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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0355600 |
| Transcript ID | LotjaGi3g1v0355600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ethylene-dependent gravitropism-deficient and yellow-green-like 2; TAIR: AT1G17870.1 ethylene-dependent gravitropism-deficient and yellow-green-like 3; Swiss-Prot: sp|Q9LMU1|EGY3_ARATH Probable zinc metallopeptidase EGY3, chloroplastic; TrEMBL-Plants: tr|A0A0S3T7R6|A0A0S3T7R6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0355600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73740715..73746350) extracted from Lotus japonicus Gifu genome v1.2.
TTCATTTTAACCTATCATCTTCATCCCCAATCATCTTCTCTCCACCATATGTTGATCATCTTCCCCTGTAATATAGCATC AACGAATTTCAGCCCCAAAATACATGTTTATAACCTGTCAAAAAAAAATACATGTTCACAAGATAAGATTCAACATATGC CCTCCATCAATATACCAACCGAAAATTAATTCATCATCTGCCATCAATATCTCCCATTCTCCTCCATCCCGTTTTTCAAT TTTACCATCTTCATCTGTCATCAACCCTCATCAACGCTCTATCATCTTCAAGCAACAACCAGATCCAACCCCAAACCCAT AAATCAGATCTGTCGCAGTAAGGCTTTAGCAACCCAGATCGAACGGAGAGTTGATGGTGCGAGCTTAGTCGGTGGCAGGA GAAGCTTTAGCGAAGGTGCGAGCTTGGTCGGCGCTAGATTCGTCATCGCTGCGCTCCATCACTCCCCCCCCTCTTTCTAT CTCTTCAAGTCTGTGGGTTCTCCATGAGCACCGGGGAACCATTTGGGTGATGGGTGATGATGGGTTTGGTGAACTGAGCC AGAAATCCCAGATCGGAACTCAGAAACCCCCAGATCGGAACACAATCGACATTGAGCCACCACCCTAACCACCTGTGAAC CCTAGAAACCCCAATAAACAAGCACCGGAGAAACCCTATTCCAAAATCCCCACCCAGAACATAACCGAGAAGAAAATAGA TTATCTTCATCACCCATACCCACCATAGACCCCATATCGGAAGAAGACATCTTCATCTTAGAGAGGAGATTTTTTGAAAA GAGACAAAAAAGAATGAAGATGAAGAGAGGAAAAGGAAAACATCTTTGTTTATTAAAGTTACATATATGAAAGAGAGGAA GAAGAATGAAGATGAACCCAGGAAAAAGAATTTATTTTTACTCAACTTTTTATTTTATCTAATTTTTCGTTTTTCAGAAA AAAATAAATTTATTTAAAAAATATATGAAATAACCGGTGAAATCCACAATAGAGGGTTAAAAGGGGGTTGTGCACATTTG CACAACTTTTTTCTTGTGTACCATAGGGGACCCTGAATTTCTGGTTTGGATTTGAGTAATGTTTATGTTGTTTCTGGGTT TGAGGGTATGTTGTTTTGGGATTTTGAAGAACATGGTGAAGAGAAGATGATTGGAGATGAAGATGATGGGTTAAAATGCA ATTTTAACTTCTTTTTTTGTTTTAGTCCCTCTTGCATATTCCACGTGTAATTAAAATAATTCAAAACTGGCTAAATATCT GACATGTCAGCGGTCACCTACAAGCTGGCATGCCACATTAACAGTCAAAATGGTCAAAGGATGGAAAACAAACGATTTAC TAAGTAAAGGGACAGAAACCATCAAAAATTTAATTGAGGGATGGAAACCAAAATTTCGCTATAGTTCAAGGACGAAAAGA ATATTTAACCCAAGTAAAAATTAATAAATCGTTCATGTTTAATGTATCTCAGTTTATGTATGCACCAACTATTGAACAGT TTTTGATGTATAATCCATATTTACATCTTTATTCAAATGATACTCTTTCATGTGAGAGGGACATGTACCTCAAAAAATCT GAAACCACACAACACAAGACACCATTGTGTTTGTGTGTTGGCTCCTGAAGCTTCTTTGAACTTCTCCACCCTTCTGAAAG CACTTCCAAAAGCAAGAACTTCCACCATGATCATCATCATCATTTCCTTCACCAGTCCTCAACATTCCCCAAACCAATTC AATGGCGTTACTTCCCTCTCTTTCTTATTCTCCCTCCTTCAACCCCACCAACACAATCACAAAAAGTTTCATTTTTCCAC TTCCAACCAACACTCTCACTCCCAAAAAACGCATTTCAATTTCTCCATGCAAGTTCTCTCTCAAAGACCACGACCACCAT GAAACTGAATCTTCTTCTAGGATTTCCGTTGCTTCTGAGAAACCCAAAACAGAGGAACATTCTGATTCTGAGAAACAGCA ACAACAACAAGAACAACAACAGGAATTGGATTGGAAGACAGATGAGGAGTTCAAGAAGTTCATGGGTAACCCTTCAATCG AAGCTGCCATAAAGCTCGAGAAAAAGAGGGCTGATAGGAAGCTCAAGGAGCTTGACAGGGAAAGCAACACCAGTAACCCT TTTCTTCGTCTTTTCAATGCCTTAGTTCGTGATAATCTGATCAAGGAAAAACAGAGGCTCCAGAAAGCAGAGGAAACTTT CAAATCTCTTGATCTTAACAAGGTAGGTAGCTAATAATTAAATTAATAATTAATCATACTCACACAATTTGTAGAAATGA TACCTAAGGTATATTAGATAAGGAATTAAAAATGGAAGTATCTATTAAAATTTTCATTTTTCATTTTTTTAGTATCTATT TGAAGGTGTGATCATATTCATACTCATGCTAGTTGGAGTTGAATACCATTCATGTTACTATTTGACTTGTGCAGTTAAAG AGTTGCTTTGGGTTTGACTCATTTTTCGCCACGGATGTTCGAAGATTTGGAGATGGAGGAATTTTCATTGGGAATTTGAG GAGACCTATTGATGAGGTCATTCCCAAGTTGGAGAAGAAGCTCTCTGATGCAGCTGGTAGGGAGGTTGTGGTGTGGTTCA TGGAAGAAAAAACAAATGACATTACTAAACAGGTAAATTTGGCTTTGAAACCTATGCTATTTTGTATAATACAACTTATC TGATTGCTTTTCTTTTGCTGATTTCATTTGATGATGCCTGGATATATAGTTTGTCAAACATATGAATGATTCTTAAATTC TTGGTTTCTTAAAACACATACATTGTTTCTATTACTATTATTATTTTTGGCTTTATATTGTTTTGTTTTTCATATATTGC TTTAAGAAAATGTTGTAGAGACTAGAGATGCTTTTGCTAGAATGGTCATTACTAAAGTAGTATATATTCAGGCTTGTGTG GTGCAACCCAAAGCAGAAATGGATCTCCAATTTGAGTCAACTAAGCTGAGTACTCCTTTTGGTTATCTCAGTGCAATTGC ATTATCCGTCACCACCTTTGGAACAGTTGCTTTGATGAGTGGCTTCTTCCTTAAACCTGATGCAACATTTGATGATTATC TAGCTAATGTTGTGCCTCTATTTGGTGGATTCTTATTTATTCTGGGAGTTTCTGAGGTAATTAATAGATTGATTTTCCAC TTCTGTTTCTGATTTATTGTGCTCTTATTAGATTATCTCCATCCAATTAATATATAACTAGTTTAGCTTTTAATAAGCAA GAAATTGCCCAAAAACATGCCAAAAGAAAGTATTCAAACTTGGAAGTTTTCTTGGTACATAAATTGTAGTTTACTTGATC AACATATCATCCTCATGGATATAGTGTGTTCGGGCAACACTCTAACAGACGTTTTCAATGAAGGAAGCCAAATTTGGCAT TCCAAGGCATTAAACGTCAAAGTAGCTCCTGGCATGGAGTAGTGTTCCATTGAACGTGATCTGAATTCGTACAAGCTCAC AATGGCAGTTGCCCAGTTTCCTATATTTGATGTGTGTGTGTGATTTCATGCTCATTATCTCAGAGAGGTTTTTGTGGTTA CTGTTTTTACAACTGTATTACATGCATTATAATAGTCATCATTGACATGTAATTTGTTCTATGGTTGTGTTCTTTTCATT GTGTAGATAGCCACGAGGGTAACAGCAGCTCGCTATCGTGTCAAACTCAGCCCTTCTTTCCTGGTGCCATCTAATTGGAC AGGGTGTTTAGGAGTGATGAATAATTATGAATCCCTCCTCCCCAACAAGAAAGCCCTTTTTGATATTCCTGTTGCCCGTA CTGCTAGTGCGTATTTGACTTCATTAGTGCTCGCTGTTGCTGCATTTGTGGCCGATGGAAGCTTCAACGGGGGCGACAAT GCATTGTGAGTGGTGTATACTCTCCTGTCCTAATTAATGCTTTTTCTTTGGTCAGAAACGGAAGGAAAGGAAACCAAGCT TTGATTAATTGTCAAGTGTATATGGTTTGCCAAGACCACAATTGTATGGTCAACAAATAGCTTTCGTCTAAAGGCCTAAG CTAAAATACATGTCTAGTAATACATGGCTATGAAATGTATTACTAGATATATAGTGTGATGGTGGTGGCATTGATCATCC GAGTTCCGTGCATATCAATTCATAGCGAAAGCTAATGATAATATAAATAGAAAATTGTTTCTCATGTTTCGACATTCTGC TGCTTTATTTGCAGGTATATACGGCCTCAGTTTTTCTATAACAACCCCTTGCTTTCTTTTATCCAATATGTTATTGGGCC TTACGCGGATGATCTTGGAAATGTGTTGCCCTATGCCGTGGAAGGTGTTGGAGTTCCAGTTGATCCACTTGCATTTGCTG GCCTCTTAGGTGGGTTTGCTGTGATTTCTATTTTTGTCCCTCGTTTTGAAAAGAATGATCCAACATGAAAATCTAATCTA AAGATTTAACAAAATTTAAACGTCCAGGTTACTTGTAAGACAGCAGCTGTTCACACCAGATTTTCTTAAAATTAATTAAG TTCATGAATATGGTGAAATTGGATGATCCATCAGTTTTCACCTCTATGGTAATTAGAAATTGGTTCTAATCCTTGTGTGT ATTAATTAGTCTTTTAGATGCCAACATAAAAGTTACACCTTTGAATTTTTACAATTTTTTTCTTGGCAAATTCATAGAAT TCAGAATAGACCTAACTCTAACCAAAGCTAGCTCAAGGTTGAAGATTGTTCTACCCTATACAACTTACAAGTACTTATTT ACATGATCTTAACTCTGGAAATCTGCACATGCCCATATTTGGTTGACACAATAAACGGATTAGGATATAGTAGACTTTGT ACTATCTTAGAATTCGGATTAGGTGTAACCTACCCCCAAAACTAGTTTAGGTGTGAGGATTGTTCTATCCTATGTAATGA CTTATTTAGATATACATGTAGTCAATGTGAGCCTTAGCACAAATTTTAAGGCCTGAACTTGTGGGTGAATGATAATTTAT GGGGAGAGAAATTGGTTCAGAAAATGAAACATGCTTAAACAATTTGATTGTCGTCATGCAGGGATGGTGGTGACTTCATT GAACTTGTTGCCGTGTGGGAGACTAGAAGGAGGGCGAATTGCTCAAGCCATGTTTGGCAGAAGCACTGCTACGCTGTTAT CTTTTGGCACATCATTATTGCTTGGAATTGGTGGCCTCAGTGGTAGTGTTCTGTGCTTGGCATGGGGATTGTTTGCAACA TTCTTTCGTGGTGGAGAAGAAGTACCCGCGAAAGATGAGGTCACCCCACTAGGGGAAAGCAGATATGCTTGGGGTATTGT CCTTGGCCTTATATGTTTCCTCACACTCTTCCCGAATGGTGGAGGAACTTTCTCCAATTCATTCCTCAGTGATCCATTTT TTAGGGGCGAAATGTAAATAATGATCCGGCTGTAATTATGTGTATCAGTAGATGTCTGTAATTATGTATTTTCTTTTTTC ATTTTACATGTTTTCACAACCACGGCTAGTAGCTAACTATTTTCTCTAAGATTTTTCACCATGTAAGTTTGAGTTAATTT TCATATATTTATACATATTTTGTGGATGATCACCCG
CDS sequence (LotjaGi3g1v0355600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTACTTCCCTCTCTTTCTTATTCTCCCTCCTTCAACCCCACCAACACAATCACAAAAAGTTTCATTTTTCCACT TCCAACCAACACTCTCACTCCCAAAAAACGCATTTCAATTTCTCCATGCAAGTTCTCTCTCAAAGACCACGACCACCATG AAACTGAATCTTCTTCTAGGATTTCCGTTGCTTCTGAGAAACCCAAAACAGAGGAACATTCTGATTCTGAGAAACAGCAA CAACAACAAGAACAACAACAGGAATTGGATTGGAAGACAGATGAGGAGTTCAAGAAGTTCATGGGTAACCCTTCAATCGA AGCTGCCATAAAGCTCGAGAAAAAGAGGGCTGATAGGAAGCTCAAGGAGCTTGACAGGGAAAGCAACACCAGTAACCCTT TTCTTCGTCTTTTCAATGCCTTAGTTCGTGATAATCTGATCAAGGAAAAACAGAGGCTCCAGAAAGCAGAGGAAACTTTC AAATCTCTTGATCTTAACAAGTTAAAGAGTTGCTTTGGGTTTGACTCATTTTTCGCCACGGATGTTCGAAGATTTGGAGA TGGAGGAATTTTCATTGGGAATTTGAGGAGACCTATTGATGAGGTCATTCCCAAGTTGGAGAAGAAGCTCTCTGATGCAG CTGGTAGGGAGGTTGTGGTGTGGTTCATGGAAGAAAAAACAAATGACATTACTAAACAGGCTTGTGTGGTGCAACCCAAA GCAGAAATGGATCTCCAATTTGAGTCAACTAAGCTGAGTACTCCTTTTGGTTATCTCAGTGCAATTGCATTATCCGTCAC CACCTTTGGAACAGTTGCTTTGATGAGTGGCTTCTTCCTTAAACCTGATGCAACATTTGATGATTATCTAGCTAATGTTG TGCCTCTATTTGGTGGATTCTTATTTATTCTGGGAGTTTCTGAGATAGCCACGAGGGTAACAGCAGCTCGCTATCGTGTC AAACTCAGCCCTTCTTTCCTGGTGCCATCTAATTGGACAGGGTGTTTAGGAGTGATGAATAATTATGAATCCCTCCTCCC CAACAAGAAAGCCCTTTTTGATATTCCTGTTGCCCGTACTGCTAGTGCGTATTTGACTTCATTAGTGCTCGCTGTTGCTG CATTTGTGGCCGATGGAAGCTTCAACGGGGGCGACAATGCATTGTATATACGGCCTCAGTTTTTCTATAACAACCCCTTG CTTTCTTTTATCCAATATGTTATTGGGCCTTACGCGGATGATCTTGGAAATGTGTTGCCCTATGCCGTGGAAGGTGTTGG AGTTCCAGTTGATCCACTTGCATTTGCTGGCCTCTTAGGGATGGTGGTGACTTCATTGAACTTGTTGCCGTGTGGGAGAC TAGAAGGAGGGCGAATTGCTCAAGCCATGTTTGGCAGAAGCACTGCTACGCTGTTATCTTTTGGCACATCATTATTGCTT GGAATTGGTGGCCTCAGTGGTAGTGTTCTGTGCTTGGCATGGGGATTGTTTGCAACATTCTTTCGTGGTGGAGAAGAAGT ACCCGCGAAAGATGAGGTCACCCCACTAGGGGAAAGCAGATATGCTTGGGGTATTGTCCTTGGCCTTATATGTTTCCTCA CACTCTTCCCGAATGGTGGAGGAACTTTCTCCAATTCATTCCTCAGTGATCCATTTTTTAGGGGCGAAATGTAA
Protein sequence (LotjaGi3g1v0355600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALLPSLSYSPSFNPTNTITKSFIFPLPTNTLTPKKRISISPCKFSLKDHDHHETESSSRISVASEKPKTEEHSDSEKQQ QQQEQQQELDWKTDEEFKKFMGNPSIEAAIKLEKKRADRKLKELDRESNTSNPFLRLFNALVRDNLIKEKQRLQKAEETF KSLDLNKLKSCFGFDSFFATDVRRFGDGGIFIGNLRRPIDEVIPKLEKKLSDAAGREVVVWFMEEKTNDITKQACVVQPK AEMDLQFESTKLSTPFGYLSAIALSVTTFGTVALMSGFFLKPDATFDDYLANVVPLFGGFLFILGVSEIATRVTAARYRV KLSPSFLVPSNWTGCLGVMNNYESLLPNKKALFDIPVARTASAYLTSLVLAVAAFVADGSFNGGDNALYIRPQFFYNNPL LSFIQYVIGPYADDLGNVLPYAVEGVGVPVDPLAFAGLLGMVVTSLNLLPCGRLEGGRIAQAMFGRSTATLLSFGTSLLL GIGGLSGSVLCLAWGLFATFFRGGEEVPAKDEVTPLGESRYAWGIVLGLICFLTLFPNGGGTFSNSFLSDPFFRGEM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 255 | 255 | - | – | |
| PANTHER | 47 | 555 | 509 | 5.1E-300 | – | |
| PANTHER | 47 | 555 | 509 | 5.1E-300 | – | |
| MobiDBLite | 48 | 79 | 32 | - | – | |
| MobiDBLite | 48 | 89 | 42 | - | – | |
| Coils | 107 | 127 | 21 | - | – | |
| Coils | 139 | 166 | 28 | - | – | |
| Phobius | 256 | 277 | 22 | - | – | |
| TMHMM | 258 | 280 | 23 | - | – | |
| Phobius | 278 | 288 | 11 | - | – | |
| Phobius | 289 | 310 | 22 | - | – | |
| TMHMM | 293 | 315 | 23 | - | – | |
| Phobius | 311 | 321 | 11 | - | – | |
| Phobius | 322 | 342 | 21 | - | – | |
| Phobius | 343 | 361 | 19 | - | – | |
| TMHMM | 355 | 377 | 23 | - | – | |
| Phobius | 362 | 382 | 21 | - | – | |
| Phobius | 383 | 393 | 11 | - | – | |
| TMHMM | 394 | 412 | 19 | - | – | |
| Phobius | 394 | 412 | 19 | - | – | |
| Phobius | 413 | 431 | 19 | - | – | |
| TMHMM | 427 | 449 | 23 | - | – | |
| Phobius | 432 | 450 | 19 | - | – | |
| Phobius | 451 | 470 | 20 | - | – | |
| TMHMM | 470 | 501 | 32 | - | – | |
| Phobius | 471 | 501 | 31 | - | – | |
| Phobius | 502 | 520 | 19 | - | – | |
| TMHMM | 521 | 543 | 23 | - | – | |
| Phobius | 521 | 539 | 19 | - | – | |
| Phobius | 540 | 557 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0355600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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