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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0346300 |
| Transcript ID | LotjaGi3g1v0346300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP2-like ethylene-responsive transcription factor family; TAIR: AT1G16060.1 ARIA-interacting double AP2 domain protein; Swiss-Prot: sp|Q94AN4|AP2L1_ARATH AP2-like ethylene-responsive transcription factor At1g16060; TrEMBL-Plants: tr|A0A072UFX2|A0A072UFX2_MEDTR AP2-type transcription factor; Found in the gene: LotjaGi3g1v0346300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72402828..72408249) extracted from Lotus japonicus Gifu genome v1.2.
GAGTAAAAGGAAAATCACAAGTTAAGGAGTTTAATAACCGACAAAAACAGGGGAGAAAACCCATGAGTTAAAAAAAAGAA TATACCATTTAAGAAATTTAATGACCGACCAAAAGAGGGGAGAAGAACCCACAGGCCACAACTCCAAAGCATGGATAAAT ATGGTCTAAAAGTTCCAAACCACTTGGATAGTTGGATTGATACACACCCCCAATAAACACCACCTTTTATTTTCCCTTGC CGTCCATAATTTTTTCCCATCTTCAAATCTTTCTACTCAACTACCAACTGCATCACAACATGAACGAGAAAAAGGAGAAA GAAAATAAAATCTTACTATTGAAATATTGAAAGATGAAGAGTGAGAGAAGGAGAGAAATAAAGAATTAGACCTACTTTTT CACTCCTCACTGCACTATTTCTATTAATTAATTAATGCCTCCGTTCTTATTGGATGACTCAGTCATATTTATATAACAAC TCTGATTCCCCTTCACTCTTATGCGCATGTAGTGCAGTGGTCCTCTCTGATCTTGTGAGCTTTCATGGCGAAGAAATCGC AGAAAAGCCTCAAGAACAACACTGCTTCCACTAACAACAGAAGAAGTAAGAATAAGACACCAAAACCAGTGAAACGGACA CGCAAAACCACCTCAAGAGACTCACCTCCACAGCGAAGCTCAATCTTCCGGGGTGTCACAAGGTGAGATATAATATCAAT TCACATCTATATGTAGATCTTCTATTTTCCTCTGTTTTTCTCTGTTTCATACTATTATATATTTTGAGATGGGTGATTAT GCATGTGGTATTTATTAGACATCGATGGACTGGTCGCTATGAGGCTCATTTATGGGATAAGAATTGCTGGAATGAATCAC AGACCAAGAAAGGAAGACAAGGTTCTTATTTAATTAATTAAGTTTCTCTTTTCATATTTCTAGCTTAATTTCATGATCTC TTTCACTTAATTATTTGATTTATTGTCATCTTACATATGTTGTATTGGTTGGTGATGGCAATGGAAAACAACTTGCTACA GTATATCTAGGTATGATTTGAATTTTAGTTTATGTAACAGTAATCATTCACAAAAACCTTCATCTATAAATGTGTTTTTT TTTATTCTTAGTAATTTTTCTACTTAATTTGTTAATTTTGAGAGTTGAAGTTCCTTGTGAATGGGGGCGATTTAATGAGT GAAAAGTTGGGTTTGATTTGTTAGGGGCATATGACAATGAAGAAGACGCAGCACGTGCCTATGACTTGGCAGCATTGAAG TACTGGGGCCAACACACCATTCTCAACTTTCCAGTATATATCTCTTACCCTTTACTCAAATCATGATTTGGTAAAAAAAA ATATATTCAGAACTAGATATGATGAGTTCATTATATAAATATTTTTGGTTATAGTTATCAAATTATCCAGAGGAGCTCAA GGAAATGGAGGGACAGTCAAAAGAAGAATACATTGGATCCTTAAGAAGGTTTAGTTGTTAAATCCTTAATATTAACCTTT TATTTGTTTCTTTGGAGCTATTAATGTCTTTTTCTCAGGGTTTATGTGACTTCATAGAATCAATCTTCATTCTTCAATAT GCAGAAGAAGCAGTGGGTTCTCTCGAGGAGTCTCAAAATACAGAGGAGTTGCAAGGTACAGGGGATTTATTGCAAAATGC AATATTCTGTGACATTTGAATATTATGATCATTTCCACGCTACTACTTATCAAAAGGGGATGAATCTGTTCTTTCAATAA AATAAATCAATGATTGTTTTGTTGAAGTTTGAAAGTGGGACACACACAACATACATGTAAAATAATTATTTTTTTTAAAG AATGTGATAATTTAATTAAAGTGGAGTTGATGGAATAGAAAGCTAGGTTAGTAGTCTTGTTATGTTTATGGTTTTCATTT TGGACAAAACTTAAGGACACTTTTTTAGATGCAGTTTTTACTGTACTTCAAATACAACATGAGATGTATTTAAATTTTGC ATACCCAAGAACTTTAACTAGAGTTTACTGTTCTTTCAAACCTGTGATATCCACAAATTCGGTTATTGATGAAGAACAGC AGAACATTGGTTGAGGTTCATTTATTTCACATTGGAAGCTTTGACTCAAAGATTTCATATAAATTATCCTAATTTTTGTT GTCTCTAGTTCAATTTTAATAGTTTAATTCCCGCAAAATTTGAGGTTACTATAATTATTTTAAATAAAATTTTAATTATT TATTCAAATGAAGGGGATTTTTTTATAAGCAAATGAAGGGGATTTATAATTTTCTCAATTTCCATAGTGAAATTTTCATT TTTTCAATAACATTAATCCTCACGGCCAACAGTCGTGAGACTAATCTCTCACCCTACGGTTAGCGCACTAAACGGTAGGA GGCTGACTAATGAGTTTTTTCTATCATTGACATAATTTTTCATTATTAAATTAATTTACATGAAAATTTTAAATTTACTT TTTTATACCCTTCAATGAGGCAATTATAAGGAAAAGTTAATCCGTGACAAATGGGTTACCACCTTTACATGCAGTTCATT CCTCTTCATATATTTCTGTGTAAGTTTTTTTTTGTACTGTAACTATTTCTCTTTAAATAGTTAAATTGGTGACAGATGCT CTGCTAATTAGTTATAAATAAATGTTTAGACACCACCATAACGGAAGATGGGAAGCTCGAATTGGCAGGGTCTCGGGCAA CAAATATCTATACCTTGGAACTTACGGTAGTTAATTCATTTCCTATATGATACATTTATTGCTATATAGTATATACTGTA TGTTAGTACTAGTACTAGTACTAATTAAGTGCATGCATGGTAGCTTCATTAATTGTTCTTATTGCTCATAATGTCAAGAT CTTTCAAAAACATACATTAACATGTTTTTTTAGTCATGATCTCCCCTCGATAATAAATGAATAATTTTACTGTAAATTCT GATTAAAATTTTGGAAATTGCATTTACCTCCCGTGAAATTAACCGTTATTGCACTTAGTTCTCATTTATTTTACAAAATG CATTGAGCTCCCCTATTTCATACTATATCATTAGAATAATAAAGATATGTTCGGTGTTATAATAATATATTTAAGGGGAG GTCGATGCAATAATGATAAGTTTTATAGGAGATTTATGTAATGTTTCGATAAAATAAAAGTTGTGTCTTGTTTTTTTTTT TGAAGCTGTGATTAGTGTCTTGTTAATTGTTATAAATAATACAAGAAGGATCGAGTTGTGTAAAAAGGTAAATGCAATTG GTCCTAATTTTTTTTCCACATCTCAATTTTTTAATTTCCATTATGAAACTAGCCAAGAAAAGTCATTATCAAATGCATTT TATGTGCAACACGCTTAGTTTTCTTAGACAAGAGTATGTGGCATCATCATATTTGGATGCATTTATAGGCTTTATCTATA TCCTGATGGCAAACTGGAGGACAAAGTCATAACATGTCACATTTTGCAACTATTTGAACATTTTTTAGCATGTGCATGTG TTTGTATATTATGGGTCGTTATATTATTATGGTAATCCTAATCAGCGTATAATAAAACATGCCAGAGAAATGTTTATGTC AGCTCCCTAATCAAACAAATTAAATAATCAAATAAATTTTAAACGTGGATTGGAGATAAAAAATTAGATAGAGATTAGGG TGTAGACTATTGGAAAGAGATATAAAGAGATAAAAAATAAGTGATAAATGAAATACATAATGTGAAGTGATCGGAAAAAA ACCATAAGAAAAAATATCCAGATGTGCATACACTGTATAGTAGTTTATGAATTATTAATGTTCCAAGGCAATTGATTAAT AGATGACGCTAGCACCTGAAAGTTTTAAAATTCATTTGACCATACCTTCCAACAAATAAGTACCTACTTCATATCTACCT TCAAAAAAATGAACCTACTTCTTATGACTAAGGTCCCACGGACCAAAATCAAAATAGCTGGAAAATTTGAAGTTCAAAAT ATGCAATCAAATATAGTTAGTTGTGATATTAGCTGCCAAACTTCAACCGCTTAGTAAAGCTATTTAATAGAAGCTCTTAT ATTATGTGCACATACATTATTTTGGCCCACACAAAATCAACACACGTTAGTAGGGTTTGAATCACCATAAAATTTAATGG TGATTAAAAACTGTCACTAATATATGTGTCGATTGTTTTGTTGGTCAAAAGTGTATATACTGACAACATTTTTGATTTAA TAGTGATGCCATTCGATTTTAGTCTTTTGATTCAAACAAATTAAACCCATAAAGAAATGTGCATCCTAATTAATTAGGTA TCATCATTAATTTTGATTTAGCTTACTGTATATGTGTATTTATGGTGTCCTGGAACAGCTACACAAGAAGAAGCAGCCAT AGCATATGACAGGGCAGCCATAAAGTATCGAGGACTTAATGCCATTACAAACTTCGACCTCAGCCGTTACATCAAATTGT TACGTCCTCAAACTCAAGACAGCAACAACCATCAAGACCAGACTAGCAATCAAGAACTCGAGGTAGAGTTTGTTTCCGAT GAGCTTGGCTCAACTACGGGTGAGACCGCACAAGATGATGCGGTCTCAACATCTTCAACAATTGGCCTTCTCTTACAACC GTTCAAATTCAAAGAAATGCTAGAAAAGACTTCTTCAGCTTTAGCACCAGTAGAGTCAACGACCCTTCCTCGACGAACAT TTCCTGAAGATATTCAAACAATATTTGAAAATGAAGATTCAAGTATCTACACTGAAAATGATGACATCATATTCGGTGAC TTGAGCTCAATTGCTGCCCCAATTTTTCATTTCGAGCTTGATACTTAGAAGAGGGAACTTCCAGCCTATATTTATGAACA ATGTTTTATCAATTACGTTAATTTTCAAAATGTCATCAACCAAAAAAGATGACTAGGAAATTAGGGTATGAGTAACGATT AAGCGAGTGAAAGATTTTTTTTCAAAAGAGTAATATTTTTTAATGAACATTTATATGAGACGGACAAAAGGAATATGCCA ATTTTATTTAACTTTCATATATACTATTCATCTCTTACAATTGTGATGGAATAAGATAGCAGTGAATAATGACCTTTGAC AATTTAGTTTTATTATGCTTTGTTTCAACCATATATTTCTAGTTCACTCTTAATTTTTTTAATGCAAATTATGAACTGAT CATCATCTCTTAAAAGCATGCTAATTTTACATATGTAAGTAACAATTCAAATATTCAATCCCCATAGTCAAAATTGTTAG ATTTCATTTCATGATTAATTCTAACTCCAAAATTCGTATTTTTTTAGAATAAAACTGCAAATCATAGCTTCCTATATGAC ATAACAACAATTACTATGTAAATTTTGAGCAAAGTTTCACGTACGGCAATTCAATATTGCAG
CDS sequence (LotjaGi3g1v0346300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGACAGTCAAAAGAAGAATACATTGGATCCTTAAGAAGAAGAAGCAGTGGGTTCTCTCGAGGAGTCTCAAAATA CAGAGGAGTTGCAAGACACCACCATAACGGAAGATGGGAAGCTCGAATTGGCAGGGTCTCGGGCAACAAATATCTATACC TTGGAACTTACGCTACACAAGAAGAAGCAGCCATAGCATATGACAGGGCAGCCATAAAGTATCGAGGACTTAATGCCATT ACAAACTTCGACCTCAGCCGTTACATCAAATTGTTACGTCCTCAAACTCAAGACAGCAACAACCATCAAGACCAGACTAG CAATCAAGAACTCGAGGTAGAGTTTGTTTCCGATGAGCTTGGCTCAACTACGGGTGAGACCGCACAAGATGATGCGGTCT CAACATCTTCAACAATTGGCCTTCTCTTACAACCGTTCAAATTCAAAGAAATGCTAGAAAAGACTTCTTCAGCTTTAGCA CCAGTAGAGTCAACGACCCTTCCTCGACGAACATTTCCTGAAGATATTCAAACAATATTTGAAAATGAAGATTCAAGTAT CTACACTGAAAATGATGACATCATATTCGGTGACTTGAGCTCAATTGCTGCCCCAATTTTTCATTTCGAGCTTGATACTT AG
Protein sequence (LotjaGi3g1v0346300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGQSKEEYIGSLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVSGNKYLYLGTYATQEEAAIAYDRAAIKYRGLNAI TNFDLSRYIKLLRPQTQDSNNHQDQTSNQELEVEFVSDELGSTTGETAQDDAVSTSSTIGLLLQPFKFKEMLEKTSSALA PVESTTLPRRTFPEDIQTIFENEDSSIYTENDDIIFGDLSSIAAPIFHFELDT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 212 | 212 | 3.7E-79 | – | |
| PANTHER | 1 | 212 | 212 | 3.7E-79 | – | |
| SUPERFAMILY | 25 | 86 | 62 | 2.94E-18 | ||
| Gene3D | 25 | 86 | 62 | 8.6E-21 | ||
| CDD | 25 | 86 | 62 | 5.14073E-27 | ||
| Pfam | 25 | 76 | 52 | 3.9E-12 | ||
| SMART | 26 | 90 | 65 | 9.4E-27 | ||
| ProSiteProfiles | 26 | 84 | 59 | 18.057 | ||
| PRINTS | 27 | 38 | 12 | 5.8E-5 | ||
| PRINTS | 66 | 86 | 21 | 5.8E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0346300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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