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LotjaGi3g1v0352800.1

Overview

Field Value
Gene ID LotjaGi3g1v0352800
Transcript ID LotjaGi3g1v0352800.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor; TAIR: AT1G80580.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9M8M5|ERF84_ARATH Ethylene-responsive transcription factor ERF084; TrEMBL-Plants: tr|K7KZB3|K7KZB3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0352800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:73237355..73238292) extracted from Lotus japonicus Gifu genome v1.2.

TCACACTTTGCAAGAACTTAGCTAGATTAGAACTTAGAAGTTACAACACCCACCACCACCATGAACGGTGAAATCTTCTT ACACACGGCCACAACCACCACCACCACCGCCACATTTCTTCCAGTTCACCATGCACCCGAATCGCACGACCCATCATGCT TCCCATTTCAGCCTCCTCGTGCCTCAAGCAACGAAACGACCCTCGAAGGAATCGCAGCGGTCGTCGGAGAACGCGTCCTC TACGGACCCAATCACCGTCAACCGGTGACCTCTTCGGGTTCGGAGGCGGGTACGCCGAAGAAGAAGGCGGCGGAGAAGAA GACCGGCGCGAGCACGAGCTACAGAGGAGTGAGGAAGAGGCCCTGGGGGAGGTGGTCGGCGGAGATACGCGACCGGATCG GCCGGTGCCGCCACTGGCTGGGTACGTTCGACACGGCTGAGGAGGCGGCGCGTGCTTACGACGCGGCCGCGAGGCGCCTG AGAGGCTCCAAGGCTCGGACCAACTTCAAAATACCTTCGGTTTTGCCGCTGCTTTCGCCGCCGCAACCGAACTCGGAGAT GAATCCGGTCACCGGAGTTACTGGTAAGCCGAAAACTACGCGCAAGGGAAATAAGAAGTGCTCTGTGGATGTGGTTACTT CGGTGGAACAATTGTTCAGTGGGGTCCCTGCAGTTCGAAGAGGAAGAGAAATTCATGTTCATAACAGCAATGTGGAGGTG AAGTTGAAGCTTGGTGGTGCTGGTAGAAACAGTACTAGAATGGTGATGTAGGTTAAATTGTACATATAAACATGTAGGTT GCTCTTCATGTTCTGAGTTTCTTTTTGTGTGGGACTGTGGTGTTTTATATATGGTGGTTTATTTGGGTATGAATCTCTGC AATGAATGGAACATTTAACCATGGAAATATATTATATATGTACTTAATTTGAATGAGG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0352800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACGGTGAAATCTTCTTACACACGGCCACAACCACCACCACCACCGCCACATTTCTTCCAGTTCACCATGCACCCGA ATCGCACGACCCATCATGCTTCCCATTTCAGCCTCCTCGTGCCTCAAGCAACGAAACGACCCTCGAAGGAATCGCAGCGG TCGTCGGAGAACGCGTCCTCTACGGACCCAATCACCGTCAACCGGTGACCTCTTCGGGTTCGGAGGCGGGTACGCCGAAG AAGAAGGCGGCGGAGAAGAAGACCGGCGCGAGCACGAGCTACAGAGGAGTGAGGAAGAGGCCCTGGGGGAGGTGGTCGGC GGAGATACGCGACCGGATCGGCCGGTGCCGCCACTGGCTGGGTACGTTCGACACGGCTGAGGAGGCGGCGCGTGCTTACG ACGCGGCCGCGAGGCGCCTGAGAGGCTCCAAGGCTCGGACCAACTTCAAAATACCTTCGGTTTTGCCGCTGCTTTCGCCG CCGCAACCGAACTCGGAGATGAATCCGGTCACCGGAGTTACTGGTAAGCCGAAAACTACGCGCAAGGGAAATAAGAAGTG CTCTGTGGATGTGGTTACTTCGGTGGAACAATTGTTCAGTGGGGTCCCTGCAGTTCGAAGAGGAAGAGAAATTCATGTTC ATAACAGCAATGTGGAGGTGAAGTTGAAGCTTGGTGGTGCTGGTAGAAACAGTACTAGAATGGTGATGTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0352800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNGEIFLHTATTTTTTATFLPVHHAPESHDPSCFPFQPPRASSNETTLEGIAAVVGERVLYGPNHRQPVTSSGSEAGTPK KKAAEKKTGASTSYRGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGSKARTNFKIPSVLPLLSP PQPNSEMNPVTGVTGKPKTTRKGNKKCSVDVVTSVEQLFSGVPAVRRGREIHVHNSNVEVKLKLGGAGRNSTRMVM
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31677
32 230 199 5.1E-77 –
PANTHER
PTHR31677:SF75
32 230 199 5.1E-77 –
MobiDBLite
mobidb-lite
62 97 36 - –
Gene3D
G3DSA:3.30.730.10
92 151 60 4.2E-29
IPR036955
ProSiteProfiles
PS51032
93 150 58 22.669
IPR001471
Pfam
PF00847
93 142 50 1.2E-14
IPR001471
SMART
SM00380
93 156 64 2.1E-33
IPR001471
SUPERFAMILY
SSF54171
93 150 58 7.85E-22
IPR016177
CDD
cd00018
94 151 58 1.08702E-15
IPR001471
PRINTS
PR00367
94 105 12 8.7E-11
IPR001471
PRINTS
PR00367
116 132 17 8.7E-11
IPR001471
MobiDBLite
mobidb-lite
154 185 32 - –
MobiDBLite
mobidb-lite
164 178 15 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0352800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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