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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0352900 |
| Transcript ID | LotjaGi3g1v0352900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G37850.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9T072|BH025_ARATH Transcription factor bHLH25; TrEMBL-Plants: tr|A0A0B2P154|A0A0B2P154_GLYSO Transcription factor bHLH25; Found in the gene: LotjaGi3g1v0352900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73298683..73303246) extracted from Lotus japonicus Gifu genome v1.2.
CTTACACCGTCCATTCCTAAGTGCTAATGGTCCCACTCCTGCACTGTTGATCAAAGTTAGATCAAACGGCTCAAATTAAA GTTGCATGAAAAACGAGCAATATCTTGTCTCCATCGCCATCCTACACTTGTGGCAACCATTCCCCATAGGGGCTATTAAC TATAAATTTATACCCCTTCTTTGGAAATCCTGAAAAAATAATCATACACTGCACGCATTCACACATTGCCTAGCTAACAA TTTGACTTAGCTGCTAGCTACATTGATTCTGATGGAGGAGTCATGGGAAAATTGGCACCTTCATCCGGTATAATCATCAT CACACTCTCTCACAATCCTCTGCATAATTTTATAACATTTATACAATCTATTAATTTTTTCGTTTAATTCTTGTAGGAAA TGGATTGCGATGATGATTATTTTGCAAACAAGTCAAACATGGAGGAGGATGAGGAGTTTCTGAGACAGATCCTACTTCAG GCACCGGCTTTTTCTTCTGAAAGTGAGAGCAATAACTCGCTCCACGCTTCTTCCACCGTCGCATCTGAAGAGATTATTGG GAACATGGTGAAAAGCCACAGTTCAAACTCCATAGTGTCATCTCAACAGGGTCCTAAAAAGCCACGTGGCTCGTCTTCTC CGAAGGCTTACATTTTGTCGTTTGATAACTCAACCATTATTCCAGCGAACCCTGAGGGGAAATTATTGGGTAGCAATAAG GGAAGTACTCGAGGTACTAAGCGTTGTTCTGATTCTTCTTCTGCTCTGCCCAATAAATTACAGCAAGTTCAGAACACTGA ATCTGAGAAAACAAGGGCCAACAATCAAGGCACGAAGAGGGCCAGAACCACTTCTCAGACTATCGATCACATATTGGCAG AGAGGAAAAGGAGGCAGGAATTGACTGAGAGATTCATCGCACTTTCAGCAACCATTCCAGGCCTCAGCAAGGTAATTAAT TACTATAGCTAATTTTGTTTTTTCCAGAGTTGGATTAGATTATGTTTAGAAGTATTACATTGATCACACATATGACTAAA ATAGCACTGGGAAGTCAATCCTCATCATCTCGCATGCTAGTTTTTAAGGTGGAGTTAGATTTCTAAATTCTAATAAACTA TTAATCAGTAATTTTATAATTTAGGCATGATGGATTTTTTATAATAAGCTAAAGTATTGCATTAAAAGATAGTAGTATAA GAGGTATACCAACCTTTAAAACAAATAAAAAGATACAGAAAGGAATAAGAGAAAGGCATGATGATCTAGGGAAAGTAATA TTTACATATTAATTTTGACAATCATTAAAGTAAAAAGTATTTATGTGGATCGTTCAATCATTTTGTATGCGTAACCCACC ATGAATTGTTTATTTGTACCTACCCTTGTTACGTATCTATATTAGTAATTTACAACAAACTTTTAAGTGCTCATCAATTT GTGGGGTCGATGGCTTTTGACAACAAAATTTAAATTGCTCTCTTGAATACCATTGTCTCATATTAATAATACATGTCACC GATATTGAAGAGTAGATGTTTCATTTTCCTAAAATAATTTTCTGGTCAAAAGTTGTTAGGAAAGCATAACTACTGGGGAT GTATTACATGTTTAATTTCTAATTTGAACAAAATGATTTTCTATAGAAAATACTTGTATAAAAAAATTTAAAATGGGGAG GTCTACTCATTTAATATAATTTTAAGTTTTAAAAAAATTAGTAACTATCCGCAATCATATACCAAAATAATAATTGAAAA GTACTAGTTGAAGTCCATGTAGGAACGGATGTCTTTTGACAATAAATTTAAGTTCAACAGTGAGATCGATGCCTTCGACA AGAAATTTTAGATTCTAGTTTTGAATACCATACCATAGTCTCATGTTAATAGTAATACATGTTTAAATTCTAGTCTTAAA TGCATGATGTCATTAATACATATGTGATTAATATTTAAGTGATACATGTTTATTTTTTTTAAGTAATATCTTGAATTCTA ATTTTATATGTGAAAAAATTGTTAGAAGAACTAGCCTTACTAACTAGGATGTAGATGTTTGTTTTTTTCTTGAATAAAAA AATATGAAGATGTGAATCAAATAATTTGTTTTTTATGATAGTCTTATTTAGGAAGTGAAATACAGTGTTTATTACTTTAT TTTTATAACAATTTTCAATTTTGGAATACCTAATTATATTTTCTATTAATAAATTGGCAATAAGTGTCCAAAACAATTAA TAATGAGTTCAATTTCTATGCACCGACGGTGTAAAGTTTTTTTACACCGTCAACCAATCGGATTTTAAGGATGTGAGAAA ATCTCTCTTTTTATTCAATTTCATTAATTGACGTGACACATCCTTAAAATCTGATTGGTTGACGGTGTAAAAGAACTTTA CACCGTCGGTGCATAATCCTTTTTTTCATTAATAATTAATTAAATATGTATGCGTTTGGATTTTTGTTAATTCAATATAA ATCTATTTTAAAGTAACGTATCAAAATCTTGTTTCTCATATTCATGTTAAATTTAATGTCAAAAAATTTATTTTTTTATA AGTGTTTTATAAAACGTGAAATGTTTACGTTAACTCTAACACCAAAAACATTCAATATAAAACGTGATTTCACTAAAGGG GTATATGCATGCACTAGTCTTGATGAATACAGTACAATCTTTGTAGGGAAGATAGGGGGTGGTGAGGGGTACATTATTAT TCATTAATTCACAAATCTTGATCATAAATCAGAATCAATCATATATATGGTGTAGAAATCAATGCAGGGATTACACCGTG TCGGTTTATCTGTGTCTTATTACATGACTTTCTAAGATACCGCGCACTGCACAAAACATGTGGTAATCATAATCACAAAT TGACAAAAACAGTATTCTCTAATCTCTATCTCACTACTGTATGGTGGCAATAAATAATGCAGTTTGTTGTGATTGTGAAT CCCCTTATAGTTATCTCCATTTAATTTAATAGACAGATAAGGCGTCTGTACTCAGAGCAGCGATCGATTACGTGAAACAA CTCAAAGAACGTGTACAAGAACTAGAGAAACAAGAGAAGAAAAATGGTGTTGAAAAAGTGATTGTGATCAAGAAACCCGA TCTACGTGGAAATGAAGACACCACAAACTCGGGTGATATAATTACTACAAGTTCTGATCATGATGACTGTAGTACAATCC TCCCTGAGATTGCTGCAAGAGCATTGGGGAAAGAGGTGCTCATTGAGATCCACTGCGAGAAAGAAAATGGCACAGAGCTC AAAATACTGGACCACCTTGAAAATCTTCACCTCTCTGTCAATGGTAGCAGCGTCTTGCCGTTTGGGAATTCCGCTCTTTC CGTTACTGTTATTGCTCAGGTAAACACACATATTACATATATGCATCAGCACAATTTTTTTATTCTAATTTCAAGGCTGA AGATCGGCATGTTCATGTCGTAAGCCATATTTTAAGGTTCCGTTTTCTAGACGGTGTGACCTACTAATTTGTTTAATAAA AAATGACCTACTAGTTGCCTGATAAATAGGATCTCATTATTGTTTAAAACAAGATTATTAAAAATCTTACTCAAACAACT AAAAAATTAAAAAATTATTTTTATTATAAAAATATAGTATAACAAACGGATCTTGGTTGTAATGTCAGTCTTGTTTCACT GTTAAGTGTGTGCTGTGCACATATAATTAATGTTGTGTACCCTATGATTGTCGATATATTAATGGCATACTGAAATCTTC AATTAATTATCACTGTTTACATTTTGCAGATGGGTGACGCGTATGGAATGACAATGAATGATCTCGTGAATAGCCTCAGG CAATTGCTCTTGAAGTCCCAAATGAGCAGTGACAGTGATCCGTACTAGTGTATCAATTACCAAGGAACAAAGTTGCAGTG TGTGAAATTGGAAGTTTTGACTTCTTTGTTTTTTTTTTTAGTTTAGTAGTACTTGTTCGTTTTCGTGTTAATTGTAATAT CTATGAACAGAAACTATGTTTAAAAATAATTTACTACTCTTCGTTTACTCTGATAGCTTATTATATATAGACAGAAATCA CAACATATAAATGTTTTTCATGTATAACCCTCAGCCACATACATATGACCCCAATTAATTAATTATAGACCACAACTTGA AGCAAGCATTAAATGAATTGTGCATGTCAATGTACTATATTAAATCATATCTGGATCTGACATTGGGGATATTTTAGACG GTGAACTAAAAAAAGGAGGGAGTTGTGGCCAAAAATAGCAAGTCTTCATAGAATTGTGGTGTTGTGGTGGAGATTTTGAT GAGATTCCCTTCCCACATGCATATGAGAAAGAAAGATTGAGGTCCCAGCCTAATTAATTCCGAATCAAGAGGTTTAAGGA CTTTCTTCACAGGGCAAAGCTAATGGATCTGAAGTCTGAACCACAATGGGGGCAAATTCCCTTGGTTTTAATATCAAAAT TTCTAATTAGGAAAAACTCTTTAGAAATTAAAGAGTTATTTCGAAAACTTTAAGTAGCACCAAAGAGTAGAAGTTGAAAA GCCG
CDS sequence (LotjaGi3g1v0352900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGTCATGGGAAAATTGGCACCTTCATCCGGAAATGGATTGCGATGATGATTATTTTGCAAACAAGTCAAACAT GGAGGAGGATGAGGAGTTTCTGAGACAGATCCTACTTCAGGCACCGGCTTTTTCTTCTGAAAGTGAGAGCAATAACTCGC TCCACGCTTCTTCCACCGTCGCATCTGAAGAGATTATTGGGAACATGGTGAAAAGCCACAGTTCAAACTCCATAGTGTCA TCTCAACAGGGTCCTAAAAAGCCACGTGGCTCGTCTTCTCCGAAGGCTTACATTTTGTCGTTTGATAACTCAACCATTAT TCCAGCGAACCCTGAGGGGAAATTATTGGGTAGCAATAAGGGAAGTACTCGAGGTACTAAGCGTTGTTCTGATTCTTCTT CTGCTCTGCCCAATAAATTACAGCAAGTTCAGAACACTGAATCTGAGAAAACAAGGGCCAACAATCAAGGCACGAAGAGG GCCAGAACCACTTCTCAGACTATCGATCACATATTGGCAGAGAGGAAAAGGAGGCAGGAATTGACTGAGAGATTCATCGC ACTTTCAGCAACCATTCCAGGCCTCAGCAAGACAGATAAGGCGTCTGTACTCAGAGCAGCGATCGATTACGTGAAACAAC TCAAAGAACGTGTACAAGAACTAGAGAAACAAGAGAAGAAAAATGGTGTTGAAAAAGTGATTGTGATCAAGAAACCCGAT CTACGTGGAAATGAAGACACCACAAACTCGGGTGATATAATTACTACAAGTTCTGATCATGATGACTGTAGTACAATCCT CCCTGAGATTGCTGCAAGAGCATTGGGGAAAGAGGTGCTCATTGAGATCCACTGCGAGAAAGAAAATGGCACAGAGCTCA AAATACTGGACCACCTTGAAAATCTTCACCTCTCTGTCAATGGTAGCAGCGTCTTGCCGTTTGGGAATTCCGCTCTTTCC GTTACTGTTATTGCTCAGATGGGTGACGCGTATGGAATGACAATGAATGATCTCGTGAATAGCCTCAGGCAATTGCTCTT GAAGTCCCAAATGAGCAGTGACAGTGATCCGTACTAG
Protein sequence (LotjaGi3g1v0352900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEESWENWHLHPEMDCDDDYFANKSNMEEDEEFLRQILLQAPAFSSESESNNSLHASSTVASEEIIGNMVKSHSSNSIVS SQQGPKKPRGSSSPKAYILSFDNSTIIPANPEGKLLGSNKGSTRGTKRCSDSSSALPNKLQQVQNTESEKTRANNQGTKR ARTTSQTIDHILAERKRRQELTERFIALSATIPGLSKTDKASVLRAAIDYVKQLKERVQELEKQEKKNGVEKVIVIKKPD LRGNEDTTNSGDIITTSSDHDDCSTILPEIAARALGKEVLIEIHCEKENGTELKILDHLENLHLSVNGSSVLPFGNSALS VTVIAQMGDAYGMTMNDLVNSLRQLLLKSQMSSDSDPY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 347 | 347 | 1.1E-129 | – | |
| PANTHER | 1 | 347 | 347 | 1.1E-129 | – | |
| MobiDBLite | 72 | 89 | 18 | - | – | |
| MobiDBLite | 72 | 95 | 24 | - | – | |
| MobiDBLite | 109 | 164 | 56 | - | – | |
| MobiDBLite | 116 | 164 | 49 | - | – | |
| Gene3D | 141 | 229 | 89 | 5.3E-15 | ||
| ProSiteProfiles | 165 | 214 | 50 | 15.51 | ||
| SUPERFAMILY | 166 | 226 | 61 | 4.32E-16 | ||
| Pfam | 170 | 215 | 46 | 7.7E-9 | ||
| CDD | 170 | 219 | 50 | 1.04418E-11 | ||
| SMART | 171 | 220 | 50 | 2.9E-14 | ||
| Coils | 204 | 231 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0352900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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