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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0355100 |
| Transcript ID | LotjaGi3g1v0355100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin system component CUE protein; TAIR: AT5G32440.1 Ubiquitin system component Cue protein; Swiss-Prot: sp|Q9NWM3|CUED1_HUMAN CUE domain-containing protein 1; TrEMBL-Plants: tr|I3S6N5|I3S6N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0355100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73677290..73681685) extracted from Lotus japonicus Gifu genome v1.2.
CAACGCGCTGGCAAGCACGTGAAACAGTCACCGTCTGGTCTCCATTTGCTCGCACTGCCCAAAGCACCGTATACACACAT ATATATAATCCTCCACCTTGATCATTCAACACTTTTTCCTCCGAATTCCACTACAATCTAACCCTCGCGAAAACCCACCC CTTCCTTCTCCGTAAACCCTAACCCTAGCATCTTCTTCAAATTCAATTGCAGTTTGCTGCAAATCAATCGATCGAGGAAC GGCGAAGACAGACAGATTCATTGATTGATTGATTGAACGAACGAACGAACCATGTCTGCTGCTGTGTGCGGAGGCAAGAG ATCTTTCTTCGAAGAGCTTCCTCCTTCTCCGCCACTCGCTAAGAGGATTCGTTGCTCTTCCTCTACCTCCCCCATTCGAT TACCTCCTCATTCTCTCATCGACCAGCTCCGCCATCTCTTTCCTCACATGGATCACCAGGTAGCCATTCAATTTTTGTTT TTGTTAAATTTCAAGTATATCAATATATGTATTTTATTTTCATTTCGTAGTTCGTTTTGATTTGAGAATTATATATTCTC AGTAATTTATTTTTTCCTTTTTTGATTTGGGGTTTCAGCTGATGATAATGATTGATGTGTTGAACTGTTGATTTGAAATG TGACTGATTAATTCCTTTTTACTAATCTTTCAAGATGGGCAATTGCTGGCTTAGAAATCATGTTCCTTTTTTAATTTGTG TGTTTGCTAGTGACTGAATTTTTTATGTTTCCCTTTGATTGGTCTTTATTTGTGATGTTTCCATGTTCTTCGAAAGTTGC AAATGATTGTTAGGTGACTGTTTTGTGTTTTGTTTTACCGGATTTCGCTTACGTGTTGTTGATATTTTACCTTTTAGGTT CTTGAGAGAGCTCTCCAAGAATGTGGCAATGATCTAGATGCTACCATCAAGAGACTGAATGAGCTGTACCTGGGAACTGC TGGTGGGAACTCGGGAACTGCTGAAGAATCGGAAGTTAATGTTAATGTAGATGCAGGTATGGTTGATATCAGCAGTTAAA TGTTTAGTAAACTAAGGTTGCAAATTGCTATTGGTTTGGCCTTTTCTGTTTCCATTTTTCATTGAGAATGGTTTCAAACT TTCAATGGAAATTGGAAGAGAAAATATGCTTGGATAATCATTGTCTTTTCACATGTTAGAAAAACAAAGCCGAAAGCTCT CGTTTTCGGATATGATGGAAACAATGGAAGCCGTTCTTTATCCGGCGGCATGTTTTAAATTCTAGTGTCATTTTTTTCCC TCTTTTTTCCATTTCTGTCATCTTCTCTCCAAACTCTCTCTTCGCTCTTTCGGTTTGTGGTGCGATTGCCTCTTCCTCTC TCTTTACCATCAAAAGCTACATCTGCACTCTGCTGTCAATCCACTCTTTTATACTCCCTCTCACCCACCCACCACCCACT CACATATACACTCTTTTTTGCTTTTGCAATTTTTCTGTGTCAGCTTTTCAATTTAGAAGCTAGCAGCAATATTGCAAATT GGATTCATAGATGGGATAAGGGTATGTAGATGTAGGATGATAAGAAGGTAAATAATTGGTGGCCTGATATGGCACTCTAT CCTTGGCAGTTGGCACTACATAAGTTTTGATCATGAAACCAACTGAGAATTTGACATGTTTTGAAGAAACTGTGCTAGGT AAATTGGAAGATGATCAGAATGTTTCTGCTTCTGAGAACCCGCCTGCTTCGGACAACCTTCCTGGAAATGGAGCAGAATG GATTGATTTTTTTGTTAGAGAAATGATGATTGCTACTAGCATTGATGATGCAAGAGCCCGCGCAGCTAGAATGCTGGAGG TTCTAGAGAAATCAATCAGTGCACGGGCAAGGGCTGAGGCAGCTGATGTTCTTCAGAAGGTATTTCTCCTTGAAAGTTTT AAGATTCGTGCTGTCAACCAAACTCTGATGTTTTGCATGTCATGAAGTGAAGGCCCTCTGTTAGGAGAAACACATGGCCG ATGACTATTGGACTAGTAGCAGTTGGAATGTTAGATGATTTGGGTGTTTTCAGACTGTATTGTTGAGTGAAATGTACTGT TAATTTGAGCTGAGGATTGTTCATCCTACATTTCTGATTTTACCAGTTTTATGTTACTTCTTTGGTTTCACTTGCTTATA TGTCGAGAATAAAATAATAGTGGGGGGAGAGGGCAGAACACCCTTTTTCTTAGACAATCTAATCTCTGGATCTTCTTTGA ATGATATGTCTGATATTCTATTTCTACTTTTTACTCAAGTAAAAAAGGTAGTGTTATTTTCCAAAATGAATAGTAGTCAG AATTCAGAAGTGTAATGCCTAGGCTGCATTTTTGCTGATATCTTTACTAGGATGGTTTCTTATTATCTATATGAGTTTCA GGTTTTAGGGGTTCCTGGACTACGGTCCTTGATTTTCGTGATGCATAGTTGACACACCCATGCTCATATATGCTGATATT CTGTCTTAGAGCGTAATTATTTTGGCATAAATACCTTGTTTCCCAGAGTTGAGATTGTAACTTAATTTTCGTGTGATCTC ATTTTTCAGGAAAATTTGATGCTAAAGGAACAAATTGAAGTGTTGATCAAGGATAAAAATTCCTTTAAAAATGCTTTTAA ATACCAGCGCGAACGGTATTCTGATTATGAGGAAAAGGTCCAAGAGCTGCAGCATTTGAAGCCGTTAGTGTCTCAATACC AGGAGCAGATAAGAACTCTTGAGGTTTGAGTCAATTTTATCCCTTTCATGTTCACTATAAAGTAGTTCACAGTTGGGGTA AAAAATTTATAATTTTCGTAATTTGATGTTCAATTTTTTAAGAAATTGGAAACTCAACTATAATCTACTTAAAACTTAAA ATCCTCTCCCTTCGTAAATTGAAATAGAAGTGAAGGAAGTGACGTGACTACATAAATTGTCGAAATGACTTAACGATGAT AACCGTGAAGATTTATGATCCATGCCCGAACCTGAAGCACATTTTTGTTAGGATACTGATTGCTGGAAATGCATCATTTA CCTTGCACTTCCGGGCATTTTCTCTCTTCAGGGTTGAGAGTTTACCTTATAATCTGCTTCATATAGGTTTACAAGTGAGT GTTGGAAGGTTCCCTTCTCTGGTCTTCTCTCGACCTCCTTCCTTTTGCAGTACCCCAACCCTAACTTGGGTGAAAAGGGA GTGAGGTCAATGGTCAATTATTGCATCTAAAAATAAGAAATCAAGTTATTGCATCTTAAAAAAATTTAATTCACCTATGG TAATTTGTCCATCGTTAGGTTCAGACATCCAGATTAGTTGGCAAGTGGTGGCTGGAAAAATCTGAACTCATGAATTCCAA GTTAAAGCTTTTGCACATTATAAATTGTTTTTATACATGCTAATGGAATCTGTATGTGGGTTTTTTGACAGGTGAATAAC TATGCTTTGACAATGTATTTGAAGCAGGCGCAACAGAGCAGCCCTTTTCCTGGGCATTTCCCACCTGATGTCTTCTAATG GAATAATATGTTGAATATCATAATAATGGCGGCATATATCAGCATTTGGTTGTTTAATTATGTTGTGTTTTTACTCCCAA AAATGTCAAGCGATGTTATAGTTTTCGTATCTTTTCATGGTCAAGGCATGGTTTGTTTCTCTAGTTCACGGGGTGATTTT ATCCCATCAACCCAGTATAGAATACGATAATTCATAATCATCTCCCCAATTTGCGTTTCCTTTCTGCATTTATCAGTTCT TGTTATCACTTGTGTACTGAGAATGTTAACGATCAGTATGGAACCACTCATAGTTGGATGGTTTTGATTAGTTCGCATAT TAAAATTTACCATGATATAAAAAAGTGGCGAGGGGTGGGATTTTTAAAGGTATTATCTTGTTTAGTTTAGATTTTTGAAG GGGAGAGGGGGTAATTAAATCCCCCAAGTTCAGTTTAGTACTTTATTTTCAACATTCTCACGTTGATGGCCGTAGCCCGT AGGCCTTTTCAAACGGTCTGACTTATTTTACACCCTCATCCCTCTCGTGTTTGATCTTTTGGCCACACAAAGTGGGTTTC TAGTCAGATAGTCTCCACTTCAGCTTCATAAAGGCAATCTTTGATAACGAAAATGTTTTAACTTTATAAATGTTATTGAT TTTTAAACACATTTATCTCTTTTATTTACAGATATTTACATTTGAAATAGATATACTTTTTTTTTGTTACAACAGAAAAT TAAAGACAACGAAACTAAACTAAAGCTAACAGATCCCTCAGAAGAAGGTTCTCTAACTCCAAAGGAGGCTCCTCTATCAA GCTAAAGGGCGTAGAAGGTGTAGTGGCACCTTTCATGGCTAACCAGTCCGCTGATGCATTTCTCTGCTTATGTGCA
CDS sequence (LotjaGi3g1v0355100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGCTGCTGTGTGCGGAGGCAAGAGATCTTTCTTCGAAGAGCTTCCTCCTTCTCCGCCACTCGCTAAGAGGATTCG TTGCTCTTCCTCTACCTCCCCCATTCGATTACCTCCTCATTCTCTCATCGACCAGCTCCGCCATCTCTTTCCTCACATGG ATCACCAGGTTCTTGAGAGAGCTCTCCAAGAATGTGGCAATGATCTAGATGCTACCATCAAGAGACTGAATGAGCTGTAC CTGGGAACTGCTGGTGGGAACTCGGGAACTGCTGAAGAATCGGAAGTTAATGTTAATGTAGATGCAGGTAAATTGGAAGA TGATCAGAATGTTTCTGCTTCTGAGAACCCGCCTGCTTCGGACAACCTTCCTGGAAATGGAGCAGAATGGATTGATTTTT TTGTTAGAGAAATGATGATTGCTACTAGCATTGATGATGCAAGAGCCCGCGCAGCTAGAATGCTGGAGGTTCTAGAGAAA TCAATCAGTGCACGGGCAAGGGCTGAGGCAGCTGATGTTCTTCAGAAGGAAAATTTGATGCTAAAGGAACAAATTGAAGT GTTGATCAAGGATAAAAATTCCTTTAAAAATGCTTTTAAATACCAGCGCGAACGGTATTCTGATTATGAGGAAAAGGTCC AAGAGCTGCAGCATTTGAAGCCGTTAGTGTCTCAATACCAGGAGCAGATAAGAACTCTTGAGGTGAATAACTATGCTTTG ACAATGTATTTGAAGCAGGCGCAACAGAGCAGCCCTTTTCCTGGGCATTTCCCACCTGATGTCTTCTAA
Protein sequence (LotjaGi3g1v0355100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAAVCGGKRSFFEELPPSPPLAKRIRCSSSTSPIRLPPHSLIDQLRHLFPHMDHQVLERALQECGNDLDATIKRLNELY LGTAGGNSGTAEESEVNVNVDAGKLEDDQNVSASENPPASDNLPGNGAEWIDFFVREMMIATSIDDARARAARMLEVLEK SISARARAEAADVLQKENLMLKEQIEVLIKDKNSFKNAFKYQRERYSDYEEKVQELQHLKPLVSQYQEQIRTLEVNNYAL TMYLKQAQQSSPFPGHFPPDVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 262 | 262 | 4.6E-145 | – | |
| PANTHER | 1 | 262 | 262 | 4.6E-145 | – | |
| Gene3D | 30 | 84 | 55 | 3.9E-7 | – | |
| ProSiteProfiles | 38 | 81 | 44 | 11.965 | ||
| CDD | 40 | 76 | 37 | 1.78178E-10 | – | |
| Pfam | 40 | 78 | 39 | 5.7E-9 | ||
| SUPERFAMILY | 40 | 83 | 44 | 7.02E-9 | ||
| Coils | 171 | 191 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0355100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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