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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006843
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 32 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.754s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0108699.1
n.a. OBP3-responsive gene 1 isoform 2 [Theobroma cacao] gi|508776260|gb|EOY23516.1| chr0 47016971 47023538 +
2 domain predictions
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Lj0g3v0108699.4
n.a. OBP3-responsive gene 1 isoform 2 [Theobroma cacao] gi|508776260|gb|EOY23516.1| chr0 47017964 47023538 +
2 domain predictions
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Lj0g3v0128579.1
n.a. PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like [Cicer arietinum] gi|502076981|ref|XP_004485513.1| chr0 58083515 58085141 -
2 domain predictions
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Lj0g3v0354129.1
n.a. PREDICTED: probable plastid-lipid-associated protein 11, chloroplastic-like [Cicer arietinum] gi|502167724|ref|XP_004514232.1| chr0 186494351 186499200 +
2 domain predictions
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Lj0g3v0354129.2
n.a. PREDICTED: probable plastid-lipid-associated protein 11, chloroplastic-like [Cicer arietinum] gi|502167724|ref|XP_004514232.1| chr0 186494351 186498733 +
2 domain predictions
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Lj3g3v2038710.1
n.a. PREDICTED: probable plastid-lipid-associated protein 10, chloroplastic-like [Cicer arietinum] gi|502149514|ref|XP_004507558.1| chr3 26079282 26087535 -
2 domain predictions
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Lj4g3v2754450.1
n.a. PREDICTED: probable plastid-lipid-associated protein 7, chloroplastic-like [Glycine max] gi|356528534|ref|XP_003532856.1| chr4 37121244 37123222 +
2 domain predictions
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Lj4g3v2754450.2
n.a. PREDICTED: probable plastid-lipid-associated protein 7, chloroplastic-like [Glycine max] gi|356528534|ref|XP_003532856.1| chr4 37121244 37123222 +
2 domain predictions
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Lj5g3v0575460.3
n.a. PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic-like [Cicer arietinum] gi|502124594|ref|XP_004498593.1| chr5 6761664 6768304 -
2 domain predictions
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Lj5g3v0921240.1
n.a. PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic-like [Cicer arietinum] gi|502122788|ref|XP_004497895.1| chr5 13745074 13751939 -
2 domain predictions
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Lj5g3v0921240.2
n.a. PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic-like [Cicer arietinum] gi|502122788|ref|XP_004497895.1| chr5 13745074 13753121 -
2 domain predictions
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Lj5g3v1176860.1
n.a. Harpin binding protein [Medicago truncatula] gi|357441103|ref|XP_003590829.1| chr5 19020258 19022892 +
2 domain predictions
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Lj5g3v2294670.1
n.a. PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic-like [Glycine max] gi|356576885|ref|XP_003556560.1| chr5 33633067 33636485 -
2 domain predictions
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Lj5g3v2294670.2
n.a. PREDICTED: probable plastid-lipid-associated protein 12, chloroplastic-like [Glycine max] gi|356536542|ref|XP_003536796.1| chr5 33633067 33636485 -
2 domain predictions
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Lj6g3v1790930.1
n.a. PREDICTED: plastid-lipid-associated protein, chloroplastic-like [Cicer arietinum] gi|502079230|ref|XP_004486195.1| chr6 20069799 20071741 +
2 domain predictions
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Lj6g3v2271040.1
n.a. PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic-like isoform X1 [Cicer arietinum] gi|502076957|ref|XP_004485505.1| chr6 26311483 26314528 +
2 domain predictions
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LotjaGi1g1v0284100.1
n.a. Kinase family protein; TAIR: AT5G53450.1 OBP3-responsive protein 1; Swiss-Prot: sp|Q9LV04|PAP14_ARATH Probable plastid-lipid-associated protein 14, chloroplastic; TrEMBL-Plants: tr|A0A151TS62|A0A151TS62_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0284100 LjG1.1_chr1 69168021 69174648 +
2 domain predictions
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LotjaGi1g1v0284100.2
n.a. Kinase family protein; TAIR: AT5G53450.1 OBP3-responsive protein 1; Swiss-Prot: sp|Q9LV04|PAP14_ARATH Probable plastid-lipid-associated protein 14, chloroplastic; TrEMBL-Plants: tr|A0A151TS62|A0A151TS62_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0284100 LjG1.1_chr1 69168043 69174567 +
2 domain predictions
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LotjaGi1g1v0600700.1
n.a. Plastid-lipid associated protein PAP / fibrillin family protein; TAIR: AT4G00030.1 Plastid-lipid associated protein PAP / fibrillin family protein; Swiss-Prot: sp|O81304|PAP11_ARATH Probable plastid-lipid-associated protein 11; TrEMBL-Plants: tr|A0A1J7GKP6|A0A1J7GKP6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0600700 LjG1.1_chr1 114533027 114538586 +
2 domain predictions
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LotjaGi2g1v0335800.1
n.a. Plastid-lipid-Associated Protein; TAIR: AT2G35490.1 Plastid-lipid associated protein PAP / fibrillin family protein; Swiss-Prot: sp|Q9ZP40|PG1_PEA Plastoglobulin-1, chloroplastic; TrEMBL-Plants: tr|I1J4S3|I1J4S3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0335800 LjG1.1_chr2 81171620 81175797 -
2 domain predictions
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LotjaGi3g1v0341500.1
n.a. Plastid lipid-associated protein; TAIR: AT2G46910.1 Plastid-lipid associated protein PAP / fibrillin family protein; Swiss-Prot: sp|Q8W4F1|PAP10_ARATH Probable plastid-lipid-associated protein 10, chloroplastic; TrEMBL-Plants: tr|I3STB5|I3STB5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0341500 LjG1.1_chr3 71633702 71637939 -
2 domain predictions
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LotjaGi4g1v0406900.1
n.a. Plastid lipid-associated protein; TAIR: AT5G09820.2 Plastid-lipid associated protein PAP / fibrillin family protein; Swiss-Prot: sp|Q5M755|PAP7_ARATH Probable plastid-lipid-associated protein 7, chloroplastic; TrEMBL-Plants: tr|I3STX1|I3STX1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0406900 LjG1.1_chr4 78326391 78331520 -
2 domain predictions
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LotjaGi4g1v0406900.2
n.a. Plastid lipid-associated protein; TAIR: AT5G09820.1 Plastid-lipid associated protein PAP / fibrillin family protein; Swiss-Prot: sp|Q5M755|PAP7_ARATH Probable plastid-lipid-associated protein 7, chloroplastic; TrEMBL-Plants: tr|I3STX1|I3STX1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0406900 LjG1.1_chr4 78326391 78331520 -
2 domain predictions
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LotjaGi4g1v0406900.3
n.a. Plastid lipid-associated protein; TAIR: AT5G09820.1 Plastid-lipid associated protein PAP / fibrillin family protein; Swiss-Prot: sp|Q5M755|PAP7_ARATH Probable plastid-lipid-associated protein 7, chloroplastic; TrEMBL-Plants: tr|I3STX1|I3STX1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0406900 LjG1.1_chr4 78326469 78328785 -
2 domain predictions
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LotjaGi5g1v0064700.1
n.a. Plastid-lipid associated protein PAP / fibrillin family protein; TAIR: AT5G19940.1 Plastid-lipid associated protein PAP / fibrillin family protein; Swiss-Prot: sp|Q941D3|PAP8_ARATH Probable plastid-lipid-associated protein 8, chloroplastic; TrEMBL-Plants: tr|A0A151TZE7|A0A151TZE7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0064700 LjG1.1_chr5 10837898 10845883 -
2 domain predictions
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LotjaGi5g1v0140700.1
n.a. Plastid lipid-associated protein; TAIR: AT2G42130.4 Plastid-lipid associated protein PAP / fibrillin family protein; Swiss-Prot: sp|Q8S9M1|PAP13_ARATH Probable plastid-lipid-associated protein 13, chloroplastic; TrEMBL-Plants: tr|I3SSW0|I3SSW0_MEDTR Plastid lipid-associated protein; Found in the gene: LotjaGi5g1v0140700 LjG1.1_chr5 34674806 34684062 +
2 domain predictions
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LotjaGi5g1v0189000.1
n.a. Plastid-lipid associated protein PAP / fibrillin family protein; TAIR: AT3G23400.1 Plastid-lipid associated protein PAP / fibrillin family protein; Swiss-Prot: sp|Q9LW57|PAP6_ARATH Probable plastid-lipid-associated protein 6, chloroplastic; TrEMBL-Plants: tr|I3S0B9|I3S0B9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0189000 LjG1.1_chr5 47827006 47829838 +
2 domain predictions
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LotjaGi5g1v0362000.1
n.a. Plastid lipid-associated protein; TAIR: AT1G51110.1 Plastid-lipid associated protein PAP / fibrillin family protein; Swiss-Prot: sp|Q8LAP6|PAP12_ARATH Probable plastid-lipid-associated protein 12, chloroplastic; TrEMBL-Plants: tr|I3SRL8|I3SRL8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0362000 LjG1.1_chr5 67593749 67597401 -
2 domain predictions
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LotjaGi5g1v0362000.2
n.a. Plastid lipid-associated protein; TAIR: AT1G51110.1 Plastid-lipid associated protein PAP / fibrillin family protein; Swiss-Prot: sp|Q8LAP6|PAP12_ARATH Probable plastid-lipid-associated protein 12, chloroplastic; TrEMBL-Plants: tr|I3SRL8|I3SRL8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0362000 LjG1.1_chr5 67593749 67597401 -
2 domain predictions
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LotjaGi6g1v0289200.1
n.a. Plastid-lipid-associated protein; TAIR: AT4G04020.1 fibrillin; Swiss-Prot: sp|Q9ZWQ8|PAP_CITUN Plastid-lipid-associated protein, chloroplastic; TrEMBL-Plants: tr|A0A151T6N6|A0A151T6N6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0289200 LjG1.1_chr6 60645740 60647993 +
2 domain predictions
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LotjaGi6g1v0358600.1
n.a. Plastid-lipid associated protein PAP / fibrillin family protein; TAIR: AT3G26070.1 Plastid-lipid associated protein PAP / fibrillin family protein; Swiss-Prot: sp|Q9LU85|PAP4_ARATH Probable plastid-lipid-associated protein 4, chloroplastic; TrEMBL-Plants: tr|A2Q498|A2Q498_MEDTR PAP fibrillin; Found in the gene: LotjaGi6g1v0358600 LjG1.1_chr6 67048295 67050960 -
2 domain predictions
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LotjaGi6g1v0359400.1
n.a. Plastid-lipid associated protein PAP / fibrillin family protein; TAIR: AT3G26070.1 Plastid-lipid associated protein PAP / fibrillin family protein; Swiss-Prot: sp|Q9LU85|PAP4_ARATH Probable plastid-lipid-associated protein 4, chloroplastic; TrEMBL-Plants: tr|I3T8Z6|I3T8Z6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0359400 LjG1.1_chr6 67106347 67110217 +
2 domain predictions
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