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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0356700 |
| Transcript ID | LotjaGi3g1v0356700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT3G09510.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151QYZ6|A0A151QYZ6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0356700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73859983..73861956) extracted from Lotus japonicus Gifu genome v1.2.
ATATTGAATTAAGAGTTGCAAGAGAGACCATTGCAATCGCCATCTCGCGTTAGCCTTCTGTGATCTACTGAGGCCAACCA TGCATCAACACCTGGTTTCGGGAACCATGGGCATATATTGTCGCCATATTGCACTTGCTAATAATGTAGCAGGCTTCTGT TGCTAGTGGGTGGAAAGTGGAATGCGACATGAGGTATGAGATCATGTAGAAAAATAATGGTAGATATTCTTTGGTATATT ATAGAAAAATGGTTTTTCACACCAAAATTTAACCCTACACCTAGTAAGAGATAAGAATACACGAGAAGGAAATGAGACAT GATGAGAAAAAAATAAGAGAGGAAAAAGGTCAGTGGAAATTAAATAGCAGAAAAAAATATGTGAATGTATTAAAATTATA AATTATAAACGTGAAAAGAGATATATAAAGTGGGTTCGGGTAAACTGGTTAATTTAGGACTTAAGGCAAGAAGCACTTGG TATTAGGATGAACGACCTCTTTATATCGAAGTAATAGCCAATCAATCTGCAGAATATGGACATTGGTCAACATTGCAAGT ATAACGATAGTTTTTTAGGAATAAAAGGGTATTATAAATTACTCCATCCGTTTCAAAATAACTGTCAACTTTAGAGAAAT TTTTTGTTTCAAAATAATTGTCCACTTAAAATAGGAAGAGTTATGACTCATGCTCACTTTTATATGTTTAGTCTTTTTAG GTTGTGACGACGTGTGAACACTGGCAACAACTTTGACGACGCTTCAGCAAAACTCTTCCTAAGCCCATAGATATAGTGTT ACTTCAGCAAAACTCTCTTGCATGGCCTCTTCTTGGACACAAACACTATATGCTATTGTAAAGGAGTTGGGGGAGTGGAG ATATGGCAGGTGGGAGTGGAATTTTAAATGGAGAAGGGCGTTGCGTGGGAGGGAGGAGTTGTGGTTTGATACCCTGTTGA ATATTATTAATAATGGTAGTTTGCAGGATGGGAGGCCGGATAGATGGTTGTGGGAGCCAGGGGAGGAGGGTGCTTATTCA GTTAACTCAGCTTATTCTTTTTTGCAGGTGAGTGATTTAGGAGTGTCTGACATCGATTTTCAATCAATCTGGTCTGCATT TGCTCCCTCAAAGGTCAAAGCTTTTGCTTGGTGCATGCTGCTAAATCGGATCCCGACCAAGGCGAATTTAAGGAGGAGAG GTGTCATTCCGGCAGAGGGGGATGTATTATGTCCTTTTTGTAATCGTATAGAAGAGTGTTGTGATCATTTGTTCTGTACG TGCTCACGGTCTTTTGATGTCTGGAATGCTGTCTATCGGTGGTTGGGGTTTGAAACTGTATTGCCAGCTTCATCAGAATC ACTTTTTAGTCAGTTCTCCTTTGTTGGCAGAAACAAGAAACAACGACTTGCTGAGATAACAGTGTGGATGGCGTCTTGCT GGTCCTTGTGGATAACTCGTAACAGTGTTATTTTCAAGGATGGTGTTTGGGACGGTGGTTTGGTTGTGGAATTAATCCAG GTTCGAACTTGGCATTGGTTAAAAGAGAAAGTGAGGGAGTTTCATTATTCATTATATGAATGGAAGTCAAATCCGATCAT ATGCCTCTCTTCTCTTTGAATTTTGCCAGGGACATGGGTTTTTGGCTATTGTTCGTGGTACGTTTGGAGTGGAGGTTGGG TTGTATTTTTTCTCTTCTGCTGTGCATTCTTGGCGTTGGACGTCTGTTGCCGTGGTTGCTTTTTGGGTTTGTATGTTGCT GCTATAAGTTGGGGCATTCTTGGTTTATTTGGAGTAATAGTTTAAGTTTGTAAGGGAACTTAATCTGGTTTGGATTGTGT AGATGGGTTCTTTAAACTTTGTTTATTTTTTTCTTTCTTTCTTTATTTTTCTTTCTTTCTTTTCTTGTATTTGGGTTTAG CATCCCTTGTGCTATTTTTAAATACAATTCTTTGGCTTAAAAAAAAAAAAAAAA
CDS sequence (LotjaGi3g1v0356700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCTTCTTGGACACAAACACTATATGCTATTGTAAAGGAGTTGGGGGAGTGGAGATATGGCAGGTGGGAGTGGAA TTTTAAATGGAGAAGGGCGTTGCGTGGGAGGGAGGAGTTGTGGTTTGATACCCTGTTGAATATTATTAATAATGGTAGTT TGCAGGATGGGAGGCCGGATAGATGGTTGTGGGAGCCAGGGGAGGAGGGTGCTTATTCAGTTAACTCAGCTTATTCTTTT TTGCAGGTGAGTGATTTAGGAGTGTCTGACATCGATTTTCAATCAATCTGGTCTGCATTTGCTCCCTCAAAGGTCAAAGC TTTTGCTTGGTGCATGCTGCTAAATCGGATCCCGACCAAGGCGAATTTAAGGAGGAGAGGTGTCATTCCGGCAGAGGGGG ATGTATTATGTCCTTTTTGTAATCGTATAGAAGAGTGTTGTGATCATTTGTTCTGTACGTGCTCACGGTCTTTTGATGTC TGGAATGCTGTCTATCGGTGGTTGGGGTTTGAAACTGTATTGCCAGCTTCATCAGAATCACTTTTTAGTCAGTTCTCCTT TGTTGGCAGAAACAAGAAACAACGACTTGCTGAGATAACAGTGTGGATGGCGTCTTGCTGGTCCTTGTGGATAACTCGTA ACAGTGTTATTTTCAAGGATGGTGTTTGGGACGGTGGTTTGGTTGTGGAATTAATCCAGGTTCGAACTTGGCATTGGTTA AAAGAGAAAGTGAGGGAGTTTCATTATTCATTATATGAATGGAAGTCAAATCCGATCATATGCCTCTCTTCTCTTTGA
Protein sequence (LotjaGi3g1v0356700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSWTQTLYAIVKELGEWRYGRWEWNFKWRRALRGREELWFDTLLNIINNGSLQDGRPDRWLWEPGEEGAYSVNSAYSF LQVSDLGVSDIDFQSIWSAFAPSKVKAFAWCMLLNRIPTKANLRRRGVIPAEGDVLCPFCNRIEECCDHLFCTCSRSFDV WNAVYRWLGFETVLPASSESLFSQFSFVGRNKKQRLAEITVWMASCWSLWITRNSVIFKDGVWDGGLVVELIQVRTWHWL KEKVREFHYSLYEWKSNPIICLSSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 26 | 262 | 237 | 2.6E-34 | – | |
| PANTHER | 26 | 262 | 237 | 2.6E-34 | – | |
| Pfam | 72 | 161 | 90 | 2.6E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0356700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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