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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0351200 |
| Transcript ID | LotjaGi3g1v0351200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial glycoprotein family protein, putative; TAIR: AT1G15870.1 Mitochondrial glycoprotein family protein; Swiss-Prot: sp|Q8W487|YB95_ARATH Uncharacterized protein At2g39795, mitochondrial; TrEMBL-Plants: tr|I1KVJ8|I1KVJ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0351200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73018659..73020825) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTGATATTTTTAAAGTTTTGGATGTCTTGTTTCCTTTCCTTGTGTCTCTTGTTCTGGAATTTCATAAACCCTTCCC TCTAAACCCTGCCACTCCTTCTCCTTCGTTCTTCAATGGCGCGCCTGTTCCGTTCCCTCAGAAAAACCCTAACCCTAACC CCAACCCTAACCCAAACCCACCATCTTCATCATCACCCTCTTCAATCATGCATTTCCCCTCACCTGCACCGAAGAACTTA CATCTCAGACATGCGCAAATCAGCTTTTGAAGGAAACATTACGAGACTCCTCCGCAACGAGATTCAATACGAGCTTCAAT CCTCTCCTTCTGACAACGTAGGTTCCCCCCTTTTTCACTCTCATTTCACTGTTATCTTAATTTCCCCGTTTTCTTTCGTA TTTCGTAGCTGCGTGTGTAATGGGTTTTGATCTAGGAAAAAAGGGTAACAGGAATTTTCTTTGTTTGTTAGAGAATAATG GAAAAGGAAACAACTTTCTGATATCAGTGAGTGTTTTGCTCAGATTGTGATTTTCAAATTTAATTTATGGGAAAGAAAGA ACTATCATTTTTAGGTTATGCTAAAAATCTAGATTTAAAGCTCCAAAATACTTAGGCCCTGTTTGGGAGAGCTTATTTGA GCTTAACTGATAGCATAAGCGCTTGTGCAAGTGTTTGGGAGAGCTTATGCAAACAGACCATAAGCTGTTTTGAGCTTATT TTCATAAGCTACTCAGAATAGCTTATGAAAAAGAGCTTATGCTTATATATAGCTTATTTTCAATTTATTATAATAATTTT TTTAAAATAGCTTATGAATAAGCACTTATGTCATAAGTGCTTATGGTCATAAGCGCTTAATTAAGTTGTTTTCCCAAATG GGGCCTTAAGCTAAATTCAATACTGGATGTTTTGATGGGATTCAGTGCATCTGTATATGATGATATCTTGCTTTCTAAAA GGGTTGGTTAGTTTTAATTTTTAAATCAATGAGACTACAATCTTTTTTCATTTTAGGTTTTTTCCTGATTTCATTTGCAT TTAGCATCTTTGGATGAAATTTTCCAACTTGAGTTGGATTTGGTGTAGTTATACTTTTGGACATGAGTAATACTTAGGAG GCTATTCTTGATTTGTAGCCTAGCAACAAGTTTGGTTCCTTTGCGGTGGATGGTCGACCTGGTGAGCGATGGATTACACT GAGAAGACAATTTGCGAATGAAGATATTAAAGTTGAAGCCACCATGTTCGATGGAGCTGTTCCTGCTCCCCGTTCAAGTG GTGGTGTGGCTAATGCGGATGAAATGCAGCTGCACATTACCTTGATTGTCAGCATCTCTAAGGGAGATGGTGGTGTGCTG GAGATCACGTGCTCTGCTTGGCCAGACACTATAGAGATAAAAAGGCTGCTCACGCGTGCAAAGGAAAAGATGCCAGCTGA GCCCTATGCTGGTCCTGATTTCGAGTATGTTTACCCTCTCATTCCGTCTCCTGGTTGTTAGCTTATAAACTAGCTTGGGC GATGGATATAATCAGAATGGTGTTAATACCTATTTCTGTTGATTTTTGACAGGGATTTAGATGATGACTTGCAAGATAGC CTTTATGATTTCTTGGAGGTAAGGGGTGTAGATGATGAACTGGCCATTTTTTTGCATCAGTACATGAAACGCAAGGATAA ATCTGAGTTAGTAGGATGGATGGAGAGGGTTAAATCTTTCATTGAAAGGAAATAAAGGCATTAATATTTCAACGTTGTAG ATGATACAAGCTGTGAGTCGATATCTCATGTATTTTGTGACTGAAGTCTCAATATGAGGAGGTAGACTTTTTTTCGTTGT TGTTGATAATAACTGCTTTAGATTTATAGTTGGTATTGGCGGAAATCATATAAACATGATAGGTTTCCCCAAGAAAAAAC GGTGCTGTTAGGAAATAGCCTTATGTTTTTTGGATTTGACTCCTCCAAAGTGAGAGCCATTGATTTAGAAGTCATTATTT GAGTATGTGTTATGTGATCATATACTTACTTGCACATGACTAACAAATTATTGTGCTCTTTGAATATTCGTTAATTTCTC AATCTAACGGTTTGACATACTTCACAATTGAATGAGTTCAAATTCAAATGAAGAGGTGCATGCATACTTATGCAGGTTTT TCCTTCC
CDS sequence (LotjaGi3g1v0351200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCGCCTGTTCCGTTCCCTCAGAAAAACCCTAACCCTAACCCCAACCCTAACCCAAACCCACCATCTTCATCATCA CCCTCTTCAATCATGCATTTCCCCTCACCTGCACCGAAGAACTTACATCTCAGACATGCGCAAATCAGCTTTTGAAGGAA ACATTACGAGACTCCTCCGCAACGAGATTCAATACGAGCTTCAATCCTCTCCTTCTGACAACCCTAGCAACAAGTTTGGT TCCTTTGCGGTGGATGGTCGACCTGGTGAGCGATGGATTACACTGAGAAGACAATTTGCGAATGAAGATATTAAAGTTGA AGCCACCATGTTCGATGGAGCTGTTCCTGCTCCCCGTTCAAGTGGTGGTGTGGCTAATGCGGATGAAATGCAGCTGCACA TTACCTTGATTGTCAGCATCTCTAAGGGAGATGGTGGTGTGCTGGAGATCACGTGCTCTGCTTGGCCAGACACTATAGAG ATAAAAAGGCTGCTCACGCGTGCAAAGGAAAAGATGCCAGCTGAGCCCTATGCTGGTCCTGATTTCGAGGATTTAGATGA TGACTTGCAAGATAGCCTTTATGATTTCTTGGAGGTAAGGGGTGTAGATGATGAACTGGCCATTTTTTTGCATCAGTACA TGAAACGCAAGGATAAATCTGAGTTAGTAGGATGGATGGAGAGGGTTAAATCTTTCATTGAAAGGAAATAA
Protein sequence (LotjaGi3g1v0351200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARLFRSLRKTLTLTPTLTQTHHLHHHPLQSCISPHLHRRTYISDMRKSAFEGNITRLLRNEIQYELQSSPSDNPSNKFG SFAVDGRPGERWITLRRQFANEDIKVEATMFDGAVPAPRSSGGVANADEMQLHITLIVSISKGDGGVLEITCSAWPDTIE IKRLLTRAKEKMPAEPYAGPDFEDLDDDLQDSLYDFLEVRGVDDELAIFLHQYMKRKDKSELVGWMERVKSFIERK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 235 | 235 | 1.2E-81 | – | |
| PANTHER | 1 | 235 | 235 | 1.2E-81 | ||
| SUPERFAMILY | 49 | 234 | 186 | 2.62E-46 | ||
| Gene3D | 50 | 234 | 185 | 7.0E-48 | ||
| Pfam | 59 | 233 | 175 | 3.1E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Mitochondrial matrix | The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. |
Expression pattern of LotjaGi3g1v0351200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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