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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0348300 |
| Transcript ID | LotjaGi3g1v0348300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT5G07610.1 F-box family protein; Swiss-Prot: sp|Q9FLS0|FB253_ARATH F-box protein At5g07610; TrEMBL-Plants: tr|G7JEH0|G7JEH0_MEDTR F-box protein; Found in the gene: LotjaGi3g1v0348300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72593234..72595281) extracted from Lotus japonicus Gifu genome v1.2.
TCAAAACGTTGATGTCTATTCCTATTAATTTGGGTTCTTTGAATCGAAAGAAACAGAGCAACTAACTGCCAAAGTTTAGT TTGTGTTTCTCTTCTCTCTTAAAAACGATCCAGCCACTTGTGTTTGTGTTTTTGATTGTTTCTCTCTGTACTGTATCTGT ATGGCTGATATCTCATCTGGAAAACCCTCACTCAGCAACATCAACCATTTTTCAGATGATTTGTTAGTAGAAATTTTCAT CCGATTGCCATTCAGATCCATCGCTGGATGCAAATGCACCTCCAAGCGTTGGTTAGATTTGATTTCATCCCCAATTTTCA TACAACAATTTATCACTCGTCAGAACAATCTCTTCAATGCTTTCTTGATCTTCCTCACACCCCATGAGCTTATGCTAGGT TTCATCACCCCAGATGATGATCCACCTCTCATCCCAGATTTGGGTTTGTCCCCAGACATCCTCGTCAAAGGAAACGTCTG TGGTTGTTCCAATGGTTTGCTATTGTGCTGTAACACCAGATACACAACTGGTAATGGCTATTCCATTTACAATCCGCTTA CCAAACAATGCACCCAGATAGCCCCATCTCCTGCAAACCAGATTGGGAATCTGTACGCGGTAGGGTTTGTTTGTGATCCA TTTTTCGGGCTTTCGCGAGAAGTAGTAGCTGCAGCGGCGGAATCGTTGGTTCAGGTTCAACGCGATCGCAGTTTTCGCGT GGTGATTATTCGGTCTTTCATTAGAAGATCGTTCGAGTTTGAAGTGTCGGTTTTCGAGTCGGAGACCGGGACGTGGGAGC AGACGGTGGTGACTTGCCCGGATGGTTTTGCTTTTGCTCCTCATTGGCTTCTCAGTGTTGAGTATGAAGGGTTCCTTTAT TTTATGGGGAGGACTAGCATTTTTGTTTTTGATCCTTATAGCAAAGAGAGTGATGTTCTTGATTATCCAGACGATGCTGA TTCGATGAATATAATGAGTTTCGGGTTTCTTGGAACCTGTTGTGGGAGACTGAGGATTGCTGATATTGGCCTAAATTATT TGACTGTGTGGGAACTGATAGAAAATGATTACTGGGATTTGGTGCACACTACCAATCTATCAACAAAACTCCCTGATAAG TTTTGTAATAACTACTATAAGCGAGTAGCGGGTTTCCATCCTTATGATGGGGACATTGTGTATCTGCATTCTTATGCTGA TGGGGTTTTTGTTGCCAACCTGGGGACTGATGAATTTGAGGCTATTCCTGGTTATGAGAAATCTGATATAAGTCCCTTTC AACTAGTGTTTCCATTGTAGCTGCCATCCACAGAACTGACAGAAGAATAAGATAGTTGGATGAAAACTGCAGCACCTGTT TACCTTAATTAGGCTTCTTAGTTATTTTCACCTCATTTTCAGTTATGATCATGATATGATTGTAGCATGCTTTTATTTAT TTATGATGATGTAGCCTCAATGTAATTGTCATTCAATAGATCAAATATATGCACAACTCATGTTATACTTCAAGATAGAT AGATTTGCTGAAGTTCTTTCAGAACAAATTTGTGGTTTTGTTGCAAGTTTGATCAACCAGTTACAGATATGCAGCTGGAA GAAATGACAATTAACAAGAGAAAAAGAACAAATTTGGATATCAGAAGTGCATAAAAAAAGGCTGAGGACAATTATTTGAC GGCTCAGAAGGCACACACATTTTAAGATTTTTGAGTAGTATTAAAACTGTTATTGTGCTTTTCTTACATGTTAAAGAATC CTAAGCTTTCAGCAAAAGAATAAACAAAAAAACTTTGAAGCGTGTTTGGAAGATTTCGAGATACACGGTTACTAGATGTA GGGGCCTACCGGAGAACTTTGGCTATCATAAGAAAAGAAAAGAAATGATGAAAGTTTTGACAAAAATGAAAAGGAAGAAA CGTGCTGCAGACAAAGGAGTGCTGAACTAAAATAACAATGCAGATCAATATTTTAGAGAGATTTTGATTTTGATGGAATT CAATGAACGAAGAAAATACAAATATTAAAATGTTTCACAGATAAGAAG
CDS sequence (LotjaGi3g1v0348300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATATCTCATCTGGAAAACCCTCACTCAGCAACATCAACCATTTTTCAGATGATTTGTTAGTAGAAATTTTCAT CCGATTGCCATTCAGATCCATCGCTGGATGCAAATGCACCTCCAAGCGTTGGTTAGATTTGATTTCATCCCCAATTTTCA TACAACAATTTATCACTCGTCAGAACAATCTCTTCAATGCTTTCTTGATCTTCCTCACACCCCATGAGCTTATGCTAGGT TTCATCACCCCAGATGATGATCCACCTCTCATCCCAGATTTGGGTTTGTCCCCAGACATCCTCGTCAAAGGAAACGTCTG TGGTTGTTCCAATGGTTTGCTATTGTGCTGTAACACCAGATACACAACTGGTAATGGCTATTCCATTTACAATCCGCTTA CCAAACAATGCACCCAGATAGCCCCATCTCCTGCAAACCAGATTGGGAATCTGTACGCGGTAGGGTTTGTTTGTGATCCA TTTTTCGGGCTTTCGCGAGAAGTAGTAGCTGCAGCGGCGGAATCGTTGGTTCAGGTTCAACGCGATCGCAGTTTTCGCGT GGTGATTATTCGGTCTTTCATTAGAAGATCGTTCGAGTTTGAAGTGTCGGTTTTCGAGTCGGAGACCGGGACGTGGGAGC AGACGGTGGTGACTTGCCCGGATGGTTTTGCTTTTGCTCCTCATTGGCTTCTCAGTGTTGAGTATGAAGGGTTCCTTTAT TTTATGGGGAGGACTAGCATTTTTGTTTTTGATCCTTATAGCAAAGAGAGTGATGTTCTTGATTATCCAGACGATGCTGA TTCGATGAATATAATGAGTTTCGGGTTTCTTGGAACCTGTTGTGGGAGACTGAGGATTGCTGATATTGGCCTAAATTATT TGACTGTGTGGGAACTGATAGAAAATGATTACTGGGATTTGGTGCACACTACCAATCTATCAACAAAACTCCCTGATAAG TTTTGTAATAACTACTATAAGCGAGTAGCGGGTTTCCATCCTTATGATGGGGACATTGTGTATCTGCATTCTTATGCTGA TGGGGTTTTTGTTGCCAACCTGGGGACTGATGAATTTGAGGCTATTCCTGGTTATGAGAAATCTGATATAAGTCCCTTTC AACTAGTGTTTCCATTGTAG
Protein sequence (LotjaGi3g1v0348300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADISSGKPSLSNINHFSDDLLVEIFIRLPFRSIAGCKCTSKRWLDLISSPIFIQQFITRQNNLFNAFLIFLTPHELMLG FITPDDDPPLIPDLGLSPDILVKGNVCGCSNGLLLCCNTRYTTGNGYSIYNPLTKQCTQIAPSPANQIGNLYAVGFVCDP FFGLSREVVAAAAESLVQVQRDRSFRVVIIRSFIRRSFEFEVSVFESETGTWEQTVVTCPDGFAFAPHWLLSVEYEGFLY FMGRTSIFVFDPYSKESDVLDYPDDADSMNIMSFGFLGTCCGRLRIADIGLNYLTVWELIENDYWDLVHTTNLSTKLPDK FCNNYYKRVAGFHPYDGDIVYLHSYADGVFVANLGTDEFEAIPGYEKSDISPFQLVFPL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 78 | 75 | 3.3E-6 | – | |
| PANTHER | 10 | 375 | 366 | 1.4E-146 | – | |
| PANTHER | 10 | 375 | 366 | 1.4E-146 | – | |
| SUPERFAMILY | 12 | 65 | 54 | 7.46E-12 | ||
| Pfam | 14 | 58 | 45 | 1.2E-7 | ||
| SUPERFAMILY | 116 | 372 | 257 | 7.98E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0348300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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