Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0353200 |
| Transcript ID | LotjaGi3g1v0353200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT4G37850.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9T072|BH025_ARATH Transcription factor bHLH25; TrEMBL-Plants: tr|A0A0B2S1L0|A0A0B2S1L0_GLYSO Transcription factor bHLH19-like protein; Found in the gene: LotjaGi3g1v0353200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73348587..73352786) extracted from Lotus japonicus Gifu genome v1.2.
CGAGTTATAACAAAAAGATATACAAACATTTGCTCCTTCGAAAACTTATCAATCACTCGTTGTCCATGTCCTCTTATGGA TCGATTTGTGTATTTTCTTTCTATATATTTATAGGTTGATGATGAGTTGCGTGACTACACAGCCCATGCTCATTACCTCA AGCACAGTTCTCTCCTCACCTAATCCAAACTCTAACTGGTCGAATCTCCTAATTCCTCTCTCTCTTACCCACACGATCTT CACTCCAACATCATCTTCTTTGCGAATTCTTTTAATATATAGTACATAATTTTACATCACGGTCGTCAAATTATGGTGGA GTCAGGGGAAAATTGGCCTTGTGATCATTCTGTATTGGTAATAAAAGCAACACACATACATGATATGTTATATATATATG GTTATGGATCGGGACCTTCTTGGATCGTGTGTGTGCGCGTGTGTTGCTATCTATATGTAACTGATCATTTCTGTTGCTTT GGTGTTTTTTCATTGATTGTGTTGTGTAGGAAGTTGGTGGCGGTGGTGATGATGACGACGTTAAGGATTTATGTTTTGAA GATGAATTTATTGGTGATGATAATGATGATGGTCATTCTTTTGCTGAGGAGACTGTAGATCCCTTGACAGACAGAAAGGA GAGACAGCGGGAACTCTCTGAGAAATTGCTTGCACTTTCAGCCACCATACCTAGCATGAAGAAGGTTAGTAAAAACTATA TTAACATGACTCAAGCCATTGATTTCTTTGCATTTTTTTCTGTGTTATTGTGAGCTGTTATTTAAAACTAGACACTGAAA TGTTTGTTTGTCTTTCTTATGAGAAGTGAGAAGTAGTGATTCATTTCAATTACATGTGTCCCGTAGCAGTTTTTCACGAG AATTGATCCTAACTTTAGATTCAAACAATTATATATATGACTGTAAAAAAAAGAAAGACAATTATATATGAATTTTCAAA CATGCACTAAAATTGTGTGGATCTTTCATGTTTTGCTTCTGAGTTGTGTACCGATATTCTTCTTTGCCTATACAATTAAG GAAAGAGTAAAAGTTATTTAATTTCTGTGTAGATTTTAAATCTGGGTCAGAAAAAGTAACAGAAAAAACCCGGAAAAATA AAGTAGAGATGGTGATGGGTTAACCACTGGTAGGACAAGATTCTGTATGAATTTTGCTCATCCAATTATTCTTTAGAAAT TAGAAGATTACTTCAAATGGAAGGTACTGTGATATAGAGAGATGAATATTTTTGTTATGAAACATATTAATTAAGGCTTA AGAGTGTAATTTAAGCAAAGGACATGAGATGGGGTCAATGCCGTCCATGTCTTATTATCTTTTAAAGAAAGATGCTTTTG TGTTATTCTTTTAAAATGTCTAATTGCATTAAGAAAGCATTATTTCCAAGTCTAGTGCTACAAATAAAAATATTAATTAA TTAATAATAAAATTAAAATTATAAATACTTTTCAAATAAAGAAATCCACATATTATTGTTTCTAAAATTCCTTATATTTT TCTAAAACTAATTCCTCATGGGAGAGTTTAAGCGAGGAGGAGCACTGCAAGCCTAGGAATGGTTGCGCGTGACTCAGATG GTGCGGCTCTGGGTGCGGTTGCTTGTTTCCAGTGTCGACAATTATGCCTATGGTAGCTAGCAAAGAGTTTGGGTCTATGT TGGGCTATGTCTTTAGCCATTGACTTGGGTCTAATCAATTTGCTTAGAGACAGATTGTTTGCAAACTCTTCCACGCTTGG AAATTTTTTTGACCCGAGGTCTCACTGGCCATGGTGGTCAAGGATTGTCATCGATTGTCTTTAGGTTTTGATGTTATTTC TTTATCGTTTGTTCGTAGAAGTGGCAATTGTGTAGCAGATTTCTTGACAATGAACATTTTCATCTATCCTTAGTCAGTTT GGGTTTAGAAGGTTCCACCATAACTCATTATTTCTCTTGTTAAGGCTGATGTCCTAATTTCTATACCTTTATTTTAATGA ATTCTAGTACCATTTATATAAAAGAAAAAGGTTTAAGCGGGTGGCCCCGACCACGTGAGGTTTTAACGAAATAAAGTTCC TCAACTTGCAATTCTTTTTTTAAAAGGTTTATATATATAATGGTTTGGTATTTTCTAAAAACTTCAAAAAAATATAATAT GTTCCAAATTTTAGAAAAGGACAAAATAATCATCTCCCAAAGTGATTTGCGCGCATATTACCAAATCGACATCCAAACTT TTCATTATCCTTAATCTCCGGATTCATAAAGAAACGGAATAATGCAATTTTTTTTTGAAATAGAATAATGTAATTTTTTT AATATTGTACGAACTCTGTTAAATAATATAAAATGAAATGAGAGGCGGCGATATGGGATGGAATTGATATTTTTTTTAAA AGAGAATTGATATTTTTTTAAAGAGAATTGATATTATTTGTATATTTTAAAAATTCAAACTATATTTTTTCTAAAGGTAT TTCACATGCCATAGCAGAAACTGTCTGAACTATAAATATTCAAACTATAAAATAATGTAATATTTATTTTATTCTAATTG ATTTCATTCCTTACATAGTAGGAGTAGCATATAGGCTCCTACTTTGTACAAAAAAAAAAGCATATAGGCTCCTCCGTTTT CTTCAAGCGTAATTGTACGTCTCTTCTTTTTTTTAACGGTTAAGATCCTTATAACTATATAAGTAATGAATTATATTAAA AGTTCTTATTGAAATGTGTAGATGGACAATACTTCGATCCTGGACAAAGCTAGCAACTACGTGAAACAACTTCAAGAACG TGTGAGGGAGCTAGAACAAGAAGTTGATCAATCCCACATTCGTAGCAACAAAGGCACCACCTCTTGCGAAGTGAACTCTG AAAATTACCGTACTGGTGGAAGAACAAATGAAAATTTTCCCGAGGTGAGAGTGAGAGTGTTACAGAAGGAAGTAATGGTT ATAATCCATTGTGAAAAACAAAAGGGAATCATGCTCAAAATACTCTCTCATCTTGAAAATCTTCATCTCTCAGTAGCCAA CACCAGTGTCTTGCAATTTGGGAAATCCACTCTCGACATCACCATTATTGCTCAGGTACATAATAACTAATTTTTTATTT AAAAAGGAGAAAAATTGAATAAAGAAAAACATTCCAAGGGGACAAACCTATCCCTGGTGAGGGAAAAGATACAACAAAAG AGCAAGAGTCGAAAGACAAAAGTACAAGTTACAAGAAAGTAAACATAATATCTAATTATATTGTAATGTGTTATATATAA AGAATGCATCAATGAATTGTTTGGATCATGAGAAAACAAATCAGAGTACCATATTTATTTACTAATTAATTGCATTCATG TGTTATGATCGATTAAGATTAAAACTCTAAGTTATATTTTTTTGGGTAAGCCAAATTTATATTAGATAATGCACAATGAG TGCTTGTGACTTCTCAGAAAAGTAGCATGACATTTTTAAGTAGTCATATATGATTATTAAATAATTGTTAAATTATTTTA ATCTTAATAATTTATTATTGAATTTAACGGTTAAGATTAAAATAATTTAACAGTTATGATTTATTTATTTTATATTTTCG TATAAAATGAGTATACTCATGGATTCTGATTAGCCATATATGCTACAGATGGGGGATGAATACAACATGACAGTCGATGA ACTAGTCAAAACCCTGAGAGTAGCTATCTTGACTCAGTAGCATGTCTACGTACGTATGGAATAAGTACTGTACATAGATG GCATCTTCATCTTCAAATTCATTTATGCTGTTGCACTCATGTCAATTCTTGTGTATTCTTCTAGTTTCTGGCATCAGCTA TAATCTAACTTGGTAGTTATGTTTGCTTTAGCATTTAGATGAATTTTCTATGAACTTCTACTATGTATTATGGTTTTTTT TTTTTGACAGAACTATGTATTATGGGTTGATGCACCACTTCTGCGTCCTTTTAATGCATTTCTTAGCTTATGAAAAAAAA AACAAATTAGCATGTGATTCTGTTTTTTATTTGAAATTATTGTAATTCTGTTTTTAAGTTCAACGTACTAAAGTGCACCA ACTTAGTTAAGTCATATGAAAATAACTCAAGAAAATTAGATAGTGTTTAAGAGTAGATGTTCTGTTTGGGTGCACATTGT AAGGCCCAAGTTTTAACGTTTTTGGATAAGTGAATAAAAT
CDS sequence (LotjaGi3g1v0353200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGAGTCAGGGGAAAATTGGCCTTGTGATCATTCTGTATTGGAAGTTGGTGGCGGTGGTGATGATGACGACGTTAA GGATTTATGTTTTGAAGATGAATTTATTGGTGATGATAATGATGATGGTCATTCTTTTGCTGAGGAGACTGTAGATCCCT TGACAGACAGAAAGGAGAGACAGCGGGAACTCTCTGAGAAATTGCTTGCACTTTCAGCCACCATACCTAGCATGAAGAAG ATGGACAATACTTCGATCCTGGACAAAGCTAGCAACTACGTGAAACAACTTCAAGAACGTGTGAGGGAGCTAGAACAAGA AGTTGATCAATCCCACATTCGTAGCAACAAAGGCACCACCTCTTGCGAAGTGAACTCTGAAAATTACCGTACTGGTGGAA GAACAAATGAAAATTTTCCCGAGGTGAGAGTGAGAGTGTTACAGAAGGAAGTAATGGTTATAATCCATTGTGAAAAACAA AAGGGAATCATGCTCAAAATACTCTCTCATCTTGAAAATCTTCATCTCTCAGTAGCCAACACCAGTGTCTTGCAATTTGG GAAATCCACTCTCGACATCACCATTATTGCTCAGATGGGGGATGAATACAACATGACAGTCGATGAACTAGTCAAAACCC TGAGAGTAGCTATCTTGACTCAGTAG
Protein sequence (LotjaGi3g1v0353200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVESGENWPCDHSVLEVGGGGDDDDVKDLCFEDEFIGDDNDDGHSFAEETVDPLTDRKERQRELSEKLLALSATIPSMKK MDNTSILDKASNYVKQLQERVRELEQEVDQSHIRSNKGTTSCEVNSENYRTGGRTNENFPEVRVRVLQKEVMVIIHCEKQ KGIMLKILSHLENLHLSVANTSVLQFGKSTLDITIIAQMGDEYNMTVDELVKTLRVAILTQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 44 | 219 | 176 | 1.3E-74 | – | |
| PANTHER | 44 | 219 | 176 | 1.3E-74 | – | |
| ProSiteProfiles | 48 | 97 | 50 | 9.655 | ||
| SMART | 53 | 103 | 51 | 4.6E-5 | ||
| Gene3D | 56 | 124 | 69 | 2.6E-8 | ||
| SUPERFAMILY | 58 | 115 | 58 | 5.5E-11 | ||
| CDD | 59 | 102 | 44 | 3.15068E-5 | ||
| Coils | 87 | 114 | 28 | - | – | |
| MobiDBLite | 109 | 134 | 26 | - | – | |
| MobiDBLite | 113 | 134 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0353200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…