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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0305600 |
| Transcript ID | LotjaGi3g1v0305600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT4G14096.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q94B46|FBL74_ARATH F-box/LRR-repeat protein At4g14096; TrEMBL-Plants: tr|G7KDV1|G7KDV1_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi3g1v0305600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:64296782..64298903) extracted from Lotus japonicus Gifu genome v1.2.
GACTTGAGATGAATGAATGATCATTCAAACTGGGGTTTGGTTATATTTCATGCTATGATTGTTCGTCTCTATTCACACCT TGTTGGTTTATAATTATTATCATTCTGCAATAATTTCTCTATGTTTTTTGCTGGTTTAGGATTGGGTGGGGGCTGAAGTG ATGTTATATCTACTGTTATGGTGCCCCCTATCTTCTTCAATTTCTTGTATTTTTGTTCATGGGTTGAAGCACCCCTTGTG CTTCCTTTAATTTATCTTCTTTGGCTTTTTCAAAAAAAAAATATTTATTTCCCTCTTTTTGGTTGGCACAGCAGGGGTTA TGGCTGGTTTAATCTCACCACCTGATGTACATAAGCTCCAAAGAAATAACGTGGGCGACATGAAAGATATGATCAGCATC TTACCTGATTGTATTCTTCATCTTATTCTTTCTTTACTGCCTACCAAAGAGGCTATTCGAACTTCCATTTTGGCTAAAAG GTGGAAGTACTTGTGGACCTTCTTATCTTCCTTTGATTTTAGAAGTTATTTGTTTAGGCCCAGCATGAAGGAAGACCGAA AACAGAAATCTGCATGTTACCTTCTAGATCAAGTGAACAGACTACTTTATCATTCTAATTGTGTAAAAAAGCTATGTGTC ACAGCTTCTGGAGTTTCCATTGATGTGGATAGAGTCAATTCTCTTATATCTTCTGCAGTGAAGCACAAAATCGAAGTGCT TAAGCTTTTGGTACATGTAAAGCCTTTGTTTGTGTTACCTAACTTCTGCTCAGCTTCTGATACATTGAATAAGCTGGTTT TAGAACCTCACTGTGTTCTAGATGTTGCTAGTGGAATTTATTTCCCTAGCCTGAAGACATTAAAGCTCTCACGTGTTACC TTTGCAAATGAGAAGTCAGTTCAACAGCTTTTCTCTGGGTGCCCTGTCCTACAAAAGTTAAGCTTGTGTAATTGTAATTG GTGTAACATCAAGCAGATCAGCATTACAACTCCTACATTAAAGATATTAACCATCTTTTCGGGCCTCAGCGTTTATATGA ATTCTACAGTCAAGATTGATGCTGGAAATCTTTTATATTTCAGTTACACAGGCTATTCAATGGTAGATTTTGTCCTTGTT AACCTGGCCTCCATAGTTGATGCACGTGTTGATTGTTTCTATCCATTATTTGGACATACTATTGGTACCCCTGTACCTAA ACTATTGGGTGGACTTGGTAGCATCAAATCTCTTAAACTATCAAATGATACTCTTCAGGCATGTTTAACTGCTTCCTGAT CATCTTCATTTTTTTAACTGTATGACAGCTATTGATCATGTTTGCCAATATCTATATGAACGTATTATATTTACTTCATA TTCTAAGTACGCTTCAGGCCAACAGAGTTGGTTTAACAATAAATGTACTTTTCTTTCTTTTACTAGTGTCTTTTGCTTGC AAAATATGCGCTCCATCTCCTTCCCATGTTCAACAATTTGACACGTGGATTTGGGAGCTTCCGAGTTCACTAGTGAAGCA CTAATGAACATTCTCCAAAAGACACCTAAATTGGAAGTTCTTCATATTCCTCTGGTACATCTTTTATCCTGCTTCAATAC TTGCATCTTCCATGTTTCAAGGCTAACAGTAGTATTGTTACTGTCCATTGACTTGTTTAACCCACAGATCTGCTTGGATG CTCAAGACTGGATACTGAACTCAGTACCTTGCTGTTTCAAATATAGTCTCAAACTATTTTCTATTTCACATTTTCGTGGG CGTGTAGCTGAAATCCAGTTGCTGAAGTTTTTGTTAGAAAATGCCGCAGTTTTAGGGGAGATCCGGATATTCTGTTCGAA AACTTTATCTGTTAATTTGAAGAAGCAGGCTGAGGTGAGCAATCAATTGCAACCTGTATGCCCAGGAAGTTGTGTCATCA AGTTTCAGTAAATCTTCTTTCTTTCTTTTACTTTTTGCAAAAAGGGATTCATTTATGTATGATGTTACTTCATTCTAAAG CTTGAATTGTTGTTAGCTGAATTCGATTTACATGGTTAGACTAACAAGAGTGGTTTATGGGACATTCACTTTACGAAATG ATTTTAACATTGGAAATAAACATAATATTGGATATAATTGAC
CDS sequence (LotjaGi3g1v0305600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGTTTAATCTCACCACCTGATGTACATAAGCTCCAAAGAAATAACGTGGGCGACATGAAAGATATGATCAGCAT CTTACCTGATTGTATTCTTCATCTTATTCTTTCTTTACTGCCTACCAAAGAGGCTATTCGAACTTCCATTTTGGCTAAAA GGTGGAAGTACTTGTGGACCTTCTTATCTTCCTTTGATTTTAGAAGTTATTTGTTTAGGCCCAGCATGAAGGAAGACCGA AAACAGAAATCTGCATGTTACCTTCTAGATCAAGTGAACAGACTACTTTATCATTCTAATTGTGTAAAAAAGCTATGTGT CACAGCTTCTGGAGTTTCCATTGATGTGGATAGAGTCAATTCTCTTATATCTTCTGCAGTGAAGCACAAAATCGAAGTGC TTAAGCTTTTGGTACATGTAAAGCCTTTGTTTGTGTTACCTAACTTCTGCTCAGCTTCTGATACATTGAATAAGCTGGTT TTAGAACCTCACTGTGTTCTAGATGTTGCTAGTGGAATTTATTTCCCTAGCCTGAAGACATTAAAGCTCTCACGTGTTAC CTTTGCAAATGAGAAGTCAGTTCAACAGCTTTTCTCTGGGTGCCCTGTCCTACAAAAGTTAAGCTTGTGTAATTGTAATT GGTGTAACATCAAGCAGATCAGCATTACAACTCCTACATTAAAGATATTAACCATCTTTTCGGGCCTCAGCGTTTATATG AATTCTACAGTCAAGATTGATGCTGGAAATCTTTTATATTTCAGTTACACAGGCTATTCAATGGTAGATTTTGTCCTTGT TAACCTGGCCTCCATAGTTGATGCACGTGTTGATTGTTTCTATCCATTATTTGGACATACTATTGGTACCCCTGTACCTA AACTATTGGGTGGACTTGGTAGCATCAAATCTCTTAAACTATCAAATGATACTCTTCAGGCATGTTTAACTGCTTCCTGA
Protein sequence (LotjaGi3g1v0305600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGLISPPDVHKLQRNNVGDMKDMISILPDCILHLILSLLPTKEAIRTSILAKRWKYLWTFLSSFDFRSYLFRPSMKEDR KQKSACYLLDQVNRLLYHSNCVKKLCVTASGVSIDVDRVNSLISSAVKHKIEVLKLLVHVKPLFVLPNFCSASDTLNKLV LEPHCVLDVASGIYFPSLKTLKLSRVTFANEKSVQQLFSGCPVLQKLSLCNCNWCNIKQISITTPTLKILTIFSGLSVYM NSTVKIDAGNLLYFSYTGYSMVDFVLVNLASIVDARVDCFYPLFGHTIGTPVPKLLGGLGSIKSLKLSNDTLQACLTAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 276 | 263 | 5.9E-45 | – | |
| PANTHER | 14 | 276 | 263 | 5.9E-45 | – | |
| SUPERFAMILY | 23 | 100 | 78 | 5.63E-10 | ||
| Pfam | 25 | 63 | 39 | 2.4E-4 | ||
| SUPERFAMILY | 146 | 309 | 164 | 1.02E-5 | – | |
| Pfam | 177 | 202 | 26 | 4.9E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0305600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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