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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0358400 |
Transcript ID | LotjaGi3g1v0358400.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Peptide deformylase; TAIR: AT1G15390.1 peptide deformylase 1A; Swiss-Prot: sp|Q9FUZ0|DEF1A_SOLLC Peptide deformylase 1A, chloroplastic; TrEMBL-Plants: tr|V7AU53|V7AU53_PHAVU Peptide deformylase; Found in the gene: LotjaGi3g1v0358400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:74038230..74041799) extracted from Lotus japonicus Gifu genome v1.2.
GCCCAGCTGGGTATGATTGAGTGGCAAAATGTTGCTGGGTCCAAAATCCCCATAACCTTAGCCTAACCAACCCATAACAC TCCCTATGGTGGTGGTGAAATTTGCATAACAAAAAAGAAGAAGAAATCTGTAGAATAATCTGCAGAATCCAGAGGAGAAA GCAAGAAAAAAGGCCATGGAGGCCTTGCACATGCAGCGTGTACTTCCCATATCTGCTGCCCAAAACACTCTCTTTACGCG CCCAACTGCCACCCCATTATCTGGAGTTGCAATGGCAAGGCCACCATTGAGTTTAAGCTTATCATCTTCTTCTCAAGCTG CCGCTGCCACTGCCACTGCAAGAGCAGGGTGGTTTTTGGGTCTAACAGCAGATAACAAGAAGATGAAATTGCCTGACACT GTCAAAGCTGGTGACCCTGTTCTTCATGAGCCTGCCCAGGAAGTTAATCCCAGTGAGATAAAGTCGGAGAGAGTGCAGAA GATCATTGATGACATGATCCGGGTCATGAGGAATGCTCCTGGGGTTGGTTTAGCTGCTCCCCAGATTGGAGTTCCTTTAA GGGTCAGTCTCATTCTTGGGGATTTTGTGTTTTCTGGCTTGCCCATCTTCAAATTTTGTGTCTTATCCTATCTTACTCAA TCTTGTAGCTTAAATTGCTTTCTCTATGTGAGTGTTTGTGTACTACTATCATTATTTATTGTTGTTGTTGTTGTTGTTGT TTTAGTGCATGTGTGTTACTAAAAGTGGCAGCTACATATACATTGTCATTTTTGCAAATAACAGCTGTGCAGCTTGAATT TGAGTGAGATATGTTATAATTGACAAGGTCCTTTAGTAAGTAATTTGAATGTTTTGTCAGTCTTAGAAAGAATAAGAAGA AGCATGTGAATTGAAGTTAATTGACAAAGAGGGTGAAGGAGCTGCATGAGACTTGAAGTTCTAACAGATTAAGGGAGTAC TTAATTTGAAAAGGTTGAAATTTTAGAAGGAAATTACTTTGAGCTTGTATGCATACAACTATAGTTTTGGACAGTTGAAA GTGAATTTGTGCAACTCATTTACAATCCAACTTCGAAGTTTTGCCATTCCTGTAATATGAAAGTGAGTTGAAGGTTTATC CTTTTTGAAAAAATCAGAACCATTCCAACTCACCCTATTTTCATCCATTGGTTATTGGTGGCTAAATCCATATTGCTTAA CAGTTAACACTATACTTATTTAAAACATTTATTATGTCGATATCTTCTGGATGTTACTGCACAATGTGCCGCTGCATAAA ATTTATATGTTATCGTCTTTTCATTTTTGCAGATAATAGTTGTGGAAGATACCAAAGAGTATATTAGTTATGCCCCAAAG GAAGAGACAAAAGCTCAAGATAGAGTGCCTTTTGATCTTTTGGTACGTTCCTATGCAAAGAAAAGTAGAGTATTAACATT AAGTGTGTAGTTTGGTCCTAATGATTTATTACTTTAATACATCATTCATTAGTTCTCTTGAGGCAGGTGATCCTGAATCC CAAGCTAGAGAAGAAGAGCAACAGGACTGCCCTATTTTTTGAAGGGTGCTTGAGGTGTGGCAATAGTTTACTTTCCCCTT TTTTTCATCTTTATTACCTACCATGCTTTGTCTTCAGTAGCTGAGATGATAAGTAGAAACCATTGCATACATCTTATTAC TGTAAGAAATTCTTGCATATCGTAATTTAAACATTCACTATTGGGACTTTCAATAGGTAGTTGATCCTTTCATGACTAAT GGCTAAAGTTCCTCTGAAATTTTGTACAAAACTAGTCTTCCTTTTTTCCCAATTTCATTCAAATAAGGAATGATACCTAA TGGGATGACACAGCCAGGCTACAGCAACCAATTTTACAATGTCTAATTATTAATTTTTCTTAACCTGTCCATTAAAGGGC ATGTATGCCTCAGTTTTAGACAATTGCTTCAGAGCTGATGTGCTAAGGGGATTAATTTTTTCTCAATAGCCAAAGAGTAT TAATGCTTACTTCACGAACTACGGGCTGTTTACTGTCCATTTTTATTTTCCTGTTTTCATTTTCTTCTTTTAGTTTTAAT TGCAAAAATGTCTTTATTTCCTCTTTTAAAAGTTTATATATAAACACTTTCTATGCAAGACTTTGAAATTAGGAAACAAA GTGAAAACAATGGTCATTTTTGCAATTAAAAATAAAAACAGAAAATGGAAATGGAAACTAAACAGACCCTAGGATTCTCA ACTTGGTGATGCCTCTTTGTTGGCATCTCTGTACTTTAGTGAATTCATAATAGTTTTTATAATATCAAAATATTAACTTA ATGATGATCGTCTGCATATGCTTAGATGATTTAAGTTTTTAAACAGTTATACTGGTCGAATTGCTCAACTCTAGCTTACT CACCTTGTTATTCTGATGTGAACTGCACTTGCTGTTTTTATAATTTGATGTCCAATATGCATGGGCTTTGGCCTTTGTCT AAATTATAATTTGTCCATGGCGATATACCATGAGTTATGAGTATAATGCATGAACGTGGATGCAGTTCCTGATGTAGTTT GTGGAACAGAATAGTGAGATATCTCAATGTTGTCTAGTCCTAAATGTAAATATGCCACTTTTGAATGACATTTCCTTTCA ATCTGTTAGGACTCAGATAACATTACTGGAATATTGATGTGGACTGTTTAACTTTTTATGATTTATGTAGCAATATTGTG TGAAACAACAGACTGTCCTGTTATCCAGGGGTACTATTAACATCTTCAATTGTTGTAACATTTTGCAGTGTTGATGGATT TAGAGCAGTGGTGGAGCGACATCTTGACGTTGAAGTTACAGGTTTGGATCGCTACGGTGCCCCAATCAAAATAAATGCGT CGGGTTGGCAAGCCCGGATTTTACAACATGAGTGTGATCACTTGGATGGCACTTTGTATGTTGATAAGATGGTACCTAGA ACTTTTAGAACTGTGGACAACTTGAACCTCCCCCTTGGCCAGGGGTGCCCCAAACTTGGTCCTCGCTAACCCAAATTTGG GTTTCTGCGGCTGCCTCTGATAAGGCCTTCAACACAGGTTTCTTGTGCATGTTAGTGTTAAATTGACATTTGTAGGTCCA ATTTTTAGTAATAGCCTCAAATTTAAGAATAATTAAATCTCCTTCAATTTTCAATGATATGGTTTTTCCATGAATTGTCA TTGCACACTACACTTCCTTTTTATGGAGTCCAGATATTCATGGCCCCTAGCTTTTCTCTAAGTTGCACCTCTTACCAAAA TTTCATAGGGTGTTATCTGTTTATACTTTAAAGGAATCAGGTGTCTATATACTAGGCCATGCATGTAACTTCACTTGTTA GCTCTAATGAGGTAACTCCATTTGAGGTCTAATGCAAAAGCATACACCAATTGTGTGTAAATCTTGCTTATTTCATCCTG CAAATATGAGGAATTACTTGTTGGTAATGAATCCAAATGATAAAAATGTTCATGTTCTAAATACAAGGATTTTGATATAT TCATAGGTTATGATTCATTCACACTACTATCATTTTTCACTTCAATTACA
CDS sequence (LotjaGi3g1v0358400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCCTTGCACATGCAGCGTGTACTTCCCATATCTGCTGCCCAAAACACTCTCTTTACGCGCCCAACTGCCACCCC ATTATCTGGAGTTGCAATGGCAAGGCCACCATTGAGTTTAAGCTTATCATCTTCTTCTCAAGCTGCCGCTGCCACTGCCA CTGCAAGAGCAGGGTGGTTTTTGGGTCTAACAGCAGATAACAAGAAGATGAAATTGCCTGACACTGTCAAAGCTGGTGAC CCTGTTCTTCATGAGCCTGCCCAGGAAGTTAATCCCAGTGAGATAAAGTCGGAGAGAGTGCAGAAGATCATTGATGACAT GATCCGGGTCATGAGGAATGCTCCTGGGGTTGGTTTAGCTGCTCCCCAGATTGGAGTTCCTTTAAGGATAATAGTTGTGG AAGATACCAAAGAGTATATTAGTTATGCCCCAAAGGAAGAGACAAAAGCTCAAGATAGAGTGCCTTTTGATCTTTTGGTG ATCCTGAATCCCAAGCTAGAGAAGAAGAGCAACAGGACTGCCCTATTTTTTGAAGGGTGCTTGAGTGTTGATGGATTTAG AGCAGTGGTGGAGCGACATCTTGACGTTGAAGTTACAGGTTTGGATCGCTACGGTGCCCCAATCAAAATAAATGCGTCGG GTTGGCAAGCCCGGATTTTACAACATGAGTGTGATCACTTGGATGGCACTTTGTATGTTGATAAGATGGTACCTAGAACT TTTAGAACTGTGGACAACTTGAACCTCCCCCTTGGCCAGGGGTGCCCCAAACTTGGTCCTCGCTAA
Protein sequence (LotjaGi3g1v0358400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEALHMQRVLPISAAQNTLFTRPTATPLSGVAMARPPLSLSLSSSSQAAAATATARAGWFLGLTADNKKMKLPDTVKAGD PVLHEPAQEVNPSEIKSERVQKIIDDMIRVMRNAPGVGLAAPQIGVPLRIIVVEDTKEYISYAPKEETKAQDRVPFDLLV ILNPKLEKKSNRTALFFEGCLSVDGFRAVVERHLDVEVTGLDRYGAPIKINASGWQARILQHECDHLDGTLYVDKMVPRT FRTVDNLNLPLGQGCPKLGPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 15 | 257 | 243 | 1.9E-94 | – | |
PANTHER | 15 | 257 | 243 | 1.9E-94 | ||
SUPERFAMILY | 65 | 244 | 180 | 5.23E-53 | ||
Gene3D | 70 | 260 | 191 | 9.4E-72 | ||
Hamap | 71 | 247 | 177 | 26.699 | ||
CDD | 76 | 232 | 157 | 5.52712E-65 | ||
TIGRFAM | 76 | 238 | 163 | 4.2E-36 | ||
Pfam | 76 | 239 | 164 | 1.7E-49 | ||
PRINTS | 105 | 134 | 30 | 8.7E-34 | ||
PRINTS | 178 | 189 | 12 | 8.7E-34 | ||
PRINTS | 190 | 208 | 19 | 8.7E-34 | ||
PRINTS | 209 | 238 | 30 | 8.7E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0358400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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