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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0303600 |
| Transcript ID | LotjaGi3g1v0303600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP2-like ethylene-responsive transcription factor; TAIR: AT3G54320.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q6X5Y6|WRI1_ARATH Ethylene-responsive transcription factor WRI1; TrEMBL-Plants: tr|I1MIG7|I1MIG7_SOYBN AP2/EREB-box binding protein; Found in the gene: LotjaGi3g1v0303600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:63320109..63325453) extracted from Lotus japonicus Gifu genome v1.2.
GTAGCTTCAAATTCAAGCCCTTTGATTAGCCCATGGTTAATTGACCCAGTTAAATTTCAACCCAAGGTTAAACCTTTCCT TCACTTCCCAACACAAACCCCAAATTTACAAATTCAATTTGTACAATTTTTTTAAAAAATGTTTCAAATAATTAAATAAT TTTGCCCTCCTTTAAAAGCTCACCCAATTTCCTTTCCTTCTTTCACTGTCCCATTCTCTTCTCTCCTTTTTCTCTATGTT TTGGTAAACCACTTTAGGTAACCAGATTGCTACTACTAGTACTACAAATACAAAGATGCCATCATAGAATCTACCAGAAG AGGGAAAGAGAAAAAAGAGAGAGACTTGGTCACACACAAAGGTTACTTTTGTCTAATTCATCTCCACACACATTGTGTTT TTCTTTTGGGCAGAGATTAATTGAGGCCCAAAAAATGAAGAGGTCTCCAGCAACTTCTTCCTCTTGTTCTTCTTCATCTT CCTCTGTTGGGTTTGGAGGTCCCATTCAATCAGAGAAAAGAAGGGCTAATAAGCATCCCAAAAGAAATCTCAATGTACAG AAATGCAAGCAGAATCCAACCACTGGTGGTAGCAGAAGAAGCTCCATTTACAGAGGAGTTACCAGGTTAATTATTTCATT AATCAATTGTTTTGATTTCTAATGCATTTTCCTTGATGGGTTTTCTGCTACATTTGCATGTCACTGATTTTTTCTTTTTG GGTCATCATCAGGCATAGATGGACTGGGAGGTTTGAAGCTCACCTTTGGGATAAGAGTTCCTGGAACAACATACAGAACA AGAAGGGAAGACAAGGTAATTTTTATTTTTTTTCTCAGAAAATTGTGATTAAAAAATTAATTAAGCCACAAATAAATAAA GACAAGGGAGAGAAAATCAAGGAGATCTGTGATGTATTTTTAATTATTATTTAAGCTCTGTGTTCTTTTTTAATGGTGAT TATTATTATTTTTCTGTTCTGACCGTGTTTTATTCCTCACAATCTCTGTCAATGCAACGATCACATTTGATACAACAATT GGGGATGCTCTAGTTTATTTGGGTAAGTTGAAGCCTTTTCTCATGCAATTTGATCCCCACACAATCCTAGTCAGCTTTTC AAATTTCTGAATTATTTTATGGTCAAGAAAGATTCTGATCATGATTTTGTCACCTGGACCCAATTCTCTAATTTTTTTCA ATTTCAATTTTTCTTTTTGTTCATGAAGGGGCATATGACACTGAAGAAGCAGCAGCGCGTACCTATGATCTTGCAGCACT TAAGTATTGGGGCAAAGATGCAACCTTGAATTTCCCGGTACACTAATTTAATTATAATCAATAGTTGCGATTACAAAATT GCAGACAAATGCAGGTTGATGCAACCACAATTAGGATTGATGTGGGTCGCAATTGTGGTTGCAGAGCCCAATTCAAAAGC ATGAATATAATAATAACAATGTTGTTGATTCTGAGTATATTTTTGGGATGAATGGTGCAGATAGAAACGTATTCAAAGGA TGTTGAGGAAATGGACAAGGCGTCAAAAGAGGAATACCTGGCTTCTTTGCGGCGACAAAGCAGTGGTTTTTCTAGAGGCA TTTCTAAGTACCGAGGGGTAGCCAGGTTAGTAGCAATGTAGCATTCAAATCAATGCACATTGTTATGGAAAATTCACATT AACTTACTGATGTAATTAATTAATACTAATCTTACTTAAATTTGAATAGGCATCACCATAATGGACGCTGGGAAGCTAGG ATTGGAAGAGTATGTGGCAACAAGTACCTCTATTTGGGGACATATAGTAAGTTGTCACTTTCATTTATTTCTTCTGCATC ATGATTCTAGATAATTCTTATTCTTATAATTACTGTGAAATTCAGAAGGGAAAATGCAAAGAAAGTTCAATTTCTCTTTT TATAGAACAAAGAAAGCCTGGTAAAGATGTCACGCGGCATGTCCTAATTTTCCGTTTGTGTTCCATGAAGTTTCCTTTTC CACTAGCAAACAAAATTGGTTCAGCTGCCTCATCAAAAAACCACAAATTGCACCCTTTTTTTCACCTTCATTCCACAAAT TTTCACCCTTTTTGATGCTGCTAATCTTCCAATTTAATTTTAAGAACACCAAGTAGTCAACTACTGTTAGTTCACCCGGT AAAGACGAACCACTTCCCTTTAAAAGGCTGTGTTATATTCTTACTGCCGATGTGAGGAATATATTGATGGGCGACCTATG AGTATTCTATTATAATGGCCGGAGCTAAATTCAACCAATTTTTTTTTTTAGAATTATACCCATTCCATTGGAATAATACT CAATGGGCCCCACTTCTTACCTCATATTTTTTCTTACCGTACAAAACTTGTGACTTGCTCTAAATAACAGTTTTTAAAGT AAATGACAGAAATGCACTGTGAGGTTCCTAGATAGCAGCACATGTAACAGCATATTTTACCGCATTACAGCTAGGAAAAC TGCAGTTCTCATAATTAATGTGAATGAATTTGGTTAAAGCTGCTGTGTTAGGATGCATGTGTGAGTTGTGCTCCTTGCAT GAACTGTAGCTGCTGCAGTACTCTTGTCCCTTTGCTGCAGCAGTATACATCAAAATTAGTGTATGAAAGGAAAGTTACAT ACACCTGCAATAAGTAATAAGTATATTTTCTCTGCTTTGTTTTTCTTATATATGAAAAGCTCTTATTAGGAAAATTTAAA AAATGAAATATATTCATGAAAAAGGTATAAAGTTTAATATATTATTAGAGGGTTAAATATGTTGTTGGTCCTTACAGAAT CATGAATTATTGATTTTTATCCCTTGAAAATTTTGCTTGAAATACATCCACAATTTTTAAAAATTCACATGTTTGAGTCT CTGAAAGGAACATTACCCAAAGAAAAAATAATTTTGAAGATCACCTTTTTTAGTAAATTTCACCCCTTGAAACTGTTTTG ATTTCAGAGGACTTAAACATATGTATTTCCTGAAACTCATGATGTGTTTCAACGATTTATTTTTGTGACCTAAATCAATA ATTTTAAATTTGACCAGGACTAAGAACATATTTAACCCATTAATAGATTTTAAAATTATAATTTTTTATAATTAAAACTC TAATTCTTGTAAAAATATTCTGAAATAGTTTTTATTTATTTATAGATGTATTCGCAGATGACTTGATAGAAAAATGTTTA TATGTCATGCTTTCAAGTTAAAAATTGTTGTGTCCTAAATTTAGGGGTCGAAACTCTACCTAATTTTGCTACAGTATTAT TTAGCTATGTATCATGCACAATTTTGTTGGCCAAGTTCAATCTAACATTTGACAAATAGAGCCCTGAACCAAGATAGGCA AGCATGAAGGAGGGTACAGCAGATCCTTGACTTTGTACTTTATGAATGTTGATGCAGAGTTCATGCAGTGTCCACAATCT CCTGCCAACATGTCGGACAAAATAATAATTTAAAAATTCCCAATCTCCAAAGCAGGAAAATGAAAAATTGTTTAGGAATT TTTTATAGTTCCCTGTTAAAAGTTAGATAAAATCAGAAAGTAAACTGGATTAGATCCGTAGAACACCAACAACCTCTACA CCCAAAAACCCAGTGGGCACGTGAATACTAATCCTGGCCTTGATTTTTCAATTTTTTTTTAAACTTTGTGAGATCCTATG TCTTAAAGTTACTTTTTACAAATTTTATTCATTTTTAATGAATTAATTAGTCACCAAACAATTTTGATTTGGAAAATAGT TAGTAATCATCTGCATAGTGCTGATACCTAAATAACATTCAATAAGTGCTATTTTGTTTGCATTCAAACATATTTGTAAG TATCATTTTTTAATTACTAATGTTGAGATAATTATTTTTTTGCTTGTTTTGAACTCTGAAGAAACTCAAGAGGAGGCAGC AGTGGCATATGACATGGCAGCAATAGAGCAAAGAGGACTGAATGCAGTGACCAATTTTGACATAAACAACTACATTGACA AAATAAAGAAGAAAAATGAAGAATGCCAACAAATAGAAGCACAAACTGCAGAAATAGCTCCCAACACCCCTGACTCTGAA GAACCAGAAGCAGAAGTAGTAGAACAGACAATTACAAACACACCCCCACCTGAGAATCTTCACATGCAACCACAGCAGCA CCAAGTTCAATACACTCATATTCCTCCAAGTGAGGAGTTCTCACTAGGCACTGTTATGGACCATGTTCTGGAGCAGGACC TGCCATGGAGCTTCATGCACTCTGGGTTGTTGCCACAGTATCATCATCAAGACCCAGACTTGTATCTGAGCAAAGCAGAG GATTTAATGGGCATGTTTGATGGTGCAGGGTTTGAGGATGACATTGATTTTCTGTTCAGCACAGAGCCTGGTGGTGAGAG TGACATCAACATCAGTGCAGGTTTAGATAGTATTGACTGTGGAGGAGATGGTGCAAATGGGGGTGCAGATGGAAGCATGG TGGATAACAAGCCGCAGAAGCACCTGTTGTCTCTTAATGCTTCACCTTCATCTACAACAACTACAGATTACAGTGTCTTG TAACTATACTCTATGATGTCTTGGGAAGGTGTTGGTTGGGAAATATTGATTAATGTTCTTGAGATTGTTGGGTTTGTTCA GTATATTGTTGGGATCAATTGTCATAGGTGGATGGGTGTTGACATAGGGTGACTTGTGAAATTGTTCATTGGTTTACTTT ACAATCCCTTGTCTTTCATTTTAGACTTTGATTTTAGAAGATCCAGAATAGTTTTTCCCCTTTTTGGGCAAGGAGATTGA GAAAGGGAATGTTCTAAAGAAATAGAACCCTTTGTTTTACAATCAAGTTTCATTTCTCTCTTCGCGTTAAGCAAAAAAAT ATTTCCTCCTTCTAAACAGAACCCTTTTCTGTTTTCCGTCAAGCCGATTGGAAACGAACCAAACAAGCTGATAATGTTCA TGCAGTATACATCTAGGAGAGGGTTCAAAATAAGTTAATTTTGGCATAGATTATTGCATCAGTGGATCATAATATACGGT TTTATTTTGTAAAAAGAAACTTTAAAAGTTATATTATATGTATAATTGGGAAAAAAGTTAATTAGGCTTTATAAGAAAAA AAAATCACAACTTAAACAGACAATGGAGACTCCAACGGGTATGAAACAGTATCAACAAGTATTTCATGAAGTATTTGAAT AACTTTAAAATTTAAATTTATCTCATAACTACATGTGTTGAGTTAGGGCATTGTTGAACACTTTCATCATATAGTAAATC CAGTCAATTATTATCAAGAAAACCTCTAGTGATACTCCAGCATGAACACCAGGTCATCACATCAG
CDS sequence (LotjaGi3g1v0303600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGGTCTCCAGCAACTTCTTCCTCTTGTTCTTCTTCATCTTCCTCTGTTGGGTTTGGAGGTCCCATTCAATCAGA GAAAAGAAGGGCTAATAAGCATCCCAAAAGAAATCTCAATGTACAGAAATGCAAGCAGAATCCAACCACTGGTGGTAGCA GAAGAAGCTCCATTTACAGAGGAGTTACCAGGCATAGATGGACTGGGAGGTTTGAAGCTCACCTTTGGGATAAGAGTTCC TGGAACAACATACAGAACAAGAAGGGAAGACAAGTTTATTTGGGGGCATATGACACTGAAGAAGCAGCAGCGCGTACCTA TGATCTTGCAGCACTTAAGTATTGGGGCAAAGATGCAACCTTGAATTTCCCGATAGAAACGTATTCAAAGGATGTTGAGG AAATGGACAAGGCGTCAAAAGAGGAATACCTGGCTTCTTTGCGGCGACAAAGCAGTGGTTTTTCTAGAGGCATTTCTAAG TACCGAGGGGTAGCCAGGCATCACCATAATGGACGCTGGGAAGCTAGGATTGGAAGAGTATGTGGCAACAAGTACCTCTA TTTGGGGACATATAAAACTCAAGAGGAGGCAGCAGTGGCATATGACATGGCAGCAATAGAGCAAAGAGGACTGAATGCAG TGACCAATTTTGACATAAACAACTACATTGACAAAATAAAGAAGAAAAATGAAGAATGCCAACAAATAGAAGCACAAACT GCAGAAATAGCTCCCAACACCCCTGACTCTGAAGAACCAGAAGCAGAAGTAGTAGAACAGACAATTACAAACACACCCCC ACCTGAGAATCTTCACATGCAACCACAGCAGCACCAAGTTCAATACACTCATATTCCTCCAAGTGAGGAGTTCTCACTAG GCACTGTTATGGACCATGTTCTGGAGCAGGACCTGCCATGGAGCTTCATGCACTCTGGGTTGTTGCCACAGTATCATCAT CAAGACCCAGACTTGTATCTGAGCAAAGCAGAGGATTTAATGGGCATGTTTGATGGTGCAGGGTTTGAGGATGACATTGA TTTTCTGTTCAGCACAGAGCCTGGTGGTGAGAGTGACATCAACATCAGTGCAGGTTTAGATAGTATTGACTGTGGAGGAG ATGGTGCAAATGGGGGTGCAGATGGAAGCATGGTGGATAACAAGCCGCAGAAGCACCTGTTGTCTCTTAATGCTTCACCT TCATCTACAACAACTACAGATTACAGTGTCTTGTAA
Protein sequence (LotjaGi3g1v0303600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRSPATSSSCSSSSSSVGFGGPIQSEKRRANKHPKRNLNVQKCKQNPTTGGSRRSSIYRGVTRHRWTGRFEAHLWDKSS WNNIQNKKGRQVYLGAYDTEEAAARTYDLAALKYWGKDATLNFPIETYSKDVEEMDKASKEEYLASLRRQSSGFSRGISK YRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDMAAIEQRGLNAVTNFDINNYIDKIKKKNEECQQIEAQT AEIAPNTPDSEEPEAEVVEQTITNTPPPENLHMQPQQHQVQYTHIPPSEEFSLGTVMDHVLEQDLPWSFMHSGLLPQYHH QDPDLYLSKAEDLMGMFDGAGFEDDIDFLFSTEPGGESDINISAGLDSIDCGGDGANGGADGSMVDNKPQKHLLSLNASP SSTTTTDYSVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 11 | 11 | - | – | |
| MobiDBLite | 1 | 22 | 22 | - | – | |
| MobiDBLite | 1 | 57 | 57 | - | – | |
| PANTHER | 18 | 280 | 263 | 1.8E-122 | – | |
| PANTHER | 18 | 280 | 263 | 1.8E-122 | – | |
| MobiDBLite | 41 | 57 | 17 | - | – | |
| SUPERFAMILY | 57 | 126 | 70 | 4.71E-17 | ||
| CDD | 57 | 125 | 69 | 2.2374E-23 | ||
| Gene3D | 58 | 126 | 69 | 1.8E-21 | ||
| SMART | 58 | 130 | 73 | 3.7E-27 | ||
| Pfam | 58 | 116 | 59 | 3.7E-12 | ||
| ProSiteProfiles | 58 | 124 | 67 | 20.956 | ||
| PRINTS | 59 | 70 | 12 | 2.0E-5 | ||
| PRINTS | 106 | 126 | 21 | 2.0E-5 | ||
| SUPERFAMILY | 159 | 220 | 62 | 5.3E-17 | ||
| Pfam | 159 | 210 | 52 | 3.6E-10 | ||
| CDD | 159 | 220 | 62 | 5.81915E-24 | ||
| Gene3D | 159 | 220 | 62 | 9.5E-19 | ||
| ProSiteProfiles | 160 | 218 | 59 | 17.464 | ||
| SMART | 160 | 224 | 65 | 5.2E-25 | ||
| Coils | 219 | 239 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0303600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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