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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0346100 |
| Transcript ID | LotjaGi3g1v0346100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chloroplast protein; TAIR: AT1G16080.1 nuclear protein; Swiss-Prot: sp|A9BHA4|RL4_PETMO 50S ribosomal protein L4; TrEMBL-Plants: tr|I1KVP9|I1KVP9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0346100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72368174..72371220) extracted from Lotus japonicus Gifu genome v1.2.
ACCGAACTGCAAACACTCTAATTAATTTGAGGGAGTATAATACTAGGGGATGAAAAGTAGAATTAGAAAAGCACATGCCC TTGGTACGTGTTCGGTTTGAGTCCATTTAGCAAAAGCTCATGATAAAGTGACAAGTCGTAAACAAATGGAAAAAATGTGA AACGTGAGACATAACCTTCCCCAGTTCCCACAATAAAATCAATGACAACCGAAAACGAGTGGCAATGGTGTGAGTAACTT GGATACTGACAAACACAATCACATCGCTTCACACATCCTCAAAACATCTCAAACCCAATGTCCATTTTTTCGTTTGTTGT TTCCCTCCACCACCGTCACTTTTTGTGTGAATGAACAGCTATGACCAGCTCACTCATTTTCCCCCTTTCCACCTCAACTC TCACGTTTCCCTCACCCTCCACCACCTCCCGATTCAGAGTCTCCGCCATGGCCACCAGCGTCGCCACCAAGGTCATGCCC GCCGTCATTGTCGGCGGCGGCAGGGTGGGAAGAGCTTTGCAAGAAATGGGTAGCGGGGAAGATCTTCTCCTTGGGCGAGG AGAGTTCGTGCCTCTTGAATTTGAGGGCCCCATCTTGGTTTGTACCAGGAATGATGACCTTGATTCTGTGCTTCAGTCTA CTCCTCCTTCTAGATGGAATGGTATGTTCTTCAATTCTTCCATATTTATGGTTTGTGATTGTGAGGTTCTGTGATTGAGG ATGAATGGGTTGATGGGGTGTGGCAGATTTGGTGTTTTTCCAGAATGGAATGCTGGACCCTTGGCTTCAGAGTAAAGGTT TGAGTGATGCAAACCAGGTGTTGGCTTATTTTGCTGTGTCAAAACTAGGAGAAACCCCTATTGATGGAAAGACTGATACC AATCCTGAAGGGTTGACTGCTGCTTATGGCAAATGGGCTTCTGTTGTTTCTGCAAGATTACATGCTGGAGGCCTCTCTTG CAAGGTGTGAATTAAATTTATCTTGCAATGCTCTTTTCTTTCTAGTAGATTTGAGTGTTTTGAATGTCATGTACTGTAAT TTATTTGACTATTTACTTTGTTCTTTCTTAAAAGTGAAATTGTTGTGAATCTGTACACATCTGATAACATATCACGGGTT GATCTGTTTCGAAAGCCAGGTTCTTGACAAGGAAGCATTTCAAAAGCAGATGTTAGAGAAGCTCATATGGATTTGTTCTG TCATGCTTGTTGGAGCACGTCATGGAGGGGTTTCTGTAGGTAACGTGGAAAAGGAATTCCACTTGGAAGTAAGCTTTGCA ATTGCCATTTTCTCATAGTTAAATTGCGTGTTCTGTCAATAAACATTCGCTTGGTTGGAAGATAATATTGTAATATGTAC ATGTATAGATTGAGTTGTGTAGTTAATTGGATGGTTTGTGATTGCAATCAGAGTCTTTTATATATGTGTGTGCATGCATA TATGTATATATATTTCTTCTTCTATCCAAAATGGAAGAATCAGTTTCCTGCATCTTTTTAGCAGAACTGAATCTGTTAGT AGTTGGTGCCATTTGCAAGTAGGGGTGCAAATGAATTGGGAAATGGCTCCAAGTTTTGGGTGAAATAAGTTATCATGAAA CATGTTTGAAGTTAACAATCTATGTATTCATCTGTTGTGGTATGTTTGAGGGGTTGATCCTGGACATACAGAGCTTGTGT CCCAAATGGATGACCTGATATTGGACTAGATTGTGCTTCTTATATAAATAGTAGATATACATATTTGAACATGAACCAAG TTTCAACTGTGATGTTGGGCATAAAACAGAGCCCAAAAAAGAAGCAACTGTGAAGATTTTTTAGACAAATATTTTGAGCC TATATAATGATTTATTGAACCAAAAATGGAGTCAGAACTAACTCATGTTTACACTTTCAGCTGTGTAGCCTTATATCAGA ACTAGCATTAGCGGCAGCAAGTGAAAAGGGGTTAACATTCGAAGAAGGCATGGAAGACCGCATGTGTGCATACTCGCGAG CTGTAGCCCATTTTCCCACTGCAGTTAAGGAGGTAATGACACAATTGATGGAATGAATCTTTAATGAGGAGTGGTAGCAA CACATTCTTTAACACTTGCCTCGTAAATAGATTACTTTTAAAAAAATGTGTCAGACTTTGTAAAAATATGAACAAATCAT AGAGTGGGATGAAAAGTGTGATAAAAAAAGTTGAATTGCTGGCATTTCTCATATTCAATTCACAAGATACCTATGGTATT TGCTCTTATCTGTATCTTGGCTTTGCTTGCAGTTCAAATGGAGGAATGGTTGGTTTTATTCTCTTTCGGAGAAGGCTACT GCCCAAGGCAAGCAGGATCCATGCCCTCTGCATACTCAATGGCTAAAAGAGTTAAAGATTGTATAAGATTTCAACTCTCA TGCGTCACTGGGTTACAAACTTCCAAGAGTTATATGTAAACTGTAGTGACTAGGTTGAAAGAGTAGTTGGTTACCAGCTT GTAAGATTTATTCATGCGCCACTAGGTTAGTAGCTTTCAAGAGTGACTAGGTTTGACAGAGCAATTCGTTTTATCAGCTT GCAAGATTTGTTTGTGTTAGAAGGGATTGGAAAGACAATTTTATTAAACTTTTCTTTTTTGATACAAAGAGGCCCTGAAA AGTTAGACTGAAATAGGGAAAGAAATCCCAACACAATCATTACGGATTAAATCCCTGCACCTAGGAGGAGGTGAATCCAT GAGATGAATACCCATCTCCAGCTCACTGCTCATGGGCTAATCCCTTTGTGCCTGGGCTTATCTATGTGCTCAGTGGTGTT ATTTGAAATTGATTTTGGTCCATCTTTAATACTCCACTTGCTTCAGCTTAGTTGTGTTTGTCGTTAAGTTACTTACGAAG TTCTTGTGTAAACTCTAAACTGTGTTATTATTGGCTGGCTTCAAGGAAAACAAATTCACTTTAAGTGATGAAGAGAGTTA AAAATTTCTCTTCATGTTGCCTCTGTTCCCTTTTCTTCGTATAACAATTTTTGTTGACGTCATCGTGTCAAACTGTCAAT AGGTAGC
CDS sequence (LotjaGi3g1v0346100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCAGCTCACTCATTTTCCCCCTTTCCACCTCAACTCTCACGTTTCCCTCACCCTCCACCACCTCCCGATTCAGAGT CTCCGCCATGGCCACCAGCGTCGCCACCAAGGTCATGCCCGCCGTCATTGTCGGCGGCGGCAGGGTGGGAAGAGCTTTGC AAGAAATGGGTAGCGGGGAAGATCTTCTCCTTGGGCGAGGAGAGTTCGTGCCTCTTGAATTTGAGGGCCCCATCTTGGTT TGTACCAGGAATGATGACCTTGATTCTGTGCTTCAGTCTACTCCTCCTTCTAGATGGAATGATTTGGTGTTTTTCCAGAA TGGAATGCTGGACCCTTGGCTTCAGAGTAAAGGTTTGAGTGATGCAAACCAGGTGTTGGCTTATTTTGCTGTGTCAAAAC TAGGAGAAACCCCTATTGATGGAAAGACTGATACCAATCCTGAAGGGTTGACTGCTGCTTATGGCAAATGGGCTTCTGTT GTTTCTGCAAGATTACATGCTGGAGGCCTCTCTTGCAAGGTTCTTGACAAGGAAGCATTTCAAAAGCAGATGTTAGAGAA GCTCATATGGATTTGTTCTGTCATGCTTGTTGGAGCACGTCATGGAGGGGTTTCTGTAGGTAACGTGGAAAAGGAATTCC ACTTGGAACTGTGTAGCCTTATATCAGAACTAGCATTAGCGGCAGCAAGTGAAAAGGGGTTAACATTCGAAGAAGGCATG GAAGACCGCATGTGTGCATACTCGCGAGCTGTAGCCCATTTTCCCACTGCAGTTAAGGAGTTCAAATGGAGGAATGGTTG GTTTTATTCTCTTTCGGAGAAGGCTACTGCCCAAGGCAAGCAGGATCCATGCCCTCTGCATACTCAATGGCTAAAAGAGT TAAAGATTGTATAA
Protein sequence (LotjaGi3g1v0346100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSSLIFPLSTSTLTFPSPSTTSRFRVSAMATSVATKVMPAVIVGGGRVGRALQEMGSGEDLLLGRGEFVPLEFEGPILV CTRNDDLDSVLQSTPPSRWNDLVFFQNGMLDPWLQSKGLSDANQVLAYFAVSKLGETPIDGKTDTNPEGLTAAYGKWASV VSARLHAGGLSCKVLDKEAFQKQMLEKLIWICSVMLVGARHGGVSVGNVEKEFHLELCSLISELALAAASEKGLTFEEGM EDRMCAYSRAVAHFPTAVKEFKWRNGWFYSLSEKATAQGKQDPCPLHTQWLKELKIV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| PANTHER | 14 | 296 | 283 | 4.1E-153 | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| Phobius | 25 | 297 | 273 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0346100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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