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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0346300 |
| Transcript ID | LotjaGi3g1v0346300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP2-like ethylene-responsive transcription factor family; TAIR: AT1G16060.1 ARIA-interacting double AP2 domain protein; Swiss-Prot: sp|Q94AN4|AP2L1_ARATH AP2-like ethylene-responsive transcription factor At1g16060; TrEMBL-Plants: tr|U5GNH0|U5GNH0_POPTR Uncharacterized protein; Found in the gene: LotjaGi3g1v0346300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72403148..72408096) extracted from Lotus japonicus Gifu genome v1.2.
GATAAATATGGTCTAAAAGTTCCAAACCACTTGGATAGTTGGATTGATACACACCCCCAATAAACACCACCTTTTATTTT CCCTTGCCGTCCATAATTTTTTCCCATCTTCAAATCTTTCTACTCAACTACCAACTGCATCACAACATGAACGAGAAAAA GGAGAAAGAAAATAAAATCTTACTATTGAAATATTGAAAGATGAAGAGTGAGAGAAGGAGAGAAATAAAGAATTAGACCT ACTTTTTCACTCCTCACTGCACTATTTCTATTAATTAATTAATGCCTCCGTTCTTATTGGATGACTCAGTCATATTTATA TAACAACTCTGATTCCCCTTCACTCTTATGCGCATGTAGTGCAGTGGTCCTCTCTGATCTTGTGAGCTTTCATGGCGAAG AAATCGCAGAAAAGCCTCAAGAACAACACTGCTTCCACTAACAACAGAAGAAGTAAGAATAAGACACCAAAACCAGTGAA ACGGACACGCAAAACCACCTCAAGAGACTCACCTCCACAGCGAAGCTCAATCTTCCGGGGTGTCACAAGGTGAGATATAA TATCAATTCACATCTATATGTAGATCTTCTATTTTCCTCTGTTTTTCTCTGTTTCATACTATTATATATTTTGAGATGGG TGATTATGCATGTGGTATTTATTAGACATCGATGGACTGGTCGCTATGAGGCTCATTTATGGGATAAGAATTGCTGGAAT GAATCACAGACCAAGAAAGGAAGACAAGGTTCTTATTTAATTAATTAAGTTTCTCTTTTCATATTTCTAGCTTAATTTCA TGATCTCTTTCACTTAATTATTTGATTTATTGTCATCTTACATATGTTGTATTGGTTGGTGATGGCAATGGAAAACAACT TGCTACAGTATATCTAGGTATGATTTGAATTTTAGTTTATGTAACAGTAATCATTCACAAAAACCTTCATCTATAAATGT GTTTTTTTTTATTCTTAGTAATTTTTCTACTTAATTTGTTAATTTTGAGAGTTGAAGTTCCTTGTGAATGGGGGCGATTT AATGAGTGAAAAGTTGGGTTTGATTTGTTAGGGGCATATGACAATGAAGAAGACGCAGCACGTGCCTATGACTTGGCAGC ATTGAAGTACTGGGGCCAACACACCATTCTCAACTTTCCAGTATATATCTCTTACCCTTTACTCAAATCATGATTTGGTA AAAAAAAATATATTCAGAACTAGATATGATGAGTTCATTATATAAATATTTTTGGTTATAGTTATCAAATTATCCAGAGG AGCTCAAGGAAATGGAGGGACAGTCAAAAGAAGAATACATTGGATCCTTAAGAAGGTTTAGTTGTTAAATCCTTAATATT AACCTTTTATTTGTTTCTTTGGAGCTATTAATGTCTTTTTCTCAGGGTTTATGTGACTTCATAGAATCAATCTTCATTCT TCAATATGCAGAAGAAGCAGTGGGTTCTCTCGAGGAGTCTCAAAATACAGAGGAGTTGCAAGGTACAGGGGATTTATTGC AAAATGCAATATTCTGTGACATTTGAATATTATGATCATTTCCACGCTACTACTTATCAAAAGGGGATGAATCTGTTCTT TCAATAAAATAAATCAATGATTGTTTTGTTGAAGTTTGAAAGTGGGACACACACAACATACATGTAAAATAATTATTTTT TTTAAAGAATGTGATAATTTAATTAAAGTGGAGTTGATGGAATAGAAAGCTAGGTTAGTAGTCTTGTTATGTTTATGGTT TTCATTTTGGACAAAACTTAAGGACACTTTTTTAGATGCAGTTTTTACTGTACTTCAAATACAACATGAGATGTATTTAA ATTTTGCATACCCAAGAACTTTAACTAGAGTTTACTGTTCTTTCAAACCTGTGATATCCACAAATTCGGTTATTGATGAA GAACAGCAGAACATTGGTTGAGGTTCATTTATTTCACATTGGAAGCTTTGACTCAAAGATTTCATATAAATTATCCTAAT TTTTGTTGTCTCTAGTTCAATTTTAATAGTTTAATTCCCGCAAAATTTGAGGTTACTATAATTATTTTAAATAAAATTTT AATTATTTATTCAAATGAAGGGGATTTTTTTATAAGCAAATGAAGGGGATTTATAATTTTCTCAATTTCCATAGTGAAAT TTTCATTTTTTCAATAACATTAATCCTCACGGCCAACAGTCGTGAGACTAATCTCTCACCCTACGGTTAGCGCACTAAAC GGTAGGAGGCTGACTAATGAGTTTTTTCTATCATTGACATAATTTTTCATTATTAAATTAATTTACATGAAAATTTTAAA TTTACTTTTTTATACCCTTCAATGAGGCAATTATAAGGAAAAGTTAATCCGTGACAAATGGGTTACCACCTTTACATGCA GTTCATTCCTCTTCATATATTTCTGTGTAAGTTTTTTTTTGTACTGTAACTATTTCTCTTTAAATAGTTAAATTGGTGAC AGATGCTCTGCTAATTAGTTATAAATAAATGTTTAGACACCACCATAACGGAAGATGGGAAGCTCGAATTGGCAGGGTCT CGGGCAACAAATATCTATACCTTGGAACTTACGGTAGTTAATTCATTTCCTATATGATACATTTATTGCTATATAGTATA TACTGTATGTTAGTACTAGTACTAGTACTAATTAAGTGCATGCATGGTAGCTTCATTAATTGTTCTTATTGCTCATAATG TCAAGATCTTTCAAAAACATACATTAACATGTTTTTTTAGTCATGATCTCCCCTCGATAATAAATGAATAATTTTACTGT AAATTCTGATTAAAATTTTGGAAATTGCATTTACCTCCCGTGAAATTAACCGTTATTGCACTTAGTTCTCATTTATTTTA CAAAATGCATTGAGCTCCCCTATTTCATACTATATCATTAGAATAATAAAGATATGTTCGGTGTTATAATAATATATTTA AGGGGAGGTCGATGCAATAATGATAAGTTTTATAGGAGATTTATGTAATGTTTCGATAAAATAAAAGTTGTGTCTTGTTT TTTTTTTTGAAGCTGTGATTAGTGTCTTGTTAATTGTTATAAATAATACAAGAAGGATCGAGTTGTGTAAAAAGGTAAAT GCAATTGGTCCTAATTTTTTTTCCACATCTCAATTTTTTAATTTCCATTATGAAACTAGCCAAGAAAAGTCATTATCAAA TGCATTTTATGTGCAACACGCTTAGTTTTCTTAGACAAGAGTATGTGGCATCATCATATTTGGATGCATTTATAGGCTTT ATCTATATCCTGATGGCAAACTGGAGGACAAAGTCATAACATGTCACATTTTGCAACTATTTGAACATTTTTTAGCATGT GCATGTGTTTGTATATTATGGGTCGTTATATTATTATGGTAATCCTAATCAGCGTATAATAAAACATGCCAGAGAAATGT TTATGTCAGCTCCCTAATCAAACAAATTAAATAATCAAATAAATTTTAAACGTGGATTGGAGATAAAAAATTAGATAGAG ATTAGGGTGTAGACTATTGGAAAGAGATATAAAGAGATAAAAAATAAGTGATAAATGAAATACATAATGTGAAGTGATCG GAAAAAAACCATAAGAAAAAATATCCAGATGTGCATACACTGTATAGTAGTTTATGAATTATTAATGTTCCAAGGCAATT GATTAATAGATGACGCTAGCACCTGAAAGTTTTAAAATTCATTTGACCATACCTTCCAACAAATAAGTACCTACTTCATA TCTACCTTCAAAAAAATGAACCTACTTCTTATGACTAAGGTCCCACGGACCAAAATCAAAATAGCTGGAAAATTTGAAGT TCAAAATATGCAATCAAATATAGTTAGTTGTGATATTAGCTGCCAAACTTCAACCGCTTAGTAAAGCTATTTAATAGAAG CTCTTATATTATGTGCACATACATTATTTTGGCCCACACAAAATCAACACACGTTAGTAGGGTTTGAATCACCATAAAAT TTAATGGTGATTAAAAACTGTCACTAATATATGTGTCGATTGTTTTGTTGGTCAAAAGTGTATATACTGACAACATTTTT GATTTAATAGTGATGCCATTCGATTTTAGTCTTTTGATTCAAACAAATTAAACCCATAAAGAAATGTGCATCCTAATTAA TTAGGTATCATCATTAATTTTGATTTAGCTTACTGTATATGTGTATTTATGGTGTCCTGGAACAGCTACACAAGAAGAAG CAGCCATAGCATATGACAGGGCAGCCATAAAGTATCGAGGACTTAATGCCATTACAAACTTCGACCTCAGCCGTTACATC AAATTGTTACGTCCTCAAACTCAAGACAGCAACAACCATCAAGACCAGACTAGCAATCAAGAACTCGAGGTAGAGTTTGT TTCCGATGAGCTTGGCTCAACTACGGGTGAGACCGCACAAGATGATGCGGTCTCAACATCTTCAACAATTGGCCTTCTCT TACAACCGTTCAAATTCAAAGAAATGCTAGAAAAGACTTCTTCAGCTTTAGCACCAGTAGAGTCAACGACCCTTCCTCGA CGAACATTTCCTGAAGATATTCAAACAATATTTGAAAATGAAGATTCAAGTATCTACACTGAAAATGATGACATCATATT CGGTGACTTGAGCTCAATTGCTGCCCCAATTTTTCATTTCGAGCTTGATACTTAGAAGAGGGAACTTCCAGCCTATATTT ATGAACAATGTTTTATCAATTACGTTAATTTTCAAAATGTCATCAACCAAAAAAGATGACTAGGAAATTAGGGTATGAGT AACGATTAAGCGAGTGAAAGATTTTTTTTCAAAAGAGTAATATTTTTTAATGAACATTTATATGAGACGGACAAAAGGAA TATGCCAATTTTATTTAACTTTCATATATACTATTCATCTCTTACAATTGTGATGGAATAAGATAGCAG
CDS sequence (LotjaGi3g1v0346300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAGAAATCGCAGAAAAGCCTCAAGAACAACACTGCTTCCACTAACAACAGAAGAAGTAAGAATAAGACACCAAA ACCAGTGAAACGGACACGCAAAACCACCTCAAGAGACTCACCTCCACAGCGAAGCTCAATCTTCCGGGGTGTCACAAGAC ATCGATGGACTGGTCGCTATGAGGCTCATTTATGGGATAAGAATTGCTGGAATGAATCACAGACCAAGAAAGGAAGACAA GTATATCTAGGGGCATATGACAATGAAGAAGACGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAACA CACCATTCTCAACTTTCCATTATCAAATTATCCAGAGGAGCTCAAGGAAATGGAGGGACAGTCAAAAGAAGAATACATTG GATCCTTAAGAAGAAGAAGCAGTGGGTTCTCTCGAGGAGTCTCAAAATACAGAGGAGTTGCAAGACACCACCATAACGGA AGATGGGAAGCTCGAATTGGCAGGGTCTCGGGCAACAAATATCTATACCTTGGAACTTACGCTACACAAGAAGAAGCAGC CATAGCATATGACAGGGCAGCCATAAAGTATCGAGGACTTAATGCCATTACAAACTTCGACCTCAGCCGTTACATCAAAT TGTTACGTCCTCAAACTCAAGACAGCAACAACCATCAAGACCAGACTAGCAATCAAGAACTCGAGGTAGAGTTTGTTTCC GATGAGCTTGGCTCAACTACGGGTGAGACCGCACAAGATGATGCGGTCTCAACATCTTCAACAATTGGCCTTCTCTTACA ACCGTTCAAATTCAAAGAAATGCTAGAAAAGACTTCTTCAGCTTTAGCACCAGTAGAGTCAACGACCCTTCCTCGACGAA CATTTCCTGAAGATATTCAAACAATATTTGAAAATGAAGATTCAAGTATCTACACTGAAAATGATGACATCATATTCGGT GACTTGAGCTCAATTGCTGCCCCAATTTTTCATTTCGAGCTTGATACTTAG
Protein sequence (LotjaGi3g1v0346300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKKSQKSLKNNTASTNNRRSKNKTPKPVKRTRKTTSRDSPPQRSSIFRGVTRHRWTGRYEAHLWDKNCWNESQTKKGRQ VYLGAYDNEEDAARAYDLAALKYWGQHTILNFPLSNYPEELKEMEGQSKEEYIGSLRRRSSGFSRGVSKYRGVARHHHNG RWEARIGRVSGNKYLYLGTYATQEEAAIAYDRAAIKYRGLNAITNFDLSRYIKLLRPQTQDSNNHQDQTSNQELEVEFVS DELGSTTGETAQDDAVSTSSTIGLLLQPFKFKEMLEKTSSALAPVESTTLPRRTFPEDIQTIFENEDSSIYTENDDIIFG DLSSIAAPIFHFELDT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 51 | 51 | - | – | |
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 4 | 335 | 332 | 1.6E-152 | – | |
| PANTHER | 4 | 335 | 332 | 1.6E-152 | – | |
| SUPERFAMILY | 46 | 115 | 70 | 1.96E-17 | ||
| CDD | 46 | 115 | 70 | 4.42063E-20 | ||
| SMART | 47 | 119 | 73 | 1.0E-27 | ||
| Pfam | 47 | 105 | 59 | 1.0E-11 | ||
| Gene3D | 47 | 115 | 69 | 1.6E-21 | ||
| ProSiteProfiles | 47 | 113 | 67 | 19.717 | ||
| PRINTS | 48 | 59 | 12 | 6.6E-6 | ||
| Pfam | 148 | 199 | 52 | 8.3E-12 | ||
| SUPERFAMILY | 148 | 209 | 62 | 6.54E-18 | ||
| Gene3D | 148 | 209 | 62 | 1.9E-20 | ||
| CDD | 148 | 209 | 62 | 1.07591E-24 | ||
| SMART | 149 | 213 | 65 | 9.4E-27 | ||
| ProSiteProfiles | 149 | 207 | 59 | 18.057 | ||
| PRINTS | 189 | 209 | 21 | 6.6E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0346300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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