Transcript — View — Lotus Base

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LotjaGi3g1v0341500.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0341500
Transcript ID	LotjaGi3g1v0341500.1
Lotus japonicus genome version	Gifu v1.2
Description	Plastid lipid-associated protein; TAIR: AT2G46910.1 Plastid-lipid associated protein PAP / fibrillin family protein; Swiss-Prot: sp\|Q8W4F1\|PAP10_ARATH Probable plastid-lipid-associated protein 10, chloroplastic; TrEMBL-Plants: tr\|I3STB5\|I3STB5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0341500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:71633702..71637939) extracted from Lotus japonicus Gifu genome v1.2.

ATGGACTTAGCTTTCCGTTGCAGTTCACCCTTGTACCTTCCATCATCACCATCTACTACTACTAGGAAGCCCAGTAATTG CCATGTGAAATCATTCCCCAGAAAAATGTCACTGTCCATGGCAACTGCTCAGGTTCCTCTTCTTCTGATTCTGCTATTTC TTTCCAATTCATTCTATCTAGGTTTAATTTAACCCGTTTTCATTTGGGTTAATTTGAAGGCATATGATTCCGAGTTAGAG AACAAGAAGCTTCAGCTATTGACCTCTATCCAAGACACACAAAGGGGACTCCTCACAACTCCTGATCAACGCTTTTCGAT CGAAGAGGCTCTCGTACGCACTGCTCTTGCTTATTGTTGTCTTTGTTCACTCCATCGCGCTTTATTTTATTTTATTTTAT TTTATTTTATTTTATTTTATTTTATCTTAATGCATGCATATATGGGGATCGTTGTGGTTGTGGCAGGTGAATGTAGAGGG TTGCAACAAGGGTGACCCCATCAATTTGAACAAGTTGGATGGAACGTGGCGCCTGCAATATACTTCTGCTTCTGATGTTC TTGTTCTTTTCGAAGCTGCTGCTAGACTTCCTTTCTTTCAAGTACCAATCATGAATTTTACTTACCTGCATTCACTTAAT AGCTAAATCCTTTTTAATACAATCTCTAATCATTTTGCCTTTTTTAGTCACATCTTGGCCAATTTGTTCTGTTTGATTTT TTTAGTTATGTAAAAAGTGTTGGCATTGGCCATTTTATAGACTGGGCTTAGAATTCTTAGACATTGCTTTCTCATTGAAT TTTCTAGATCATTTTTATGAGTACCTTGCTTCCACAGGAGTCTTCTCATTAACATGATTGCTGCAAGTTAGGTGCTACAC TTGTTGTTCACAATTATTGTTATATCTGCAAAATCCTTTCATGTAGGTCTTTGGGTAAAAAAAATATTCTTGTTCTATGA TATGGTTATTGTTATTGCTGTTCTTTTGTTATTATTATCATTATTGTTCTGTTGTTCTCTTACCATTTTATTACTTCATT TCTTTCCGTGTCAAGATAGGTTGGACAGATCTTTCAGAAATTTGAATGTCGTGATGAATCTAATGGAGGTGTTATCCGCA ATGTTGTCCGTTGGAGTGTTCCAAATTTGTTAGAGGTAAAATAGCACCTTCCTTTACTTTTTCCTTTCCAACATAGGAGG ATGCAATTAAGTTCTTAGCTCTTAGTTCTTACTCATGAAAGTCCCTAGAGTTCAGACTCTGAATTATGACTTTTGATTTC CCTACCTCGCTGCGAGTCCATGATTTATTCCCCTTCAATTCCACAAAATATTGTAAAGATACTAACTACACCTAAATTGA TTCTTGAATATGCTCTCATAGAATTCAAGGTGGCAAAACAATTTGTCATTTGTGTTCCTGTAATCCTGTTTACTAGTGAT AATTTCTTTTTATATAATTGAAAGATTTATGCCCATTTGTTTTCTCTTTTTAGGTTTTGAGAATTTAAGAATGAAAACTA GTTCAGTTTTATAATTTCATTTTTTTTGTGGTTTCAGTTTTAAAAAGTTGTTGCCAGCTTTAGAAATTCACGAGCACTAC CATCGCATCAGGGACAATTTATCTCTCTGCTACCACTGCATGACACCCTCCATCATCTCCTCACCCACCCACAATTTTCA CCGCATTTCGATACCCTCCACATGTCCACCGCAGCTAAACACCTACCGTTACCGTTACCATCAGCACCACCACCACCGCC ACCTAACACCCTCCATTGTGGAAGGCCTTGAGCCTACGATGACGGTGGAGGGTGCACAATGGTGGAAAGTGCAGAGTGGC GATAATGCTCGACGTTGGATGGCAACAATGATGGAAGGTATGTGAGTGGTAGTGGAGGTGGGGGTGGAAGGCAATAGCAT GGTGGTGGTGGTGGAGGGTGTCACGTGGCAGGATTGGGGGGGGGGGGGGGGTTGGGCCTTGAGGTGATTATGGAGAGAAT ATGGAGCAATGGTGTTGAGTAGTAGTGGCGGGGGTGGAGGATGTTAGGCGATAACGGTGGTGGAGGCTGCTAGTGGTGGC AGTGGATGTGGACGGTAACAGGAAGTAGTAGTGGTGGAGGGTGTCGTCGTATCGAGCGATGGTGGCAATGGAGGGTTCAA AGAAATGGCAGCACTGGTGGAGGGTGTCGGTGGCGGCTCTGATGGATGATGTTAGGTGGTGGAGGGTATCTATAGTGGTG GTGAAGGATGCCAGGCTGTTGAATGGTGAGGCAGTGTTGATGGTGAAGGGTGATGGGCAGCGGCGGTGGTGGTAGAGGGT GTCGAGTTACAGTGTTGGTGTTGGAGTACGGCGAGTGGCTGTGGTGCAGCCGAGTGACGGTGGCGATGAATAATGGGTGT GAAGAGATACAAGAAACCAGTGGGGATGAAGGTGTGCCACATTCTCAAAATTAAAAACCATAATCACAACTTTTTTTGTG GTTTTATAAACTAGGTTTGAAATCATTTTGAAATTATGTTAAAAATCATTTCAACTCATTTTCACTGAACATATTTCATT TTGAAACATGTATTTGAAAACAAAAAATTGAATACTCGCAAGTCGCAACAACCCTGAACGAGTAATTACTTACTAATCCA AGAATATGTGTTGCATCGGATTTGTTTTCTGGCTTTTGGTGGGGGCTATGGCCTTATGGGCATACTTCATCCCAGGGGGA AAAGCAAAATGAAAAATTGATAAAGAACATTTTAGCTTTTTCCCTTTATTTTTGCTGTCAATATCCTTGACTAGGACATC TGATTGAACGGTTTAATGTTTATTGCAGTAGACACATTTGGTGATTTTTTTTTGGGGTTGCACATTGGATGGATTCAAGA CTATGGTTTGCATGCTAATTTAGAATTTCAAACTTTTTGTTTTAAAGAGTGTGTTCATAGTGTGGGAAACAGAGATAATC TTATTAGTCAAAACTTGGTTCCTTTGTAACCTAAACTTAGATTGTTGGAAAACAAGATTGGATAAAATACTTATGCTTGA GCTTTGGGCTCTCTCATGGTAACCAAATATTGAAAAAAAAAATCTTGGCCTACTTCATACAGGAACAAGATGGTGCTACA TTGCTTGTATCTGCCAAGTTTACTGTTGTATCTGTCCGTAATATCTACCTTCAGTTTCAAGAGGTAATCATTTTAACTTA CATGAATATGCTTTCTACTATAGTTGAGATGCAATATATGTCTAAGCAGATGCTGGGATGTTTTAGCACATGATGTCATT TTGTGTTATGTAAATATTTGTTCCAATGTTGCAGTGATCATACATTTTTTTCCATGTCCCCATTTCTAAATTTTATCATA CAGTTTATACATTAGTGTTTATTCCTCAAGAAAATGTTAGAGCTTAATATATATGCCTTGCTTAATATAATCTGATTTGT TATTTGTAATGGTGATGGCCTCAAATTTTACTTCTGCATTATCTAAGGTTGATAAAAAGACTTTTATTTACTATTCTATT ACTTGGCTATTAATATATCATCTCCTTCCTTAGCTGGTATGGTGCTTTTATAACAAGCATGCAATTTATACATGGCAGAT CACACTTCAAGATATAAATATTAATGAACAGCTACAGGCTTTAATAGCTCCAGCATTGCTACCCCGATCTTATTTAAGTC TGCAGGTAATTCAATCATAACTTATGCCTGTCTGTTTGATTGTTAATTTGAATGCTCTTTGTTACTGGCATATGATATGA GACACCATTGATACCGTCACTTATGTCAAGGTGCTGTTTCTTCTGCAAATCCAAAAAATTCATGATATACTTTTTATGAA TAGCCTGATAGTCGGGTACGTGTGAGGACCAGTGCAAATCAACTATGTATATGACCTATGACTTAATGGTTGACAGATAT AGAGATGATAGACTCAACACATTGTTTATAGGTAGTATAAAATGTGCTTTTTTCCTGCAGATTTTACAATTTCTGCGTGC TTTCAAAGCTCAAATCCCGGTGAGGGATCCGGGAAGGTATAATTTATATCATGGACTACTCTGTTGAACTTGTTAGCAGT CGTTGTTGGATGAATATACACATGATGCTTTTTTGAATTGTAGGCAATCGGTAGGAGGACTATATTACCTTAGTTATTTG GATGATAACATGCTTTTGGGTCGTGCTGTTGGTGGAGGAGGGGTATTTGTGTTTACGAGAGCCCAGTCGCTCTACTGA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0341500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACTTAGCTTTCCGTTGCAGTTCACCCTTGTACCTTCCATCATCACCATCTACTACTACTAGGAAGCCCAGTAATTG CCATGTGAAATCATTCCCCAGAAAAATGTCACTGTCCATGGCAACTGCTCAGGCATATGATTCCGAGTTAGAGAACAAGA AGCTTCAGCTATTGACCTCTATCCAAGACACACAAAGGGGACTCCTCACAACTCCTGATCAACGCTTTTCGATCGAAGAG GCTCTCGTGAATGTAGAGGGTTGCAACAAGGGTGACCCCATCAATTTGAACAAGTTGGATGGAACGTGGCGCCTGCAATA TACTTCTGCTTCTGATGTTCTTGTTCTTTTCGAAGCTGCTGCTAGACTTCCTTTCTTTCAAGTTGGACAGATCTTTCAGA AATTTGAATGTCGTGATGAATCTAATGGAGGTGTTATCCGCAATGTTGTCCGTTGGAGTGTTCCAAATTTGTTAGAGGAA CAAGATGGTGCTACATTGCTTGTATCTGCCAAGTTTACTGTTGTATCTGTCCGTAATATCTACCTTCAGTTTCAAGAGAT CACACTTCAAGATATAAATATTAATGAACAGCTACAGGCTTTAATAGCTCCAGCATTGCTACCCCGATCTTATTTAAGTC TGCAGATTTTACAATTTCTGCGTGCTTTCAAAGCTCAAATCCCGGTGAGGGATCCGGGAAGGCAATCGGTAGGAGGACTA TATTACCTTAGTTATTTGGATGATAACATGCTTTTGGGTCGTGCTGTTGGTGGAGGAGGGGTATTTGTGTTTACGAGAGC CCAGTCGCTCTACTGA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0341500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDLAFRCSSPLYLPSSPSTTTRKPSNCHVKSFPRKMSLSMATAQAYDSELENKKLQLLTSIQDTQRGLLTTPDQRFSIEE ALVNVEGCNKGDPINLNKLDGTWRLQYTSASDVLVLFEAAARLPFFQVGQIFQKFECRDESNGGVIRNVVRWSVPNLLEE QDGATLLVSAKFTVVSVRNIYLQFQEITLQDININEQLQALIAPALLPRSYLSLQILQFLRAFKAQIPVRDPGRQSVGGL YYLSYLDDNMLLGRAVGGGGVFVFTRAQSLY

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31906:SF6 View details on PTHR31906:SF6 Search for proteins/transripts with this domain View external data on PTHR31906:SF6	20	270	251	1.3E-127	–
PANTHER	PTHR31906 View details on PTHR31906 Search for proteins/transripts with this domain View external data on PTHR31906	20	270	251	1.3E-127	IPR039633 Show description in modal box View details on IPR039633 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04755 View details on PF04755 Search for proteins/transripts with this domain View external data on PF04755	53	264	212	5.0E-24	IPR006843 Show description in modal box View details on IPR006843 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0341500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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