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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0351700 |
Transcript ID | LotjaGi3g1v0351700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ethylene-responsive transcription factor; TAIR: AT5G25190.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q94AW5|ERF03_ARATH Ethylene-responsive transcription factor ERF003; TrEMBL-Plants: tr|I3SNR7|I3SNR7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0351700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73063043..73064862) extracted from Lotus japonicus Gifu genome v1.2.
GCCATTTATAAATTGACACAAGACAAGGCCGCAAAAGGACCTCAGAATATAAATCTAAGCGAACTCCTTCTCCTTCACTT CACTGATCACTTCAGTCACCTTAATTTCCTCTTCGTTTCTCATTCTCAAACACACTTCACAAACACTCCTCATCCTCATC CTCATCATCATCATGGCTAGACCCCAACAACGCTATCGTGGTGTCCGCCAGAGACACTGGGGCTCTTGGGTCTCTGAAAT TCGCCACCCTTTATTGTAATTCACTCACTTCAATTCATCCTCAAATCTCTACATTATTATGCAATTTGACATGATTATAT AAATATTGCACATGTTTTTGATTGAAAACTGATCACACATTTTTAATAATGCTCTGTTTTTGGACCACAGAAAGACAAGA ATATGGCTAGGAACCTTCGAAACAGCTGAGGATGCAGCAAGAGCGTACGATGAAGCAGCCAGGCTCATGTGTGGTCCAAA AGCACGCACCAATTTCCCATACAATGCATCACTCTCTTCTTCATCATCGAAGCTTCTCTCTGCAACTTTAACTGCTAAGC TACACAAGTGCCACATGGCTTCCCTTTCCCTTCAAATGGCAAAGCAGAAACAAGAGCAGAAAGAGCCTCAAGTGTCACAG CAACAGTTTCAACCTTGCAATGATGTTTCTGGAACAAGTTTTGAAACTGGTTTCAGATGGCAAGAGAACAGGCACGAGGA GTTAATGTGGTTTCAAGGGAATTGCCAAGTAGTTGAGGTTTCCCAACAACAGTTTCAACCTGTTCTTGAAGATGATCACA TTGAGCAGATGATACAGGAGTTGCTTGATTATGGGTCAATTGAGCTTTGCTCTGTTGGCTCTGCTTAGACTCTTCAATGT AGTGTTCTTCTCCATTGGTCAGTGCAAAAACCACATCTTTTTGGGGGGAGTCTGGTACTAATTCACCATGTAATAAAACC ATGTTTGGTAATCCTTCTACAATTGATTCTAATGTCAGAATCAATTCTGAGTAGAAGCTTTAGTAAGTAGCTTCTGAATT TCAGAATTGATTCTGAGAAAATAGAAGTTAATCCAAACATGTAGCGTAGGTCGTAGGATGTTTAAACTGAGTTTCAACTC CTTCACCAATTAGTGGACAACCATGTAGTTATGATAATGTAGCCAATCATGCATTTGATGGACTATAATTTAGAATTAGT GTTAAAGAAAACAATTTTTTTGCTTCTCTTTTTTTGTTTATTGATGAAAGTTGCCCAAAATTCCTCAGAAAGTGCAGGAT GGTAGTGGGACCATAGTGTCTGTCTGTGTTAGAATATGATATCCCTGCTGCTGCTTTTAGTTGTTTATACATTGTTTCTC ATCATTATAATACTGGGGTGATAAACTTTGGATTATATGTCAACAAAGACAATAACAAAAAGAGAGGGAGAGGAGAATTG CAAAGCAAATGTGGGAAAACCTTAACCATTGTTGGACTGCCAAGGTAAAGACAAATTAATTAATATTGTTAGCACTTTTT TGTCATAAAGAAACTACCATTTGGCAGTAGCAGGCGCTGGAGTCAATAGTAACTACACACCTACGGGCCAGGGATCATGA GAAGAGTCATGAAAAGGAAATATTGAAGGCAGCAATTTGAAAAAAATAATGATTTTTTCACACTTCAATATCAATTACAT TATACATCTCTTTCCGAACTTTTCTTTTTTTTTCCCTCACTGACTTCTTTAACAGTGTCTTTTGATACAAGTTAAATGTA AAGTGAAAGTTTTTTTTTTCTAGTACAAATCTATTAACTTTTTGTTAAGTAAATGTTATC
CDS sequence (LotjaGi3g1v0351700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAGACCCCAACAACGCTATCGTGGTGTCCGCCAGAGACACTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTTT ATTAAAGACAAGAATATGGCTAGGAACCTTCGAAACAGCTGAGGATGCAGCAAGAGCGTACGATGAAGCAGCCAGGCTCA TGTGTGGTCCAAAAGCACGCACCAATTTCCCATACAATGCATCACTCTCTTCTTCATCATCGAAGCTTCTCTCTGCAACT TTAACTGCTAAGCTACACAAGTGCCACATGGCTTCCCTTTCCCTTCAAATGGCAAAGCAGAAACAAGAGCAGAAAGAGCC TCAAGTGTCACAGCAACAGTTTCAACCTTGCAATGATGTTTCTGGAACAAGTTTTGAAACTGGTTTCAGATGGCAAGAGA ACAGGCACGAGGAGTTAATGTGGTTTCAAGGGAATTGCCAAGTAGTTGAGGTTTCCCAACAACAGTTTCAACCTGTTCTT GAAGATGATCACATTGAGCAGATGATACAGGAGTTGCTTGATTATGGGTCAATTGAGCTTTGCTCTGTTGGCTCTGCTTA G
Protein sequence (LotjaGi3g1v0351700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNASLSSSSSKLLSAT LTAKLHKCHMASLSLQMAKQKQEQKEPQVSQQQFQPCNDVSGTSFETGFRWQENRHEELMWFQGNCQVVEVSQQQFQPVL EDDHIEQMIQELLDYGSIELCSVGSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 182 | 182 | 1.3E-89 | – | |
PANTHER | 1 | 182 | 182 | 1.3E-89 | – | |
Gene3D | 6 | 66 | 61 | 6.5E-30 | ||
CDD | 6 | 66 | 61 | 2.0204E-35 | ||
Pfam | 7 | 56 | 50 | 3.2E-11 | ||
SMART | 7 | 70 | 64 | 4.9E-40 | ||
ProSiteProfiles | 7 | 64 | 58 | 21.127 | ||
SUPERFAMILY | 7 | 66 | 60 | 4.05E-21 | ||
PRINTS | 8 | 19 | 12 | 3.0E-11 | ||
PRINTS | 30 | 46 | 17 | 3.0E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0351700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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