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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0320800 |
| Transcript ID | LotjaGi3g1v0320800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain protein; TAIR: AT4G27410.2 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein; Swiss-Prot: sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72; TrEMBL-Plants: tr|A0A1C6ZY99|A0A1C6ZY99_9FABA NAC3; Found in the gene: LotjaGi3g1v0320800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:68137475..68139157) extracted from Lotus japonicus Gifu genome v1.2.
CAGAGAAAAAAACGAAACAAGAGAAATCTATAACAACAGCAAAACAAAAACGCTCCTCTTTTGAACTCTTCTTAATTCTT ATCCTTCAATTCTTCCTCATCATCGTGAAATCTCAGCAGAATGGGAGTTCCAGAAAAAGACCCTCTTGCTCAATTGAGCT TACCTCCTGGTTTCAGATTCTTCCCCACTGATGAGGAGCTTCTGGTTCAGTATCTCTGCCGTAAGGTTGCTGGCTATCAT TTTTCTCTGCCAATCATTGCTGAAATTGACCTGTACAAGTTCGACCCTTGGGTTCTACCAGGTGATTATCCATCATCCAT ATTTTTCAATTTTGAACATTATTTTTGCTTTTAGTTCAAACAAGTGTAACTTAATTCGGTTATGGTTATGGTACAGGCAA GGCGATTTTCGGTGAGAAAGAGTGGTATTTTTTCAGCCCCAGGGACAGGAAGTACCCAAACGGTTCTCGACCTAACAGAG TTGCTGGCTCTGGGTATTGGAAAGCCACCGGAACTGACAAAGTCATTACCACTGAAGGTAGAAAAGTTGGAATAAAAAAA GCACTCGTTTTCTACATTGGCAAAGCACCAAAAGGCACCAAAACTAACTGGATCATGCACGAGTATCGCCTTCTCGACTC TTCGCGGAAACACAAACTTGGCAGCTCCAGGGTACGCAGCGCACACACCCAATTTACAATTTTCATTCGATATTCCTTCC TCAATATTTAGTAAAATAATATTTATTTTTGTATTCTTTGCAGCTAGATGAGTGGGTTTTGTGTCGCATATACAAGAAGA AATCGAGCACGCAGAAGGAAGCGGCAGCAACATTTTCGAGCAAAGAATGCAGCTATGGATCTTCATCGCCGTCCACGTCG TCTCACGTGGAGGACATGCTGGAGTCGTTGCCGGAAATCGATGACCGGTGCTTTGCGCTGCCGCGCGTGAACTCGCTCCG GACGCTGCAGCAGGACGAGAAGTTGGGTTCTGCCACCGGGATTTTCACGGACTGGGGTAACCCGACGGATCTGGACACAG TGCCCGAGTTTGTTCCGGGGAGCCAGGCTCAGTGGATGGGGAATTACAGTTGCAATGACCTTTATGTCCCTTCTGTGCCG CAGTTCGGCCACGTGGACTGGTCCGCAACAACTAGGAACACGGCGGAGGAAGAGGTTCAGAGCGGTGTGAGGACCCATCG GGTTGCTGAGAGTTCCGGGTTTTATCAGCAGAATCCGGATTTGACCACGCAGCGATTATTGCCCGGTTCTGTTGACCCGT TTGGGTTCGGGTATTTGGGTCAGCAAACTGGGTTCGGTTTCAGGGACTGAAATGAATTAGTTATTGGTAGCTTAGGTTTG GACAGTGGGTTGAACAAAAAAAAAAAGGATTGGATGATAGTAGGATGTAGATCTTCTCAAGTTGAACTTCCACATTAAGA CAAAAAAATAGTTGATCTTTCAATTAATATTGTACTTAAATTTTTGTTTTTGTCAATTGTCTCTATTAATCGTATATAAT AAGTTAAATTCTACAAATATGGAGTTGAGAGTTCGGTTGTTGCTCGAAAGAATTGAACACATTGTGATTAACCATTTACC ACTTTGAAATTGTTTTTACTATGATATAATTAATCAAGAAAACAATCCATGTGTGAGTAGTTTTTTCCTAATCCTCCAAT CAA
CDS sequence (LotjaGi3g1v0320800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGTTCCAGAAAAAGACCCTCTTGCTCAATTGAGCTTACCTCCTGGTTTCAGATTCTTCCCCACTGATGAGGAGCT TCTGGTTCAGTATCTCTGCCGTAAGGTTGCTGGCTATCATTTTTCTCTGCCAATCATTGCTGAAATTGACCTGTACAAGT TCGACCCTTGGGTTCTACCAGGCAAGGCGATTTTCGGTGAGAAAGAGTGGTATTTTTTCAGCCCCAGGGACAGGAAGTAC CCAAACGGTTCTCGACCTAACAGAGTTGCTGGCTCTGGGTATTGGAAAGCCACCGGAACTGACAAAGTCATTACCACTGA AGGTAGAAAAGTTGGAATAAAAAAAGCACTCGTTTTCTACATTGGCAAAGCACCAAAAGGCACCAAAACTAACTGGATCA TGCACGAGTATCGCCTTCTCGACTCTTCGCGGAAACACAAACTTGGCAGCTCCAGGCTAGATGAGTGGGTTTTGTGTCGC ATATACAAGAAGAAATCGAGCACGCAGAAGGAAGCGGCAGCAACATTTTCGAGCAAAGAATGCAGCTATGGATCTTCATC GCCGTCCACGTCGTCTCACGTGGAGGACATGCTGGAGTCGTTGCCGGAAATCGATGACCGGTGCTTTGCGCTGCCGCGCG TGAACTCGCTCCGGACGCTGCAGCAGGACGAGAAGTTGGGTTCTGCCACCGGGATTTTCACGGACTGGGGTAACCCGACG GATCTGGACACAGTGCCCGAGTTTGTTCCGGGGAGCCAGGCTCAGTGGATGGGGAATTACAGTTGCAATGACCTTTATGT CCCTTCTGTGCCGCAGTTCGGCCACGTGGACTGGTCCGCAACAACTAGGAACACGGCGGAGGAAGAGGTTCAGAGCGGTG TGAGGACCCATCGGGTTGCTGAGAGTTCCGGGTTTTATCAGCAGAATCCGGATTTGACCACGCAGCGATTATTGCCCGGT TCTGTTGACCCGTTTGGGTTCGGGTATTTGGGTCAGCAAACTGGGTTCGGTTTCAGGGACTGA
Protein sequence (LotjaGi3g1v0320800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVPEKDPLAQLSLPPGFRFFPTDEELLVQYLCRKVAGYHFSLPIIAEIDLYKFDPWVLPGKAIFGEKEWYFFSPRDRKY PNGSRPNRVAGSGYWKATGTDKVITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLDSSRKHKLGSSRLDEWVLCR IYKKKSSTQKEAAATFSSKECSYGSSSPSTSSHVEDMLESLPEIDDRCFALPRVNSLRTLQQDEKLGSATGIFTDWGNPT DLDTVPEFVPGSQAQWMGNYSCNDLYVPSVPQFGHVDWSATTRNTAEEEVQSGVRTHRVAESSGFYQQNPDLTTQRLLPG SVDPFGFGYLGQQTGFGFRD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 330 | 328 | 7.9E-172 | – | |
| PANTHER | 3 | 330 | 328 | 7.9E-172 | – | |
| SUPERFAMILY | 10 | 164 | 155 | 7.59E-65 | ||
| ProSiteProfiles | 14 | 164 | 151 | 59.801 | ||
| Pfam | 15 | 139 | 125 | 9.0E-36 | ||
| Gene3D | 23 | 170 | 148 | 1.5E-65 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0320800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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