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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0352000 |
| Transcript ID | LotjaGi3g1v0352000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein; TAIR: AT1G80630.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4; TrEMBL-Plants: tr|I1KGW4|I1KGW4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0352000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73160037..73165196) extracted from Lotus japonicus Gifu genome v1.2.
AAAGAAGGGAAAACAATGTCAACTCATCTTGCGTTTCGAGAAGATCAAATTCGGCCTATATAGCACCGGAGTGGTGAACT GAAGAAGAACAAGCTTCGAAGGCGGAGTTGTGAGCTTTTGTGAATTCCATTCGAGGAAAACAATGTCTGCAGATATAGAT ATTCAGTTTTTACCAGAAGAGTGTTGGGAATGTGTATTGACATTCCTGAATAAGCAGAAGTATCATCATTACATGGAATC TGTCTCCCTCGTCTCCAAGCAATTCCTCTCCATCACCAACCGCATCCGATCCACCCTCGCCATCTCCGACCACACACTCC CCTTCCTCCCTCTCCTCCTCCACAGGTTCCCCAACCTCACCTCCCTCGAGTTCACGCACTTCTATGATTTCCTCGACACG GTTCTCTTCCAAATCTCGCGCTACCCCTTGCGCCGCCTCACATCGCTCAACATCTCGCACCGTGCACCATTTCCCACAGA TGGGTTGCGAGCTTTGGCCGAAAACACAAAAACTTTGACCTCTCTCAATTGCTCTGACATGGATTATCTCTCATACTACG ACTTCCTCTTCATCACCAATTCTTTCCCTTTCCTCGAAGAACTCGACATTAGCCATCTCAAAAGTCGTGGGATAGAGCCT TTGCCCAAGCTCCTCCGCAAGGTTAATCTCTCTGGCGGATCCTTCATTACCGACGCAGAGCTTATCAGTGCGTGCAAGAA CTGTAAGTTTCTCGAAGAATTGGTCATCTTTCAATGCCCTTTGTTAACCCAGCGTGGCATTGCTTCCGCGATCCGCCAGA GACCCGGTTTGAGGTCTTTCTCCGTTGAACTTACCAAGAGCGTGATTGTCACTAAAAGCTTCATTGGTTCATTGGTAAGT TTGAAGAACTTGACTTGTCTTGATTTTAAGGATTCGTGTATCTCGGATAAATTGCTCTGCTCTGTAGCAGAGGAAGGTCT TCCTTTGAGGAAGCTTGTCCTCAATCGTTGCCGCAACTACACCTATTCTGGAATCTTGTACTTGTTGTCAAGGTGTCAGT TTGTCCAGCATTTGGGTCTTCAATATGCTGAATTTCTGAATGATCAGCTTCTCACCGAGTTGTCTATATTTCTGGGTAGT TTGATATCTATAGACATTAGGCGCTGTGGGATTCTCACAGATTCACCCCTTTTTGCACTCATCAGGAACTGTCCTTTGCT CAATGAGATCAAATTGGAGGGAACAGATATTGGGAAAAAGAAGGTCAAGTATTCCAATTCATTCATGAATTGTTTTGTGA ACCCTCAGGTGAAGTCTCTCCATTTGGCTTGGAATCCATCGTTGAGAGATGAAAGCATCAAAATGTTGAGTTCCATTTGC CCCAATCTGCAGATGCTTGACTTGAATTATAGCGGAGGGAATCAGATATCTGAAGCTGTTGTTGGAGTTTTAAGGAGATG CTGTAAGATGAGGCATTTGATTCTAGGCTACCATTCACGAGTGAAGTTGCATCAGATGAACTTTGATGTTCCCAATCTGG AGGTGTTGAGCTTTGCTAGTTCAGGAATTGATAATCAAACTCTGTCTGTGGTCTCAAAGAATTTCTGTGGCCTTCTGTAC CTGGACCTATATAATTGTCGAAGTGTCACAACCAAGGGAGTGCGGGAAATAGTAGAAAACTGCAAAAACCTGAGAGAGAT AAACTTAAGTCATTGTTATAAAGTGAATGGCAGTGTTGTTGCTTGGATGGTATCTTCAAGACCATCATTGAGAAAGATAG TGCCTCCACCTGATTTTAAACGAAGTGCCAGCCAGAGTGAACTGTTCTTGCGTCATGGATGTCGTGTCTGCTGGTGAGAT GGTGTGAAGTGAGGGGGGAAGATAAACACTGAGGAGGTAAATTTTGTATTTTGAGTGTTTATTTTGTCAGGATAATTTTA ATGTTTGTGAGCTGTAAAAATATTTACATATATTTATCCAAAGTTTTAGTTTGGATTGGATTTACAAGTATTTCTCATTT GTACACAAATCCATATTTTATAACACGAGTTCTATCCCATTAATGACACATTGGTCTCAATACTGCATACATCTCACTCA GTCACTGCTATCTTTGGACTTCAGGCAGTGGCAGAGCTTCCTTCAGGCACATAGCAGATTATCTTAATTTGCAGTTTGTT TGCTAGTCTTACTTAAAACTACAGTGAATTATGTTCCCTCTCTTTAGTGCATCCAAAGCTGAATAATATTATTGAAATCC TTATAATTTAAATGATCTAAGTCTCATCTGTATAAAACTTTTTGATGCCAATATCAATCATTTACTTTGTTGCTTTTCTT AACACTATTGTTGAAATATGTTCAAGTTACAGGCCCTCTTATCTTATGAGTCTGCTTATGATTATGGAACGGTTGAAGGC ATGCCTGCCGTCTACGCCGGTGAAGATATACAATTCTGAGGATGACTTGATTTCAGAAGAGGATCCTGAGAATGATGATG ACAGAGACGCTTATGAAGTACTTGTTCCAAAACTTTCTTTGGAAAAAGACTTTGAATCTGCTCATGAAGTTGAATCAGAT GAAGAAGATGAAGTCTATAGGAATGACATATTTGAAGGGCTTCAAATTAGTCACACCGAGATGTTTGCAGATTTGGACGA CGAAGAGAAATTTTTGCATCAGGGTGGCGGCCAGGAGCATGTTCACGATTCTGCCTCTACACCGGCAGTGGTGGTGGTTG AGCAGCAGCGGCCAGAGACGGAGCAGCCATGAGGGGTGGCCATGATTTCAAATTCAAACGTCATCAATGCATCCTTCAAT ACATAAGAGAAACTCAAGGAGCAGTTACAGGTGTTATTGGCACCAGGTTATACGTTGAAGGAGTTAGAGGGATGGAGGAG CAACTTAAATTCAGAAGGAATCTTGATAAAAGAAAATCAACCTTGTATTAATGAATTTCAAAATCCTGTTATTAACTTTG ATAACAAATTTTCTGTTACAGATTACTCTTTTAAACTCACAGGATTTGGTTCAAAATTATAGATGACCTTTTCATGCAAC TTATTGGGACCCACAACATATTCAGCAGCAACAAACACCAAGGCCATGTTTGCCTCCCCTCTTTAACAGTCAAAACGAGT TTTTGAGGCTTGCCACAACTTCCACAAACTCGCCAGCTTCTGCACCTCAGGAAGGAAATCACGTAACACGTGAAACATTC ATCAGAACCTCATCTCATCAAATTGTTCGGAAAATTTCTTCACCTCCATCAACAACCCCTCTGTTACGTGAAAACAAAGA GCCTAAGACGCCAAAGAGAACTTTATCGCTCATATCCTCAGTGCCAAGCGCTCTGACGCCTCTCAATTCCCCAAATACAA ATTCATCTCAAAAAAAGTTCGCAGATGGGGCGTCCAAAAGGGAGTAAGAATAAACCCATAGCCTTGCTAGATGATTTCTT AGAGCCAATTACAAGAGAAGACGGGGTGACAACGCGCGCGCAAAGAGCATGGTTGATTGGAAAGCAGCTGGGACTTAAAC CACGCGGATCAAAAGCTTTGATGCTGAGAGGTTTGAAAGCTCAAATACGTGAAAATCATCCCCACCTCAATTGATATGTC GGGGCCTTGGCTCACCTGGAATGTGTGTGGGCTAGGCGGAACTACAAAGAGGGAGGCTGTAAAAAAAGCACTTCAGCAAC TGAAACCAGAATTGCTTCTACTACAAGAAACTAAGTTGAATGAGCAGGGACAGAGGACAATTGAACATTGGACGCAAAGT ATGCAGATGAATCAGGTTGAGGTTTAGTCAGTAGGAGCAGCAGGTGGCCTCATGTGTCTGTGGAGGGAGAACAGCATTCA AGTTCAGTCAGTGGTGACAGACACTAATTTTATCTTTTTGTCTATAAAAATTTCCAAGTTATGAACATACAGTTCTGGTG GGGAATGCTTATGGACCACATACTTTGGTGGAGCGTAGAGTATTTTTTGAGGCTTTGAAAGTGCATGTGTTGGGCCATGT TGGTATGGTGTTTCTTGGTGGCGATTTTAACGTTGTTCTACTGGGTTCGGAACGCTCTTCAGGTGGAGTGCTTGATGTAG GCGATGCGGTTTCAACAATTTGTCAAGGATACTAACTTATCAGACTTGCCTCTTTCGAATGGCGAGTACACTTGGTTCTC GAGCCGCAACGATGGCCAATGGAGTCAATTGGACAGATGGTTAGTGTCTGACGAGGAAATCTAATATAAGTTGAAGACCC AATGGGTGCATCCTATAATTCCTGTTGCTTTCGTTGCTGCTGTTTTTGTTGCTGCTGTTATTGAGATGCTGAGTCGGTTG TTGCTGATAATTTTTAGTGAATGTTGGTCCTGGTTGTTGTTTGCGTTTGTTGCTGGTACTGGTGCGGTTTGCGGTTGCTG GTTGTTGATTGCTGGTGCTGATTCATGTTTGTTGTTGCTGTTTATTTCGCTGCTGTTAATTTTGTTGTTGTTTATGCTGC AGTTGAGTTCGTTGTTTGCTGTTTGTTGGTTACTGGTTGTTGTTGTTGTTTGCTGGTTGATGGTGGCTTTGTTGCTGTTT TTTGGGCTTTAAATTTATATGATGCTTCATAATTAAGCATGGAGGATTTTTTAGATTCGATTTCCATGTTTCATGTCTTT ATTGTTTTTATTTGCAAAGTGACTATCCCAAGCTTGTGGTACTATTTTTCCTTACTAAGTTTTTATCCCATTGTTTTTCC TAGTAAGGTTTTATTGAGACTCTTGCTTGGGATTACGTTGATGCCATTTTGCGGGTTGGTGGTGGGTTTTTTCAGTTTAT TGTATGCTGAACTTCGCTGGTTGCGTGTTTTGCACTAGTCATCTATTACTAATATATATACATCTTTCACTTTCAAAAAA AAAGCAATAAGCTTCTCATGTTTCCAAGGTTCAAACAAACAACAAACTGTGGGGTCTCTTTGTCTATCTAAAAAGCTTGG TCTTCTTTATTCAGGTCTTGAAATTCTAGCATTCTCATGCAATCAGTTTTGGGCACGGGAACCTGGATATAATGAATAGA TACAAGAGTTTGTTTGAACTCGCTTCAAAACCGAGTTCCCTGTTTTTAACAAGGTACAACCTTTGCTCATACTTGCTTAT TATTTCATTCTATCTATAATTATCAAACTTTATGATGTGT
CDS sequence (LotjaGi3g1v0352000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGCAGATATAGATATTCAGTTTTTACCAGAAGAGTGTTGGGAATGTGTATTGACATTCCTGAATAAGCAGAAGTA TCATCATTACATGGAATCTGTCTCCCTCGTCTCCAAGCAATTCCTCTCCATCACCAACCGCATCCGATCCACCCTCGCCA TCTCCGACCACACACTCCCCTTCCTCCCTCTCCTCCTCCACAGGTTCCCCAACCTCACCTCCCTCGAGTTCACGCACTTC TATGATTTCCTCGACACGGTTCTCTTCCAAATCTCGCGCTACCCCTTGCGCCGCCTCACATCGCTCAACATCTCGCACCG TGCACCATTTCCCACAGATGGGTTGCGAGCTTTGGCCGAAAACACAAAAACTTTGACCTCTCTCAATTGCTCTGACATGG ATTATCTCTCATACTACGACTTCCTCTTCATCACCAATTCTTTCCCTTTCCTCGAAGAACTCGACATTAGCCATCTCAAA AGTCGTGGGATAGAGCCTTTGCCCAAGCTCCTCCGCAAGGTTAATCTCTCTGGCGGATCCTTCATTACCGACGCAGAGCT TATCAGTGCGTGCAAGAACTGTAAGTTTCTCGAAGAATTGGTCATCTTTCAATGCCCTTTGTTAACCCAGCGTGGCATTG CTTCCGCGATCCGCCAGAGACCCGGTTTGAGGTCTTTCTCCGTTGAACTTACCAAGAGCGTGATTGTCACTAAAAGCTTC ATTGGTTCATTGGTAAGTTTGAAGAACTTGACTTGTCTTGATTTTAAGGATTCGTGTATCTCGGATAAATTGCTCTGCTC TGTAGCAGAGGAAGGTCTTCCTTTGAGGAAGCTTGTCCTCAATCGTTGCCGCAACTACACCTATTCTGGAATCTTGTACT TGTTGTCAAGGTGTCAGTTTGTCCAGCATTTGGGTCTTCAATATGCTGAATTTCTGAATGATCAGCTTCTCACCGAGTTG TCTATATTTCTGGGTAGTTTGATATCTATAGACATTAGGCGCTGTGGGATTCTCACAGATTCACCCCTTTTTGCACTCAT CAGGAACTGTCCTTTGCTCAATGAGATCAAATTGGAGGGAACAGATATTGGGAAAAAGAAGGTCAAGTATTCCAATTCAT TCATGAATTGTTTTGTGAACCCTCAGGTGAAGTCTCTCCATTTGGCTTGGAATCCATCGTTGAGAGATGAAAGCATCAAA ATGTTGAGTTCCATTTGCCCCAATCTGCAGATGCTTGACTTGAATTATAGCGGAGGGAATCAGATATCTGAAGCTGTTGT TGGAGTTTTAAGGAGATGCTGTAAGATGAGGCATTTGATTCTAGGCTACCATTCACGAGTGAAGTTGCATCAGATGAACT TTGATGTTCCCAATCTGGAGGTGTTGAGCTTTGCTAGTTCAGGAATTGATAATCAAACTCTGTCTGTGGTCTCAAAGAAT TTCTGTGGCCTTCTGTACCTGGACCTATATAATTGTCGAAGTGTCACAACCAAGGGAGTGCGGGAAATAGTAGAAAACTG CAAAAACCTGAGAGAGATAAACTTAAGTCATTGTTATAAAGTGAATGGCAGTGTTGTTGCTTGGATGGTATCTTCAAGAC CATCATTGAGAAAGATAGTGCCTCCACCTGATTTTAAACGAAGTGCCAGCCAGAGTGAACTGTTCTTGCGTCATGGATGT CGTGTCTGCTGGTGA
Protein sequence (LotjaGi3g1v0352000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSADIDIQFLPEECWECVLTFLNKQKYHHYMESVSLVSKQFLSITNRIRSTLAISDHTLPFLPLLLHRFPNLTSLEFTHF YDFLDTVLFQISRYPLRRLTSLNISHRAPFPTDGLRALAENTKTLTSLNCSDMDYLSYYDFLFITNSFPFLEELDISHLK SRGIEPLPKLLRKVNLSGGSFITDAELISACKNCKFLEELVIFQCPLLTQRGIASAIRQRPGLRSFSVELTKSVIVTKSF IGSLVSLKNLTCLDFKDSCISDKLLCSVAEEGLPLRKLVLNRCRNYTYSGILYLLSRCQFVQHLGLQYAEFLNDQLLTEL SIFLGSLISIDIRRCGILTDSPLFALIRNCPLLNEIKLEGTDIGKKKVKYSNSFMNCFVNPQVKSLHLAWNPSLRDESIK MLSSICPNLQMLDLNYSGGNQISEAVVGVLRRCCKMRHLILGYHSRVKLHQMNFDVPNLEVLSFASSGIDNQTLSVVSKN FCGLLYLDLYNCRSVTTKGVREIVENCKNLREINLSHCYKVNGSVVAWMVSSRPSLRKIVPPPDFKRSASQSELFLRHGC RVCW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 560 | 552 | 2.2E-195 | – | |
| PANTHER | 9 | 560 | 552 | 2.2E-195 | – | |
| Gene3D | 35 | 338 | 304 | 8.5E-34 | ||
| SUPERFAMILY | 58 | 160 | 103 | 4.71E-10 | – | |
| SMART | 96 | 121 | 26 | 240.0 | ||
| SUPERFAMILY | 148 | 307 | 160 | 1.02E-16 | – | |
| SMART | 168 | 193 | 26 | 450.0 | ||
| SMART | 194 | 219 | 26 | 68.0 | ||
| SMART | 272 | 297 | 26 | 81.0 | ||
| SUPERFAMILY | 285 | 539 | 255 | 5.76E-31 | – | |
| SMART | 324 | 349 | 26 | 110.0 | ||
| Gene3D | 341 | 450 | 110 | 6.1E-11 | ||
| Gene3D | 451 | 540 | 90 | 3.1E-14 | ||
| SMART | 482 | 506 | 25 | 12.0 | ||
| SMART | 507 | 532 | 26 | 18.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0352000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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