCAAACAAAATTGGTTCAGCTGCCTCATCAAAAAACCACAAATTGCACCCTTTTTTTCACCTTCATTCCACAAAT TTTCACCCTTTTTGATGCTGCTAATCTTCCAATTTAATTTTAAGAACACCAAGTAGTCAACTACTGTTAGTTCACCCGGT AAAGACGAACCACTTCCCTTTAAAAGGCTGTGTTATATTCTTACTGCCGATGTGAGGAATATATTGATGGGCGACCTATG AGTATTCTATTATAATGGCCGGAGCTAAATTCAACCAATTTTTTTTTTTAGAATTATACCCATTCCATTGGAATAATACT CAATGGGCCCCACTTCTTACCTCATATTTTTTCTTACCGTACAAAACTTGTGACTTGCTCTAAATAACAGTTTTTAAAGT AAATGACAGAAATGCACTGTGAGGTTCCTAGATAGCAGCACATGTAACAGCATATTTTACCGCATTACAGCTAGGAAAAC TGCAGTTCTCATAATTAATGTGAATGAATTTGGTTAAAGCTGCTGTGTTAGGATGCATGTGTGAGTTGTGCTCCTTGCAT GAACTGTAGCTGCTGCAGTACTCTTGTCCCTTTGCTGCAGCAGTATACATCAAAATTAGTGTATGAAAGGAAAGTTACAT ACACCTGCAATAAGTAATAAGTATATTTTCTCTGCTTTGTTTTTCTTATATATGAAAAGCTCTTATTAGGAAAATTTAAA AAATGAAATATATTCATGAAAAAGGTATAAAGTTTAATATATTATTAGAGGGTTAAATATGTTGTTGGTCCTTACAGAAT CATGAATTATTGATTTTTATCCCTTGAAAATTTTGCTTGAAATACATCCACAATTTTTAAAAATTCACATGTTTGAGTCT CTGAAAGGAACATTACCCAAAGAAAAAATAATTTTGAAGATCACCTTTTTTAGTAAATTTCACCCCTTGAAACTGTTTTG ATTTCAGAGGACTTAAACATATGTATTTCCTGAAACTCATGATGTGTTTCAACGATTTATTTTTGTGACCTAAATCAATA ATTTTAAATTTGACCAGGACTAAGAACATATTTAACCCATTAATAGATTTTAAAATTATAATTTTTTATAATTAAAACTC TAATTCTTGTAAAAATATTCTGAAATAGTTTTTATTTATTTATAGATGTATTCGCAGATGACTTGATAGAAAAATGTTTA TATGTCATGCTTTCAAGTTAAAAATTGTTGTGTCCTAAATTTAGGGGTCGAAACTCTACCTAATTTTGCTACAGTATTAT TTAGCTATGTATCATGCACAATTTTGTTGGCCAAGTTCAATCTAACATTTGACAAATAGAGCCCTGAACCAAGATAGGCA AGCATGAAGGAGGGTACAGCAGATCCTTGACTTTGTACTTTATGAATGTTGATGCAGAGTTCATGCAGTGTCCACAATCT CCTGCCAACATGTCGGACAAAATAATAATTTAAAAATTCCCAATCTCCAAAGCAGGAAAATGAAAAATTGTTTAGGAATT TTTTATAGTTCCCTGTTAAAAGTTAGATAAAATCAGAAAGTAAACTGGATTAGATCCGTAGAACACCAACAACCTCTACA CCCAAAAACCCAGTGGGCACGTGAATACTAATCCTGGCCTTGATTTTTCAATTTTTTTTTAAACTTTGTGAGATCCTATG TCTTAAAGTTACTTTTTACAAATTTTATTCATTTTTAATGAATTAATTAGTCACCAAACAATTTTGATTTGGAAAATAGT TAGTAATCATCTGCATAGTGCTGATACCTAAATAACATTCAATAAGTGCTATTTTGTTTGCATTCAAACATATTTGTAAG TATCATTTTTTAATTACTAATGTTGAGATAATTATTTTTTTGCTTGTTTTGAACTCTGAAGAAACTCAAGAGGAGGCAGC AGTGGCATATGACATGGCAGCAATAGAGCAAAGAGGACTGAATGCAGTGACCAATTTTGACATAAACAACTACATTGACA AAATAAAGAAGAAAAATGAAGAATGCCAACAAATAGAAGCACAAACTGCAGAAATAGCTCCCAACACCCCTGACTCTGAA GAACCAGAAGCAGAAGTAGTAGAACAGACAATTACAAACACACCCCCACCTGAGAATCTTCACATGCAACCACAGCAGCA CCAAGTTCAATACACTCATATTCCTCCAAGTGAGGAGTTCTCACTAGGCACTGTTATGGACCATGTTCTGGAGCAGGACC TGCCATGGAGCTTCATGCACTCTGGGTTGTTGCCACAGTATCATCATCAAGACCCAGACTTGTATCTGAGCAAAGCAGAG GATTTAATGGGCATGTTTGATGGTGCAGGGTTTGAGGATGACATTGATTTTCTGTTCAGCACAGAGCCTGGTGGTGAGAG TGACATCAACATCAGTGCAGGTTTAGATAGTATTGACTGTGGAGGAGATGGTGCAAATGGGGGTGCAGATGGAAGCATGG TGGATAACAAGCCGCAGAAGCACCTGTTGTCTCTTAATGCTTCACCTTCATCTACAACAACTACAGATTACAGTGTCTTG TAACTATACTCTATGATGTCTTGGGAAGGTGTTGGTTGGGAAATATTGATTAATGTTCTTGAGATTGTTGGGTTTGTTCA GTATATTGTTGGGATCAATTGTCATAGGTGGATGGGTGTTGACATAGGGTGACTTGTGAAATTGTTCATTGGTTTACTTT ACAATCCCTTGTCTTTCATTTTAGACTTTGATTTTAGAAGATCCAGAATAGTTTTTCCCCTTTTTGGGCAAGGAGATTGA GAAAGGGAATGTTCTAAAGAAATAGAACCCTTTGTTTTACAATCAAGTTTCATTTCTCTCTTCGCGTTAAGCAAAAAAAT ATTTCCTCCTTCTAAACAGAACCCTTTTCTGTTTTCCGTCAAGCCGATTGGAAACGAACCAAACAAGCTGATAATGTTCA TGCAGTATACATCTAGGAGAGGGTTCAAAATAAGTTAATTTTGGCATAGATTATTGCATCAGTGGATCATAATATACGGT TTTATTTTGTAAAAAGAAACTTTAAAAGTTATATTATATGTATAATTGGGAAAAAAGTTAATTAGGCTTTATAAGAAAAA AAAATCACAACTTAAACAGACAATGGAGACTCCAACGGGTATGAAACAGTATCAACAAGTATTTCATGAAGTATTTGAAT AACTTTAAAATTTAAATTTATCTCATAACTACATGTGTTGAGTTAGGGCATTGTTGAACACTTTCATCATATAGTAAATC CAGTCAATTATTATCAAGAAAACCTCTAGTGATACTCCAGCATGAACACCAGGTCATCACATCAG
CDS sequence (LotjaGi3g1v0303600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAAGGCGTCAAAAGAGGAATACCTGGCTTCTTTGCGGCGACAAAGCAGTGGTTTTTCTAGAGGCATTTCTAAGTA CCGAGGGGTAGCCAGGCATCACCATAATGGACGCTGGGAAGCTAGGATTGGAAGAGTATGTGGCAACAAGTACCTCTATT TGGGGACATATAAAACTCAAGAGGAGGCAGCAGTGGCATATGACATGGCAGCAATAGAGCAAAGAGGACTGAATGCAGTG ACCAATTTTGACATAAACAACTACATTGACAAAATAAAGAAGAAAAATGAAGAATGCCAACAAATAGAAGCACAAACTGC AGAAATAGCTCCCAACACCCCTGACTCTGAAGAACCAGAAGCAGAAGTAGTAGAACAGACAATTACAAACACACCCCCAC CTGAGAATCTTCACATGCAACCACAGCAGCACCAAGTTCAATACACTCATATTCCTCCAAGTGAGGAGTTCTCACTAGGC ACTGTTATGGACCATGTTCTGGAGCAGGACCTGCCATGGAGCTTCATGCACTCTGGGTTGTTGCCACAGTATCATCATCA AGACCCAGACTTGTATCTGAGCAAAGCAGAGGATTTAATGGGCATGTTTGATGGTGCAGGGTTTGAGGATGACATTGATT TTCTGTTCAGCACAGAGCCTGGTGGTGAGAGTGACATCAACATCAGTGCAGGTTTAGATAGTATTGACTGTGGAGGAGAT GGTGCAAATGGGGGTGCAGATGGAAGCATGGTGGATAACAAGCCGCAGAAGCACCTGTTGTCTCTTAATGCTTCACCTTC ATCTACAACAACTACAGATTACAGTGTCTTGTAA
Protein sequence (LotjaGi3g1v0303600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKASKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDMAAIEQRGLNAV TNFDINNYIDKIKKKNEECQQIEAQTAEIAPNTPDSEEPEAEVVEQTITNTPPPENLHMQPQQHQVQYTHIPPSEEFSLG TVMDHVLEQDLPWSFMHSGLLPQYHHQDPDLYLSKAEDLMGMFDGAGFEDDIDFLFSTEPGGESDINISAGLDSIDCGGD GANGGADGSMVDNKPQKHLLSLNASPSSTTTTDYSVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 138 | 138 | 9.6E-61 | – | |
| PANTHER | 1 | 138 | 138 | 9.6E-61 | – | |
| CDD | 25 | 86 | 62 | 4.18251E-25 | ||
| Pfam | 25 | 76 | 52 | 2.0E-10 | ||
| SUPERFAMILY | 25 | 86 | 62 | 2.75E-17 | ||
| Gene3D | 25 | 86 | 62 | 5.1E-19 | ||
| SMART | 26 | 90 | 65 | 5.2E-25 | ||
| ProSiteProfiles | 26 | 84 | 59 | 17.464 | ||
| Coils | 85 | 105 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0303600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…