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LotjaGi3g1v0345600.4

Overview

Field Value
Gene ID LotjaGi3g1v0345600
Transcript ID LotjaGi3g1v0345600.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description GATA transcription factor; TAIR: AT1G51600.1 ZIM-LIKE 2; Swiss-Prot: sp|Q8H1G0|GAT28_ARATH GATA transcription factor 28; TrEMBL-Plants: tr|A0A151RPA5|A0A151RPA5_CAJCA GATA transcription factor 25; Found in the gene: LotjaGi3g1v0345600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:72316136..72319786) extracted from Lotus japonicus Gifu genome v1.2.

ATGGATAGTATTAATGGGGGTGATTCTCGGACACACATCAGTGATGAACAACATTCTTTGCTTGGTCCATATGTGCAAGA ACATGAGCATCATGAATTGCACCATATGAGCAATGGGAATGGGATTGATGATGATCAGAATAACGGTGACAATACTAACT GTGGTGGAGGTGAGAGTGTGGAAGGTGAAGTTCCCTCCAACCATGGAAATATCCATGACAATCACACTGTAATGGTGGAT CAAGCGAGTGATGGTGGGGATCAGCTTACATTGTCTTTTCAGGGCCAGGTTTATGTCTTTGACTCGGTTTCACCAGATAA GGTGCATCAACTTATCTGAGCTTTTTACTCTTGCATTGACATGGTATTATCTTCTGTTTGAAAAGCCTTTGCTGAAAATA TTAATTTCCTGTAGATTACTTCAATTATATCAGTTTAATGACTCCATAATGTTTGCGTGTGAGAGAGAATCTATGCATGA AATCATTAAACACAGGAATGCTTGAGTTATAAATAATAGAATCCATCTTTGAAATTATTGTCAAGTGGTGCACTTCATGA CCATTTATGGATCCTTACATGCTTGCTTCAGCAAATATTGCTGTAATGCACTTTATGGACTCAAAGCTGTGAATTCCTAG TTACACGGCAATAACTCCAACAGATGACAGCTACGCTTTTATAGCAAAAAGCACAATTTTATAATTCACATGGATAACAG CTACGCATGTTTGGTTTTTCCTTCTTCTAGCACTGGTCATTATTGTTGCTAAATTGGATCAAACAAGAAATGTTGACTTT TTTCTAGCTCAGGAACCCCATACTTTATATGCACAGGTATCGATTTTGTATTGTCTCAATTTTCAATGCTTTTCATATTG GAAAGCTTATCATACTATGCAGTTTAACATGCTTTTTGGCATGTATTATAATATGATTTGAAAGACTGCTTCGGTATAAG ATAATTAAGGAATTCTTTCCATTATTAATCAAGCTGCGGACCTACTTAGAATTTGATTCATTGAAGAAAATTATTTATGA TAATCCTAGGGTGTCATTCTCAGGTTCAAGCTGTACTGCTGTTACTGGGAGGCCGTGAAATACCTCCAACTGGGCCTGCT ATGCCAGTTTCTCCTCACCAGAATAACCGGGTATTACTACATTATTTGGTTAGAGTGTGACTTATAGCATTATGCTAGTA AAATATCTTGCTCATGGAGTATTTTATCAGGGGTTTTCTGGTACTCCACCAAAATTCAGCGTCCCTCAGAGAATAGCATC ATTGATTAGATTTCGTGAAAAGCGGAAGGAACGAAATTTTGAAAAAAAAATCCGTTATACTGTTCGTAAAGAAGTAGCGT TGAGGTATTGTGCTTACTATCATTATAACTTAGATTAAGCTATCATGGAATATTAGTTTATGTGGAAATCATAACTTCAC TCTACAGTCTACTCAATTTATGTTTGTAAATGTTTTGAGTTGTTGATAACAGTAAAAGGGTGGAAAGGAGGAAGTAGTGG CAAGTTCCTTGAAGGGTCTGCAATCATATATATTTTCCTTTTAAAGCTGCCTTGCCTTCCAACCATTGTTAACTATTTCT CAGGATTCTCTTATCACCCTCCCTCAAAGTGGCTGGTAGTACACCATAAGGAACATGACAATTTCCTCTAGTTGGACTCC ATCTTGAGGAATCCTTAGGTCCATTGCCATTACCTATTTTCACTTACTGAATTCCAACATATATATCTCCATTTTCTGCT CTTGAGAATACAATTGAGCCCAATAAGCTTCTTGTGATCTACAAAATTACTCCACTCCCCTTTTCAGAGATCTCCTTGTT CTCTTCCCCGAGTTTCCTCTAAACTTTCACAGCCTTCTTTGTCATGTTTCATCCTTCAGGGATGTTTGGTAGGTGTCCGG GCTTCCTTAAAAAATCCTTATGGCAAGAATGCTGCTTAACATTGTATGACATTGAACTAGTTGCTAATTTCCTGCTGGTG TAGTGAGGTTTGAAATGAGTGATCCCACTTCTGATGTAAGTAATGAGTGATCCCCCTTCTTTCTTTGCTCTGCATAATAC CTAGGAAAAGAAAATTTGCACCATTGTTAACCTTCGATTTGGTCCCTAATCTTTGCAAATGAAAATGGCTTGTCCTGAGT TTATAGGGCTCAAGTTTAACATAGGTTCACAAATTCAAGCTTAAAATGAAAATTGGATGGCTTATAATACCAAAAGTCTC ACATTTTAAGTACCTTGGAGGCTTGGACTTGGATCTATCTTACAAAGTAACGGAGATAAAGATGGTGCTGAGCATAGGAT CCACGCAGTGTGAATGGAGGATTGCTTTGAGTATAATTTGCAATCAAAAAGTACTGCATAAGCTTGAAGGAAAATTTTAT CACAGCTATAAGACCTGCAATGTTGTTTGGGATTGAATATTGGATGATGAAAAGCTAGGCTAGTATTGCAAAGATGAGAA TATTCCAATGGCTGGGTGGTCATGCAAAACAAGATAGGATTAGGAATGAAATCATTAGAGAGGTTGTTTGTGTAGCTCTT ATTGTCGAAATGATGGCAGAGTCTTGTATTAGCCTCTTAGGTTATTTTTGTTACTTTTATAGATACCTCGTTGTAGCTTT GGGAAATCATGTATAAATTCTTTCAAAATCATGTAGCCTTCACAGGCATGGTTTAACTCAGCAAAATTGTTAGGGACATC ATGGATACTCAACACTCCAGTAAAGTTCCAGCTTAACTCCGTCTGAAATATGTGCATCTACCATCTTCTAGCTTTAGCCT TCTTAAAGTTATGTAATAGCATAAATATAGTGAATGTATGAGATCTGGCAAGTTTATATGCTGTTGTCTGTTATTTTGTT ATATTTGCACCACTTGCTGACAAATACATGTTGACTTCTGTAGGATGCAAAGAAATAAAGGTCAGTTTACATCTACCAAG TCCAACCATGATGAATCTACTTCAAATGCAACAAATTGGGGAACAAATGAAAACTGGACGGGAGACAATAATGGATCCCA ACAGCAAGATATTGTGTAAGTTCAGTGGTTCATTCTGAAACAAGAGAGACAAAACTATGAATAAGTATTCTGGATTTTAT GGTTAACTTTATCATGGCTTGAAATGAAAGCCTTAGTCTAGTCCCTTTGGAAACTTTTGAGCCTATCCTGAATTCATCTT GTAAATTTTAATTGATGAATTGTGTATTCTATCAATTCATGGCAGTTGTAGACACTGTGGCACCAGTGAGAAGTGCACAC CAATGATGCGGCGTGGGCCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTATGTGGGCAAATAAGGTAAAATCG GAGCTATGTTTATTCCTTATGTCCTCTACTGTTTGTCTTTTCTATGTTGTTCTATAAAATTAACTGTTATGGTATATGTT TTTCTCTAAACAACTGAAAAAGTACCTTGTTGTGGTTTATGTCCCTTCTAATACATTATGGACATCTTAATATTATCCAT TGAATTATGTGCATATACTATCTTGATATGAATGTTAATTTGCAGATGTTATATCATGCAGGGCTCCGCTGGTCACTAAT AATATTAGATGCTATTGTGTTTAATGCATGTTTCATCTAGACATTAATTCA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0345600.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATAGTATTAATGGGGGTGATTCTCGGACACACATCAGTGATGAACAACATTCTTTGCTTGGTCCATATGTGCAAGA ACATGAGCATCATGAATTGCACCATATGAGCAATGGGAATGGGATTGATGATGATCAGAATAACGGTGACAATACTAACT GTGGTGGAGGTGAGAGTGTGGAAGGTGAAGTTCCCTCCAACCATGGAAATATCCATGACAATCACACTGTAATGGTGGAT CAAGCGAGTGATGGTGGGGATCAGCTTACATTGTCTTTTCAGGGCCAGGTTTATGTCTTTGACTCGGTTTCACCAGATAA GGTTCAAGCTGTACTGCTGTTACTGGGAGGCCGTGAAATACCTCCAACTGGGCCTGCTATGCCAGTTTCTCCTCACCAGA ATAACCGGGGGTTTTCTGGTACTCCACCAAAATTCAGCGTCCCTCAGAGAATAGCATCATTGATTAGATTTCGTGAAAAG CGGAAGGAACGAAATTTTGAAAAAAAAATCCGTTATACTGTTCGTAAAGAAGTAGCGTTGAGGATGCAAAGAAATAAAGG TCAGTTTACATCTACCAAGTCCAACCATGATGAATCTACTTCAAATGCAACAAATTGGGGAACAAATGAAAACTGGACGG GAGACAATAATGGATCCCAACAGCAAGATATTGTTTGTAGACACTGTGGCACCAGTGAGAAGTGCACACCAATGATGCGG CGTGGGCCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTATGTGGGCAAATAAGATGTTATATCATGCAGGGCT CCGCTGGTCACTAATAATATTAGATGCTATTGTGTTTAATGCATGTTTCATCTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0345600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDSINGGDSRTHISDEQHSLLGPYVQEHEHHELHHMSNGNGIDDDQNNGDNTNCGGGESVEGEVPSNHGNIHDNHTVMVD QASDGGDQLTLSFQGQVYVFDSVSPDKVQAVLLLLGGREIPPTGPAMPVSPHQNNRGFSGTPPKFSVPQRIASLIRFREK RKERNFEKKIRYTVRKEVALRMQRNKGQFTSTKSNHDESTSNATNWGTNENWTGDNNGSQQQDIVCRHCGTSEKCTPMMR RGPEGPRTLCNACGLMWANKMLYHAGLRWSLIILDAIVFNACFI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
35 73 39 - –
PANTHER
PTHR46125:SF5
39 262 224 7.6E-118 –
PANTHER
PTHR46125
39 262 224 7.6E-118 –
MobiDBLite
mobidb-lite
40 55 16 - –
SMART
SM00979
82 117 36 1.1E-11
IPR010399
ProSiteProfiles
PS51320
82 117 36 15.086
IPR010399
Pfam
PF06200
86 116 31 1.1E-12
IPR010399
Pfam
PF06203
150 192 43 3.3E-15
IPR010402
ProSiteProfiles
PS51017
150 192 43 13.086
IPR010402
MobiDBLite
mobidb-lite
188 211 24 - –
Gene3D
G3DSA:3.30.50.10
215 265 51 3.2E-10
IPR013088
SMART
SM00401
220 273 54 1.8E-9
IPR000679
SUPERFAMILY
SSF57716
221 262 42 1.05E-10 –
CDD
cd00202
225 260 36 6.45139E-12
IPR000679
Pfam
PF00320
226 261 36 6.7E-14
IPR000679
ProSitePatterns
PS00344
226 253 28 -
IPR000679

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0345600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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