Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0349800 |
Transcript ID | LotjaGi3g1v0349800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | WRKY transcription factor; TAIR: AT1G80840.1 WRKY DNA-binding protein 40; Swiss-Prot: sp|Q9SAH7|WRK40_ARATH Probable WRKY transcription factor 40; TrEMBL-Plants: tr|I3S9X4|I3S9X4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0349800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72765478..72768346) extracted from Lotus japonicus Gifu genome v1.2.
GTGTATTTCCCATGTGTCTCCTTCCACTCAGTTTCCTTGCTCAAGTTGAGTTCGTCAAGTGCTACCTAGCGACCCCTATA TATTATATATATCCTTCATCTTGGTTGCTTGACCCGAATATCTAAAACAATCTTTCCTGCTTTTCTCTTAGCTCTATCTA TTCATACTCTTCATTCAGGTTTAGCTTCATCCATAATTTAGCAACAGCTTTTGGATAATTTGTTTGGCAGCTATGGACTG TTCAGCATGGATTAACACTTCATTGGATCTCAACATTCATTCCCACAAAGTTCATCAACAAGTTGTTCCTGTAAGTATAA AAGTCAAATAATATATCATTATTGCTCTTATGTGAATGCTTCCTTAAAATATTGTCTGACTGATATTGTTGTGTGTTGAT TTCAGAAGAAGGAGGTGGAAAGCAAGCTTTTCTCTTTGGGGATGACTGAGTTTTCTGTTGAAGAAGAGGTTAGTTTAGTT TAGCCAATTGTTTTAATTCATTAATCATTTTTCTCTGCTTTCCTTTCTTTGACATCATTAGTTAGACTCTAGAACAAACA ATTTAGTGCATCTTTAGAAATCTTCTATAATTGATTCTAAAGTCAAATTCAATTCTCAATTGAAACTTTTGTAAGTAGCT TCTGTGTGTCGGAATTGATTCTGAGAAAAGAGAATGTTATACAAGACTCCAAATGTGAAAGTACACTTTTCATTGATGTT GCACCCTGAGCCTTAGACACCTTTTGCTTGGATGATTCTCTTGTTCATTAGTCCATTATAGAATAGCCCTTTCGGCTATA ACTCTGTGAATGATTCTAAAATGTGCTTTTGCTTCTAATTTCAGTCAACCAATGAGTTGGAGGAGGAGCTGAAGCGGGTG ACAGCAGAAAACAAAAAATTGGTTGAAATGCTCTCAGTGGTGTGTGAGAACTACAACACTTTGAGAAGCCAATTGATGGA ATACATGAGCAGAAATCCTGAGAAGGAGCTCAGCCCATCATCAAAGAAAAGGAAGTCTGAGAGCAGCAATAACAACAGTG ATCTGGTGGGGGTTAACAATGGAAACTCTGAGAGCAGCTCTACTGATGAAGATTCTTTCAAGAAACCGAGGGAAGAAACC ATCAAAGCAAAGATTTCAAGAGCTTATGTCAGGACTGAAGCAACTGATACAGGATTTGTAAGGCTCTTTACTCTCTTATA TAGCAAGTCCCATTTGGAAGAGTTTATTTTGGTTTATCTTATAGTATAAGCACTTTTATAAGTGTTTGGGAGAGCTTATG TGAAGTTTATGACCAACCTATAAGCTGTTTCCAGCTAATTTTCATAAGCTCCCCAGATTAGCTTCTGAATAAGCCCTTAT ACTACTCACCTATAATCTATTTTGAGCTTATTTCAATGCGTTTATCAAATTAGCTTATGATTAAGTGTTTATAGGTAACT GTTTTATAGCAATGTAGCTCAGAGTCAAACTATTTAGGTAACTGTTTGACATGTTTTTCATTGTATGTGCTTTTAGGTTG TGAAAGATGGATACCAATGGAGGAAATATGGGCAAAAGGTGACCAGAGATAACCCTTGTCCAAGAGCATATTTCAAATGC TCTTTTGCTCCAAGCTGCCCTGTCAAAAAGAAGGTAAAGCTAAGTGCTAACATTGAATTAGGAACTGGTTACAGAAATAC CAGTGTTGAACTGAATCTCAAACTAACTTGGTTTTGCTCTTGCTTGGTTATTTATTCAGGTGCAAAGAAGTGTAGATGAT CAATCTGTCCTGGTTGCTACTTATGAAGGGGAGCACAATCATCCTCAACCTTCTCAAATGGAGGCAACATCAGGCTCCGG CCGCAATGTGAGCCTAGTAGGCTCCATGCCTTCTTCAAAGTCTCTCAGCTCTCCTGCTCCAGCAGTTGTAACTCTCGACT TGACAAAATCTCGGTGCAGCAATGATTCCAAGAATGCAGAACCCAGAAAAGATTCAGCTAAGTTACCACAGGTTTTGGTG GAACAGATGGCTACTTCTTTGACCACAGATCCTAATTTTAGAGCAGCACTTGTTGCAGCCATCTCAGGAAGGCTTTTGCA CCAGAATTGAATGGAAATTTGGTTGAGCTTAGCTAACTTAGTGTCAAACTGTTGAGTATTCCATAGAGTGGATCATTTTT TTTTAGAGCATAGGATCTCTATGTAAATACAACATGGAAGATTGGGACATAATTCTCACTTTGATCCTGGAAGTGGAAAT ATAGAGTGGATCAATGCGGATAGCATGATCAGTTCAGCCTGGTCGGCTCTTCATTTTGGCCAAAATATCTAGGATACCTC AAATCAGATATCTACACAAGTTCTTGCAAAATTCTCTGAAAGGAAAAAAAAAGAAAGATTCTTCAATGCAGTGCAGCTCT AGTGACACTACAATTTCTTATTGTTCATCTTCTTCAGCGCAGCCCTACTTCTCAATGTTCTAACTTCTAACACACAGACT TAGGCCCCAAGCTTTATCTTTTTCATTTTAGAAATTGTATTATGCATTAATCAAGTATTATTGATGATGAAGTTTACCTC ATCAAAACATAGAAGGAAAATAAAAAGCGATGTGCGTAATGAGTTTTCGATTCAAAGATTGATATTTTGTTGATTTGAGA AGCAAGTCCTAATGATTGAATTTGAAGTTATAGTTGATTGAGTTTTATACATGTATCTAAAGATCATATTACTCATGTAC ATGAAATTGATAGGTATGGAAATATTGAATCCAGATTCAGAATATGTATGGAGGACACTGTCACAAATCTGAAAAAGGTT GTTTACTGAAAGCAAATTCTCATCAATCTTCTGAGCTACAAACTGATGCAGTTCTGCGTTTCTCTATTG
CDS sequence (LotjaGi3g1v0349800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTGTTCAGCATGGATTAACACTTCATTGGATCTCAACATTCATTCCCACAAAGTTCATCAACAAGTTGTTCCTAA GAAGGAGGTGGAAAGCAAGCTTTTCTCTTTGGGGATGACTGAGTTTTCTGTTGAAGAAGAGTCAACCAATGAGTTGGAGG AGGAGCTGAAGCGGGTGACAGCAGAAAACAAAAAATTGGTTGAAATGCTCTCAGTGGTGTGTGAGAACTACAACACTTTG AGAAGCCAATTGATGGAATACATGAGCAGAAATCCTGAGAAGGAGCTCAGCCCATCATCAAAGAAAAGGAAGTCTGAGAG CAGCAATAACAACAGTGATCTGGTGGGGGTTAACAATGGAAACTCTGAGAGCAGCTCTACTGATGAAGATTCTTTCAAGA AACCGAGGGAAGAAACCATCAAAGCAAAGATTTCAAGAGCTTATGTCAGGACTGAAGCAACTGATACAGGATTTGTTGTG AAAGATGGATACCAATGGAGGAAATATGGGCAAAAGGTGACCAGAGATAACCCTTGTCCAAGAGCATATTTCAAATGCTC TTTTGCTCCAAGCTGCCCTGTCAAAAAGAAGGTGCAAAGAAGTGTAGATGATCAATCTGTCCTGGTTGCTACTTATGAAG GGGAGCACAATCATCCTCAACCTTCTCAAATGGAGGCAACATCAGGCTCCGGCCGCAATGTGAGCCTAGTAGGCTCCATG CCTTCTTCAAAGTCTCTCAGCTCTCCTGCTCCAGCAGTTGTAACTCTCGACTTGACAAAATCTCGGTGCAGCAATGATTC CAAGAATGCAGAACCCAGAAAAGATTCAGCTAAGTTACCACAGGTTTTGGTGGAACAGATGGCTACTTCTTTGACCACAG ATCCTAATTTTAGAGCAGCACTTGTTGCAGCCATCTCAGGAAGGCTTTTGCACCAGAATTGA
Protein sequence (LotjaGi3g1v0349800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDCSAWINTSLDLNIHSHKVHQQVVPKKEVESKLFSLGMTEFSVEEESTNELEEELKRVTAENKKLVEMLSVVCENYNTL RSQLMEYMSRNPEKELSPSSKKRKSESSNNNSDLVGVNNGNSESSSTDEDSFKKPREETIKAKISRAYVRTEATDTGFVV KDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPQPSQMEATSGSGRNVSLVGSM PSSKSLSSPAPAVVTLDLTKSRCSNDSKNAEPRKDSAKLPQVLVEQMATSLTTDPNFRAALVAAISGRLLHQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 7 | 312 | 306 | 7.1E-165 | – | |
PANTHER | 7 | 312 | 306 | 7.1E-165 | – | |
Coils | 42 | 69 | 28 | - | – | |
MobiDBLite | 89 | 137 | 49 | - | – | |
MobiDBLite | 109 | 126 | 18 | - | – | |
Gene3D | 137 | 222 | 86 | 4.7E-29 | ||
SUPERFAMILY | 158 | 221 | 64 | 9.81E-26 | ||
ProSiteProfiles | 159 | 221 | 63 | 26.303 | ||
SMART | 160 | 220 | 61 | 1.2E-34 | ||
Pfam | 161 | 219 | 59 | 1.4E-23 | ||
MobiDBLite | 213 | 233 | 21 | - | – | |
MobiDBLite | 216 | 233 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0349800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…