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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0344500 |
| Transcript ID | LotjaGi3g1v0344500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATPase subunit 8; TAIR: AT2G07707.1 Plant mitochondrial ATPase, F0 complex, subunit 8 protein; Swiss-Prot: sp|P41248|YMF19_HELAN Putative ATP synthase protein YMF19; TrEMBL-Plants: tr|A0A110BE97|A0A110BE97_9FABA ATPase subunit 8; Found in the gene: LotjaGi3g1v0344500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72186595..72187077) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCTCAACTGGATAAATTCACTTATTTCACACAATTTTTCTGGTCATGCCTTTTCCTCTTTACTTTATGTATTCCCAT ATGCAATGATGGAGATGGAGTACTTGGGATCCGCAGAATTCTAAAACTACGGAACCAACTGGTTTCAAACTGGGGGAACA AAATCCGGAGCAACGACCCCAACAGTTTGGAAGATATCTTTAGAAAAGGTTTTAGCACCGGTTTATCCTATATGTACTCT AGTTTATTCGAAGTATCCCAATGGTGTAACGCCGTCGACTTATTGGGAAAAAGGAGGAAAATAATTTCTCTCTCTTGTTT CGGAGAAATAAATGGGTCACGAGGAATGGGAAGAAACATCTTATATTTTATCTCGAAGTCCTCATATGGCGCTTCTTCTT CAAATCCTGGATGGGTGATCACTTGTAGGAATGACATAATGCTAATCCATGTTCCACACGACCAAGGAAGAATCAAAAAA TAA
CDS sequence (LotjaGi3g1v0344500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCAACTGGATAAATTCACTTATTTCACACAATTTTTCTGGTCATGCCTTTTCCTCTTTACTTTATGTATTCCCAT ATGCAATGATGGAGATGGAGTACTTGGGATCCGCAGAATTCTAAAACTACGGAACCAACTGGTTTCAAACTGGGGGAACA AAATCCGGAGCAACGACCCCAACAGTTTGGAAGATATCTTTAGAAAAGGTTTTAGCACCGGTTTATCCTATATGTACTCT AGTTTATTCGAAGTATCCCAATGGTGTAACGCCGTCGACTTATTGGGAAAAAGGAGGAAAATAATTTCTCTCTCTTGTTT CGGAGAAATAAATGGGTCACGAGGAATGGGAAGAAACATCTTATATTTTATCTCGAAGTCCTCATATGGCGCTTCTTCTT CAAATCCTGGATGGGTGATCACTTGTAGGAATGACATAATGCTAATCCATGTTCCACACGACCAAGGAAGAATCAAAAAA TAA
Protein sequence (LotjaGi3g1v0344500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPQLDKFTYFTQFFWSCLFLFTLCIPICNDGDGVLGIRRILKLRNQLVSNWGNKIRSNDPNSLEDIFRKGFSTGLSYMYS SLFEVSQWCNAVDLLGKRRKIISLSCFGEINGSRGMGRNILYFISKSSYGASSSNPGWVITCRNDIMLIHVPHDQGRIKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 159 | 159 | 1.3E-77 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Pfam | 2 | 82 | 81 | 1.7E-19 | ||
| Phobius | 12 | 29 | 18 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 30 | 160 | 131 | - | – | |
| Pfam | 93 | 144 | 52 | 2.0E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Mitochondrion | A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0344500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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