Transcript — View — Lotus Base

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LotjaGi3g1v0341800.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0341800
Transcript ID	LotjaGi3g1v0341800.1
Related isoforms 1	LotjaGi3g1v0341800.2
Lotus japonicus genome version	Gifu v1.2
Description	Protein FAM32A-like; TAIR: AT1G16810.1 7-dehydrocholesterol reductase-like protein; Swiss-Prot: sp\|Q6GQN4\|FA32A_DANRE Protein FAM32A-like; TrEMBL-Plants: tr\|I3SW54\|I3SW54_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0341800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:71657245..71661846) extracted from Lotus japonicus Gifu genome v1.2.

ATTTTATTAAATTCAAAATTAATTGTGAGCTAACAAAATGGAGGGATGTGATTGAATGATGGTGTAAAACTTATTTACAC CGTCGGTGCATAGAAATTAATCTCTTATCTTATATACCACACAAAAAAAAAAACAAACACCAAAAATAAATTAAAATTGT AGTAAATCATAAATATAAAATTACAAATTTAGCCGGTAGTTAGCAACACATCTTTGATAGTGGTCTTCAATCCAAGTAAA TGGTAGTTCACATTTAGAAGACTTTATTATTTGGCTTAATCTTCATATTAGTCCATGTCTTTGTGTCGCCGTCTGAACCA GGTCCCTGATCGGAAAAATTTGTGGATTAAATCCCTCTCTTTTAAAAACGTATGGAGCAAGTCCTCGCCGGAGTCCAGAG CTCCGGCGAGTGATGATGTAGCGTGTTGACTGTGTAAATGATGCTTACGTGGTTTTTAAAAATAAATAAAAAATAAAAAA CAAATTACATATCAGAAAATTAAATTAAATTAATAAAATTAAAACCCCAATTTTTTTAAAACATAATTCAACCCTTTTAA TCTTCAATCTTAATCCGAAATCATCCATCTTCATCTATGTCTCATCACCCTTCATCAATCTTAGCCATACATCATCAACT CAACCTCCACCATCAAACCCCACAACCAGATAAGGTCAAATTCTTCATATTACTAAAAGAAAGGTATTGGCATAAGGGCA AAAACCAATTTGAAGGGAATAAACATACAAAGCCAGTATCAATTCAGAGGCTTGGATCGGTGAAGGATTAACCCAGAACA ATTAAGAGGAAAACCCAAAACAAGCATTAAAAGCCCATAATGGTTTTGTTCTTTCCTCCTTACACAGATCTGGGTTCACC TTCGATTTGAATGGCACCACAGATCTGAGCATCAAGTGAGAGAGAGATCGCGAGCAGAGGGAGAAGGAGACGCGAACAAA GATGGTGGATCCGGTGGCGGAGAGATCGACGCGCGACTCCAAGGCTTGTAAGAGGTAGCTTCTGGCATGGAGGTGGTGCG GTGAAGACGGAGCTCCCGACGGAAGTATGGGTGTTGGTCGCGCATGTCGGCGCGGCTGCGCACGGGTCATGGGTCTCTTT GCCAATTGGGATTGTTACTCTGAAATCAGAATCAACTTTCCCCCTTTTCGTTTCTTACTCTGGTGTTTTGGTTGGTTTGT TTCTTGGAAGGAAGGAAGGAAGAAGAATTTGACAGTGTTGATGCCATGGGATGAGGAAGGAATGAGAATTTGACAGGAAT GAATATAATGAAGGAAGGAAGAAGAATTTCAGAATCTGAAGGAGAAGAAGAACTCTAATTTGGGGGAAATTGGGTTAATT TGGGGGAAATTTATTTTTGTTAATTAAATTAGGGTTAGTTTTGTTAATTGGTTTTATATTTGCTAATTAAATTAAATTTC TGATGTGTTATTTTTTATTTTATTTTTTTTAAATCCACGTAAGCATTATCAAACCAGTCAGCGTGTCAAATCATCACTCG TTGGAGCTCCGGTCTCCGGCGAGGACCTGCTCCAAACGTTTTTGCATTGATGAGGACTTTTTCCACAAATTTTTCCGGTG ACAGACTTAGATCAGACGACGACACAAAGACAGAGACTAATTTGAGGATTAAGCCTTATTATTTTGTCCTTAAATGGTAG TTCAAGTAGTAAAAGCTATGGAACATATGAGTTTGGTGGGGGAGGTCCATAGATCAATTCCTGAAGTGTGTAATTTATAT TTTCGGTGTGGCCTTATTAAACTCACGCAAATATACCATAAATCTCTGGAAAATTTATCAACTTTATTTTATGCAATTTC TTTTATTAAATTATTTAACTGATCTTTTTATCTTATCTATCAGTTATGAATATTTTATCTCAACCGTCCACTTTTAAATC AAAGGCCACTTTTCTTGTCTAATAAATTTGGGGTAAAAAATACGAGTAATGATATATACACACCCCTTTATTTATACACT TCATTTTCACCTATTTTTATTTCTATCTCTCTCCTCTTATCATCTATCATATCTTATACTTTCTCTCTCTTACTTTTTCT TTTCTTTCTATCTCTTTCCTCCTCCACCTCTTTCCACCTCTAATAGAGGTGTGGACAAATAATTATTGAAAAAATACTTT CATGAACAGAACTGAGCCCTGCCTGAAGATCTGGTCGAGCGAGTGGAGTTTCACCCTTTCATTCGATTCAAGGTTTCGAT TTCTACCATGCTTTCTCATTCATGAATTTTGTTGTATACACTGTTTATCACTTCAAACTTTGCATCTGTTTTTTTTAGTT TTATTTTGATCGTTGCATATACCCAGTTCGCTAATCGATAGAATCAAATGTAATGAATCAATTTTTCATGCTGTCTGTGT TTTTTCATGTTTGCTTGTCAAAAATTGATTGTAAGATCGACGTTCTGGAACTTCTTTCGGTGCTAATTTACATGTTAGGG TTTTTGGTAGTACCCCAAATTTGAGGGGTTTTTTTTCATGTCTATTTTTGTTTGTTGGGTTGATAAAGAATTATTGTATT TGGTTTGCTTTCAGTTGAAATTGATTTTGGTTCCCATCGTCGCTCTGCAGAGATGTCGTCGTATGACAATGTTGTTGGTG GGAAGTTGAAGCTCAAGGGAAAAGCATTGGATGTGGCTGGTGGGATCAAGAAGAAGAAAAAGAAGAACAAGAGAAATCAA GAACAATTTTCTCAAGTTGTTGATGATGAAATTTCAGCAGGTTGGTATCTTTGTTTAAGGGCTATGAGTTATATATCCTA TTTTCTTTCCTTAACTGAGAGTTGTCGAATTGCTATGAAATTTCACCATGTTAAAACCTTTGCCTTCGGATAAGGCTCTT CTAAACTCTAATGTGAGCTTGTCTCTAAATGTGATCAAGTAAGATTATCTATCCTTGGTTGAATTTAAAGTATGTCATAA TCTTGACTCACTGTAGAGACAAGTTCACTTCAGAGGAGCTTTTCCATGATGGTTCTTGTTATATGGAACAACCATCCTGT GAAATGGTACATGGTTATATTAATCTCTAAATAGTTATCCTACATATACTGCACTAATGATTCATGAACTTGACATGGGG GTGAGGGATGAATATACAGCTCTAATTATTTGTTATTAAGATGGTTTGCCTATGGCCAAGAAAAAACACAATGAGAAAAT GGGTGAATTTTGAAGAACAATACCACATGATGACAGTAATAATCTTGACAAGAATATATGTGAAACTGTAAAGTTTTCTT ATTCATAAACTTTATCTGGGTAAACTTATGGCTTTATGTTTTTTTGGATAAGCCATTGAAATATATAATAAATAGGCAAC AAGGGGTGCCGCCCATAGTACAAGATATAAAGAAGAGGAAGGAAAGGAGAAGAGAGTTGAACAAAAAAAACAGAGACAGA AATAACGAAAGCAAGAAAAGTAAAACAGAACAGGGAAAAAAGAAAGAGCACTAGTGGAAGTGCTGCAATATATCCCTGCA AACCCCTTCTAAGAGCACTTATGGCTTTATGTGAAATTCTAAATAGTTCCTTAGTCCATTATTCCTCTTACTTGAATAGA GATTTTTCTTTTGGGGTTAAAAATGATAATGGGCAACATTTTAGGACAACATTCAACACATTTTAGGATTCAATTTCATA TATTATTACTTGTTTATGAGTTGCAGTAAGCAGGGAACTATTGTGCAGAATAGATTTTTCTTGAATGGTTTACAATTCAG ATCTTTTTGATTCACATTTCTCTGATCTTTTTATTGGTAGTTCACCATTATGCAATACACATACATTTATATCAACACTT ATGTTTATTTTATTTTTTATATAGGTGGAAGTACAGAACAAGCAAAAGAGCCTGATGAGCAAGACGAGATAAATGATGAT GGCAGATTGAGCGGAGAAGAAAAGACTGCGCATTATGATGATCATCTTACACCAGCAGAGAGGCGATACATAGAGCAGAG GGAGAAACTTGATGTCAATAGATTGGCCAAGATTTCTAATAAATCACACCGTGATAGAATTCAGGATTTCAACCAGTATC TTGCAAACATGAGTGAGCATTATGATATTCCTAAAGTTGGTCCAGGATGATTCAGTGAGGTGTATAAGTATGAAGGACAA TCCCCTATCGTTTGTGTTTGTTAGTCTAAGTTTGATGCCTTGTGCATGCACATTTGTTGTCACTATACATTTATCTTTTG GCTTTAAGTATGCTATATTTCAGGAGACATTATTTGATTTCTTTGCTGTGGATGGGCAAATGATGTTATTGACTTTCAAT GAATTTCCACCCTAACTGTGCAAGAAATGTAAAAAAGGCTTATTTTACTTGGCTGTTAGATTCTGAATTCTAATGACACT CTTTTCAACTTACTCTGTAATAAAAACATTTAGAGTTATGAGTCACACAAAATTTAGTGTGTTCACTCTCACTTTAATAT AATTTATTTTCAATTTGGTAAAATTTATATAAATTTCATCTATTAATAAAAAGTGTATTGGAACAGAGTATGTTAAAAAG TGTATACCGTATAGATATCATTTTATATCCTTCTGCAGGGGA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0341800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCGTCGTATGACAATGTTGTTGGTGGGAAGTTGAAGCTCAAGGGAAAAGCATTGGATGTGGCTGGTGGGATCAAGAA GAAGAAAAAGAAGAACAAGAGAAATCAAGAACAATTTTCTCAAGTTGTTGATGATGAAATTTCAGCAGGTGGAAGTACAG AACAAGCAAAAGAGCCTGATGAGCAAGACGAGATAAATGATGATGGCAGATTGAGCGGAGAAGAAAAGACTGCGCATTAT GATGATCATCTTACACCAGCAGAGAGGCGATACATAGAGCAGAGGGAGAAACTTGATGTCAATAGATTGGCCAAGATTTC TAATAAATCACACCGTGATAGAATTCAGGATTTCAACCAGTATCTTGCAAACATGAGTGAGCATTATGATATTCCTAAAG TTGGTCCAGGATGA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0341800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSSYDNVVGGKLKLKGKALDVAGGIKKKKKKNKRNQEQFSQVVDDEISAGGSTEQAKEPDEQDEINDDGRLSGEEKTAHY DDHLTPAERRYIEQREKLDVNRLAKISNKSHRDRIQDFNQYLANMSEHYDIPKVGPG

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR13282:SF8 View details on PTHR13282:SF8 Search for proteins/transripts with this domain View external data on PTHR13282:SF8	1	137	137	2.0E-51	–
PANTHER	PTHR13282 View details on PTHR13282 Search for proteins/transripts with this domain View external data on PTHR13282	1	137	137	2.0E-51	IPR013865 Show description in modal box View details on IPR013865 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF08555 View details on PF08555 Search for proteins/transripts with this domain View external data on PF08555	4	98	95	2.8E-17	IPR013865 Show description in modal box View details on IPR013865 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	23	87	65	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	56	87	32	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0341800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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