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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0316300 |
| Transcript ID | LotjaGi3g1v0316300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease H; TAIR: AT3G25270.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A061FPX3|A0A061FPX3_THECC Uncharacterized protein; Found in the gene: LotjaGi3g1v0316300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:67013146..67016885) extracted from Lotus japonicus Gifu genome v1.2.
GGAGAAGATAAGGGAATGGCGTAGGGGAAAGGGTTTGGGGTGTTCAAAAAAGTAAGGAGCTAGAGGAGAGGGTAAGTGGG GTAGTAAGGCGTATGGAGGAAGAGGGAATATCAGAGGTGCTAAGGCGTGAGAGACTAGTGTTAATGGGGGACTGTGGAAA GAATATCGTGCGGAAGAGAGATATCACACAACTTCAGTTTGAGGGTCAAGTGCTGGAAGAACCTAGTTAGATAAAAGATG TTGTCATAAATCATTTTAAGAGCTTTTTTGCTCATGTTGCTTCTAAAAGGCCGAGGCTGAAGTGTATGGGCTTGAATAAA GTGTCTCTTGCTGAGAATCTTTTGCTAGAGGCAGATTTTACAGCGTCTGAGATCCTTGATGCAATAAAAGAGTGTGATGG CAACAAGGTGCCGGGGCCGGATGACTTTAACATGGCTTTTTTTCATACAGTTCTGGCCGGTGATAAAAGAGGATGTGGAG CGATTTTTTAAAGATTTCCCTGGCTCAGAGAAGCTGGTTAAGGGATTGAATTCAGCCTTCATAGCACTTATAGCGAAAAG AAATCACCAAAGCTCTCTTTCTGATTTCAGACCGATTAGCCTGATTGAGGGTGTGTATAAACTGCTGTCAAAAGTGCTTG CAAACAAGTTAAGTGGGGTTCTGCCCGCCTTGTTGATTCCTAATCAATTCGCCTAAAGGTAGGCAAATTTTGGATTGTTG CTTCATAGAAAATGAAGTGTCTAAAAAGAAGGGAATCAGGAGGTATTATGATGAAGCTGGCCTATGATAATGTGGAGTGA GACTTTTTACTAGACATGCTGAAGGATATGGGGTTTGGGGAGAGGTGGCGTAATTGGATTCATAGCTGCATCTCAACAAC GATGCAGGAAATTTTGGTAAATAGGTCACCAACGGAGTTCTTTGCTATAAAGAAGGGGCTGCGCCAGGGTGGTCCTTTAT CCCCTCTTTTATTTAACATTTGTGTGAATGGAATGTCCTGCATGTTGAATCAGATGGTGGAGGGGCCTAGGCCGTGTGAG GTATTGTTCGGGGAAGTATTGAGGGTAAATCACCTTCTTTTTGCAGATGATGCGATGTTGTTCTGCGAAGGAGATTTAAA TCAGATTAGATGTCTAGCCTTCGCTGTGGAGGCATTCCTCTTTGTGTCTGGTTTGAAGTTGAATTTTCATAAGTCAGTAG TTATTGGTGTAATGTTGACGAAGAAATTGAGGATCAAGCGGCAAGGATTCTGAATTTTAATAAGGAAAAACTGCCAATTG TTTGCTTGGGCCTTCCTTTGGGGGGAAGTCCGAGGAGGATTGTGTTTTGGAAATCGGTGCTGGATAAGATGGTGTTGAAA TTAGGATGTTGGAATTCAAGGTTCTGGTCCTTAAGTGGGAGGATAGTTCTCTTAAAATCAGTAGTAAGTGCAATTCCTTT GTATTATATTGTCTGTTTATAAGGCGCCAAAAGGGGTGATAAAGGAGATGGAAAGGATTATGTGTCGATTCCTTTGGGGT GGTGTGGTGGGTTCGCGTAAGATAGCGTGGGTAGGGTGGGAGGATCTGTGTAAGGGGGTTCGTTTTGGGGGTATGGGGTT GGGTTTTTTGTAAAGTAAAAATCATGTGTTGCTTTTAAAATGGTTTTGGAGGTTTGAGACAGAAAAAAATGCTCTATGGA GGAGGGTTGTGTGTGGGAGATATGGCTTGGAGGAACAATTCATTATGCCACAAGTAGAGCAGGTTAGAGCGTCTCTTGGG TCTTGTGTGGTAAGGGACTTGCTGGTTCTGTGGGGAAGTCAAGCGGTTGCGGTCTTAGAGTTTAAACAGGGGTTGGCTTG CAAAGTGGGGGAAGGTGATGGGGTGAGGTTCTGGTCTGATCCTTGGCTAGGGGAAAGGTCTTTATAGTTTAGATATCCTC AGTTTTTGCTTTGGCGGTAAATAAAAGGGGTGTTGTTAATGAGTTTGGAATGAAGGAAGGAGGTGTCTGGGTGTGGAATA TACAGTTTCGGAGGAATTTCTTTGACTGGGAATTGGATCAGTATGAAAGTTTTCTGGAAAACCTTCAATCAGTAGTGATG AATGATGCAGTGGACATTGTGTATTGGAAAGGAGATACATTGGGTGAGTTTTCAGTCAGAGGCATGTGCTGTAATTTGGA GGATCACAGCGCTTTTGTGAGGCAAGATGGGTGGTGCCCAATCAACTGAAGAAGATGCTTCCAGCTAAAGTCGCTATGTT CATGTGGCAACTACAAAAGGGGAGGGTGGCTACAAAAGCATGTCTTATGACCCGTTGTATTGTGTTACCATACGAGGGCA TATGTTGTTTCTGTTTATCAAGTATTGAGACAACTGCACATCTGTTTCTTCATTGTGGGTATGTGTGGCCTTTGTGGTGT TCAATCGTGAGGGGTGAGGACATTATGTGGGTTATGCCGGAGAATGTGAGCATGCTTTTGTCAGAATGGGGTGTTGTTAG GAGCAAAACTGATCACGTTCTTTGGGATTTAATCCCTTTTGCACTATGTTGGACTATTTGGCTCGACGGGAATGACACTG TTTTCAGTAACAAGGCTTTTTATTTCGAATCGACATGGGATATGCATTTGGCTAGAGTGGCATGGTGGGTGAAAGCAGGT TGGGAAAAATGTCCTTATTCAGTGGATCAGATTGCTAGGGGCCTGCAACATGTTGAGGTACCAAAACCACAGAAAACAAG GGTGGAGCAAGAGTGGTTACCACCAGATGAGCATGAATTGAAATTTAATGTTGATGGTTCCTCCTTGGGCTGCCCAGGTA AAAGTGGGGTTGGGGGAGTGCTGAGAAATCACAACAAGGTGGTGCTTGGTTACTTTGCTAAAGGAATGGGTGATTTGTAT GTGTATGAGGCTGAAATTCAAGCTATTTACCATGCTTTGCTGTTCTGTCAGGAGTTTAATTTCAGGAAGATAATTATTGA AAGCGACTCCTCTGTGGTGGTAGGGTGGGTTCTAAATAAGGAGAAGAGGCCTTGGAGGATGTTTCAGGCGCTGAACATAA TCGATAACTTGATCCCGGTGGTTCAGTGTTAGAGTGTTAAACATAATTTAATTAAGGGAGGGGAATATTGTGGCTGACTT TCTAGCTAAGTATGGCAGGGATAGCAGAGGAGAAATTTGGAAGGTGTGTGCTTAGTATAGTGGAGGATCTTCTATACCAG AGTATGCAGCCATATTGCTTGCGGTTTTGTCTGAGGACTGTTGTTTTGCTCTGATTGTGTCATTTTTGGTGAGTTGATAT GTGGCTTATAAAGTTAGATGGAGAAAATGCTTCTAAAGGGAGGATTTAATGAGGATGCAGATGATTCTTTGTTGTACAGG ATACCATGAAGGTGGGCTTTATATGTAGTTTTGGGGAAAACATTAAAATGAGGAGTGGTTTTGGTATAAAGTGTGCTGCA TTGATAAATGGAAACTTATCAGTTCGTTTATGTTGTGGTGAGCTTGATGGTGTAATATCTTGGAGATCAACTGAATGGCA GTAGTGCAAGTATACTGGTTTGGCTATCCAATTTTAGGGTTTATTTTGGTTCAGTGTTTTTTTGGTGGGGGAAATGGGGT TGTTTCTTATTGTCAGGATATTTTTTTCAAGTCACTCTTAGGGAAAACTATCCTTAAGTTTGGCTTCATGGGGAAGTTTA ATTGTTTGCCTATGGCATCTGGATTTGTATTGGCTTTTGCTCCTATATTTTCATGAGAGG
CDS sequence (LotjaGi3g1v0316300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCCAGCTAAAGTCGCTATGTTCATGTGGCAACTACAAAAGGGGAGGGTGGCTACAAAAGCATGTCTTATGACCCG TTGTATTGTGTTACCATACGAGGGCATATGTTGTTTCTGTTTATCAAGTATTGAGACAACTGCACATCTGTTTCTTCATT GTGGGTATGTGTGGCCTTTGTGGTGTTCAATCGTGAGGGGTGAGGACATTATGTGGGTTATGCCGGAGAATGTGAGCATG CTTTTGTCAGAATGGGGTGTTGTTAGGAGCAAAACTGATCACGTTCTTTGGGATTTAATCCCTTTTGCACTATGTTGGAC TATTTGGCTCGACGGGAATGACACTGTTTTCAGTAACAAGGCTTTTTATTTCGAATCGACATGGGATATGCATTTGGCTA GAGTGGCATGGTGGGTGAAAGCAGGTTGGGAAAAATGTCCTTATTCAGTGGATCAGATTGCTAGGGGCCTGCAACATGTT GAGGTACCAAAACCACAGAAAACAAGGGTGGAGCAAGAGTGGTTACCACCAGATGAGCATGAATTGAAATTTAATGTTGA TGGTTCCTCCTTGGGCTGCCCAGGTAAAAGTGGGGTTGGGGGAGTGCTGAGAAATCACAACAAGGTGGTGCTTGGTTACT TTGCTAAAGGAATGGGTGATTTGTATGTGTATGAGGCTGAAATTCAAGCTATTTACCATGCTTTGCTGTTCTGTCAGGAG TTTAATTTCAGGAAGATAATTATTGAAAGCGACTCCTCTGTGGTGGTAGGGTGGGTTCTAAATAAGGAGAAGAGGCCTTG GAGGATGTTTCAGGCGCTGAACATAATCGATAACTTGATCCCGGTGGTTCAGTGTTAG
Protein sequence (LotjaGi3g1v0316300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPAKVAMFMWQLQKGRVATKACLMTRCIVLPYEGICCFCLSSIETTAHLFLHCGYVWPLWCSIVRGEDIMWVMPENVSM LLSEWGVVRSKTDHVLWDLIPFALCWTIWLDGNDTVFSNKAFYFESTWDMHLARVAWWVKAGWEKCPYSVDQIARGLQHV EVPKPQKTRVEQEWLPPDEHELKFNVDGSSLGCPGKSGVGGVLRNHNKVVLGYFAKGMGDLYVYEAEIQAIYHALLFCQE FNFRKIIIESDSSVVVGWVLNKEKRPWRMFQALNIIDNLIPVVQC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 2 | 61 | 60 | 1.8E-8 | ||
| PANTHER | 3 | 279 | 277 | 3.0E-32 | – | |
| ProSiteProfiles | 178 | 285 | 108 | 9.725 | ||
| Gene3D | 180 | 284 | 105 | 1.2E-15 | ||
| SUPERFAMILY | 182 | 270 | 89 | 1.77E-15 | ||
| CDD | 185 | 279 | 95 | 4.28841E-24 | – | |
| Pfam | 185 | 278 | 94 | 1.4E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi3g1v0316300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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