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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0358900 |
| Transcript ID | LotjaGi3g1v0358900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger (Ran-binding) family protein; TAIR: AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|O13801|YE04_SCHPO Uncharacterized RNA-binding protein C17H9.04c; TrEMBL-Plants: tr|I3T4S8|I3T4S8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0358900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:74108564..74114655) extracted from Lotus japonicus Gifu genome v1.2.
AGTCACTCTGCTTTACCTTATTGAGGGCAAAAACTTAAAAAATGACATTTCATACAAGGTAGTCCTTGAATTTCTCAATC TCATTTTTAAGACAATACACCAACTAGTCCTGAAAATTGTGAAGTAACATTACTAGCAAATAAATACCTTGCTTGTAGAA AGAGCGATGTTTCGATGTTTGTTGACACTAACGCAAATAGACGTTACCACTCATTTTAAGACAAATAGTAAACGAAACTC TTCTTTTGAATATGAAAGTGCTTTCAACTAAATATTTCCATGATTCTATTAATATGTTAGTCATTCTTGAATCTTGATGG CCAGGGTTTAAGCTTCTAGAGGCCATGTAATAATTAAAAAATGCTATGAAATTGAATGTCCGATTTTGGAATTGAAGGAC AAATGATTATCCTATATGCACTTTGCATTCATTACCGTACCATTCAAACTTAAACAAAATGAAGTTGTAACCCACTGCCA AAGTATATGTTCAAAATTCAAAGCAACCTCTCTTTGGAATTGCAGCACAAATTTCCTTTATCTTTTTTCCCTCCTTTAGA ATTCACTGATTCCATTTATCAAGGTTACCACTCAAACAACACTTAAAAGTGCTACAACACGGCCCTCCATTTATTCTCTT TTTCCTCTGGTCTCTGCCAGTATATAAGGCCACTACCCTATATCACATTTCTTCATCAGTAAAACAATCCTCTTCAGCTT CTGTATCTCTGATATTTCAAGTTTTTCTATTATCTTGAGGTTAGTCCTGTTTTTTCACTTCTGCTATCCCCTCATCACTT TTCTTTCAGTCTTACTTAATCTTCAAAAAAAATTCATGTTAGTCTTCAGTAATTAAATACAATCTTCCTTCTACTCTCTA TCATGTCAGCCTCGTAACTTGTTTTTATAGTTTTCAGAGAAGTTAATCCATAACTAAGTTTCTTTTGTTTCCTGCATTAT AATAAGCAGAATGCTACCTAGCAAGCTAGTGTCTACTACCATTATCAAACACTTGTGCATGTAAATGATAATATGGCACA AGTACTTTGCTTAACAGAAAATTTAGTTTCTTTAAAATAATGATATGTCATCATAGTGACAATTTATTAATACTTGATAC CTGTTTCATCATTTTTATAGTCTTCTAATGAAATTTTGGTGAATGCAACAGTAATTGCAAAGAAGCAAACATGAGCAGGC CCGGAGATTGGAACTGCAGGTCCTGCCAGCACCTGAACTTTCAGAGGAGAGATTCATGCCAGCGATGTGGGGACTCCAAA TATGGAGACAGGATCGATTTTGGGGCATTTGGAGGTGGAATTAGAGGAGGGTCTTCATTTGGGTTGAGCGGTTCAGATGT TCGCCCAGGTGACTGGTACTGTGCTGCTGCTAACTGTGGTGCACACAACTTTGCTAGCCGCTCAAGCTGCTTCAAATGTG GTGCATTCAAGGATGACTTAGTTGGAGGCTTCAGCAGCGACATCTTGCGCTCAAGAGGCGGCTTTGGTGGCGGCGGCGGA GGAAGACCTGGATGGAAATCTGGTGACTGGATATGCAGCAGGTGATTTTTATTTTATCTTACAATCTTTTGATTATTGGT TCTTTATGAGGAGCAAATTTTCAGTACTTCTGTAGTAGTGACGTACTTCTAAAGTATTTGAAGTACTGAAGACTCAGTAC ATTCCACTCATAAAGTGATAGTTATCTTCTTTTGGTTAATTTAAAAAAAAAATCAAAATTTGGAATAACTTGCCATACAT GTCAGGTGCCATGCTTTCTCTTTATTAGAGAACACCTCATGCTTTTATGTTGTGTAAGCCCAAATGCCCTAATAACACAT ACCAATTACCAAAGCCACTGTTGGTGTTTATAGGCATGCAATTGATATGATATATCCTTTATTTGGTTCCCCTTTCTTTG ACTGCTTTAAGGAGTTACATACTTTGAAAACTAGTTTTAGCTTTTGATCACTTGCACATCTCAAATGAAAAACAAGGTTA CATGCACTTTACTACCTATTTAACAGGTAAAACAGTAGTCCTATTTAACTAGGTAAAGCAGTAGTCTATGTGTTTCTTGC TGTAAAATAACATGATTTTTTTATTTCATTTGAACAGATCAGGATGCAATGAGCACAATTTTGCTAGCAGAATGGAATGT TTTAAATGCAGCGCCCCTAGGGACACTTACCAGATATGACTATGAGAATATCCAAGCAAGACATTAATTACTAGAGATGC TGTTAGATGTTAAATTTAATTGCTTTGGGATGTTAAAGACAATGTTAATTCTGAAAAGGTGGTTTGAAACGCCATGTAAC AGAGAAGCCACATCCCTTAGGCTCTTTCTCAGATTTCCCTCAAAAGCTACAATGTTGTTTTGGTGCTTTAAACTATTTTC TTTGGTCTGTTTTAGAGAGTTCATTTATTGTATGGTGCGTGGTTTTCTTAAATGAAGATGAATATTTCTTTTCTTTAATT TCTCACGGTAAGAGCTAGTAGTACTTCCTAAATGTATGTGTCAGATCCATCATTATCTCACACTCATTGAGTGGAAGAGG TTAATCAGTAATTTTGGACAGCAATTAAAGTTAAGCATACATGTTATAGCGTGTTTGGATTGGTAGTAACACACAATCCA AAGCACAGTAACTCCAGAAGCTACATTTTGTAGCTTCTCTCCATAAGTGATTATCAGAGTTTTAACCATGGAACCAAACA TGCTATTAGTTCATATGGTTTACCATTTGTAACTATTTTTGTAACTCGAAACCAAAATGGAACAAGACAAAAAAGTCTAC CAAGCAATCTAACAAGGAACAACTTTTAAAACCTTTAGGTTGGCCAAAAGAACATTTTGACATAACTTTGAATGAACATT TAGCAATGTAATTATTAAGTTGATCATATTTTATAATAGTTAACTACAAATATGCATTGTGGATTCCCTGACATCACTGG CATAGTGAGCATATTTGACACACAATCACATTGGATTCCTTTCACTGAATGTAAAGTACACATTCAAAAAGGAAGTGCAT TGTGGATTCAAAAGATAAAACCCAAGACTCCAAAACTCTATCTGCTTTTATGTAGGACTCTTGTCTTCCTTTCAGGCAAG CTTTATGTTAGTGAAGTGTCTCCAATTCTTTTCAGGCAACCTTTCTGTTGGAGATGTCTCTCCAAATCTAGATTATATAT AAGATACATGGCCCTTCTTTTATTAATATAAATTCTTTGGGGTCAATATTATTATTAATATTTTGTTAAAGGCTACATGA CTTATCAGCTAGGGGTCCCAAGATGTCTTCCTAGTTGGATGCAGTTTGGTAATGGAGCTGATTATGAAATATTATCTCCT AAAACTCTGATTAGCCTATCAATTCTGAAGTTGAAAATCTGTGATTCTTCTTTCCAATAAGGGACATTTTCACTGATTAG ACATGTTTTCTTTTGGGTTCCTCTCCCTTCCCAAGTTAGAACCCATTCCATTATTTTCCTTTATAGTCATTTATTTCTCT TATATGAAGAAAAATAAGTAATATTTTGAATGATAAATGAGGGAAATGAATTCCATTAGTGAATACAAATGATTGCTTTA ATGAGACACACTATACCAAAGACACTACAGAAGAAGATAATTGATGCAAGAACCATAATACTCATTTTCTATTGCAATGT ATTATCTTCAGAAGATCTTGCCCATTTGATAGTTGACCAGGCTAAGGCGTCCATTGGATCAATGCATTTCTTAAGAAGAG GATCATCTTTGGGCAAGAGATCCCGCATATCATCAGAAGCAAGGATAACAGAGTTCACGGCTCTTACCAGAAGAACTTGA AGCGCAATTCTAAATAGATTGCATGCCCCTTCCATGTCTTTTCTGTCCAAAGCTTCTATAGCAGGTATCACTGTATGCTC CATAGTTGCTCTATCAGGCAGCACAACCTCGAACCCCTACATGTAAAGTAAAGAAGTTAAATAACTATTCACATCTCTAC ATCCTTGCCACCACAATTCAACATGGTCTTGCTTATGTGGAATAAATAAGGCCACGTGGATTGTATTATTTAGACAAAAA TGATGAACAGAACTCCGTATAGATGTTAACATGAGAATGCCGAAATGGACCAAGATAGTGAAAAACTGAAAATACACAAA ATGATGATGCAGAAGTAAGCATTGCAGGAAAGTCAAGGAATAAGAGAAATAATCAAAAGAAGAAATTTCGCCAAGAAATT TATATGATCTACATATGAATTACAACTGCAGGGCTGTGTTAATAAAATCTTCCACATGCACATGTTTGGCTTACAAATTC CACTATAAACATTTACAGATGCCAATGGTTATTCATAACAATGAACAGATGTAGCTATAGTTTGATAATGATTTAGCCTT GATTCAAGTGGAATCATGTCTCTTTGGAGAGTGGAAAGTACTTGATCAAAGGTTCAACCCAACCTTATTCCAAACTCCAA AATAAAGATAATAGGGAAATAGCCGAGGTATCAGAAAACAAGACTCAAACACCTTGTCCCAAGAATCCAGGGTTTGGCAT ATGACAATACTGTTGGCACTTGTGCAATGAAGTTAAGAACATAAATAGTAGTATATATTGTTTCCATACTATAGGGCATA AACGTTAGTTCCCAGTAAAGAACACAAATCAAGAGATTGAAAGGTTTGGAATTGCTAAAACATTGATTAAACTTGGCATG TTTGATAAAAATTCAATTTTCAAGTGCCCCTAAATTGAACTCTTGGGCAATTATACCAAAACAAAAGCACCTATAATGTA GTCTATCACACATCCCCTTAATATAGTAGCTACCCTATCCATTTCATTTTTGGTAAGAGAATATGAACTGCATTGGAAGT TGGAACTTCAATTTTATATTGTAATGATAATAATACATGTACCAATCTGTTCAAACTCATGTAAACCGGATGCCGTTCTT CAATTTCTCATAACTCATAAGCAACCAAGCAGAAATCTACAAATTTTAAAATTGAAGTTTATAGAGGTCTGCTAACATGA TGAGAGTACCATAAAAGTAACATTACAGTGGAAAAGCAAGTCTTTAAAGTGGGGGCACTTCTCAACTTCTCAGAGAATCT ACTTTTCTTTTCTCAAGTTTTCAGATATGCTGATCACAGTTAACACAAAAAGCTATTCAGAAAAACATCACTACTGGGAG AAAAATTACTTCATTCTGAAGCTTCTCCTGATAAAACCCGGCTGCTAGAGTCGCGTTAGTCGCGAGCACTCCGATCCGCA AGGGATTACCAGCTTCAAGCGGCTTTAACTTAGCATCCTTCAGTCTCCTTGCAACACACTCTGCCATGTGAAGAAAAGGA ACAGAACATCCCTTAGACACCTCTTCATACCAAGAATGCGAAACATGGCAAGGCATCACAACGCAACGCGCCCCGGAACA CTCAAGAAACCCCCTTTTACTCATCAAACTCTGCACAATTGAGGAAGTGTCCAATTTCAAACCTTCAACTTCACTTGTGC TTGAAACAAGATAGCTTCTTTCATAAGACAAAAGCTCCTTACTCAACAGAGGATCAGAACAAATCACAAAAGGAGGTGCA TTTCCTCCATCTTCAGAACTGAATTCCACAAGTTTTCTTAGAAATTTCAAAGTGGCATTCACTGAAACCCCTCCAATTAC ACCCACGCTATTGGGTAGAGTGACCAAAGGGGTGGGAAATTCGCCACTTTCACATGCAGTTACAACAATTGATGATTTGG TTGTCTTGCACGGGTTTCTAGGTGGGTTGAAATAACATGATGTCTGGAAAGACGGTGTTAAGATTGCTTTGAACATGTCA AAAGTTTGGAATTGGGAATTGTAATAGTACTACTTCATTGAAGAGTGAATGTGTGTGTACCTTAATCTGGAACATGATCT ATCTGTTGCAATTCATGTTTTGTTAAGCTGTAAGAGTTGTTTTCTTGTGTGTGATGAACCCCATGTGCAAGAAGAACCAA ACTGAGTTCATGTGCAAAGATTGTCATCTGAATTTACGCGTCTGTCTCTTGTCTCACTCCACTGTGAAACTACCTGGACA CTTCTCTTTCGC
CDS sequence (LotjaGi3g1v0358900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAGGCCCGGAGATTGGAACTGCAGGTCCTGCCAGCACCTGAACTTTCAGAGGAGAGATTCATGCCAGCGATGTGG GGACTCCAAATATGGAGACAGGATCGATTTTGGGGCATTTGGAGGTGGAATTAGAGGAGGGTCTTCATTTGGGTTGAGCG GTTCAGATGTTCGCCCAGGTGACTGGTACTGTGCTGCTGCTAACTGTGGTGCACACAACTTTGCTAGCCGCTCAAGCTGC TTCAAATGTGGTGCATTCAAGGATGACTTAGTTGGAGGCTTCAGCAGCGACATCTTGCGCTCAAGAGGCGGCTTTGGTGG CGGCGGCGGAGGAAGACCTGGATGGAAATCTGGTGACTGGATATGCAGCAGATCAGGATGCAATGAGCACAATTTTGCTA GCAGAATGGAATGTTTTAAATGCAGCGCCCCTAGGGACACTTACCAGATATGA
Protein sequence (LotjaGi3g1v0358900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRPGDWNCRSCQHLNFQRRDSCQRCGDSKYGDRIDFGAFGGGIRGGSSFGLSGSDVRPGDWYCAAANCGAHNFASRSSC FKCGAFKDDLVGGFSSDILRSRGGFGGGGGGRPGWKSGDWICSRSGCNEHNFASRMECFKCSAPRDTYQI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 33 | 33 | 1.1E-10 | – | |
| PANTHER | 2 | 147 | 146 | 6.7E-75 | – | |
| PANTHER | 2 | 147 | 146 | 6.7E-75 | – | |
| SUPERFAMILY | 2 | 33 | 32 | 1.4E-8 | ||
| ProSiteProfiles | 3 | 32 | 30 | 9.348 | ||
| Pfam | 3 | 28 | 26 | 0.0022 | ||
| SMART | 5 | 29 | 25 | 3.2E-5 | ||
| ProSitePatterns | 7 | 26 | 20 | - | ||
| Gene3D | 49 | 90 | 42 | 4.5E-15 | – | |
| SUPERFAMILY | 52 | 88 | 37 | 1.26E-11 | ||
| Pfam | 58 | 85 | 28 | 1.5E-5 | ||
| ProSiteProfiles | 58 | 89 | 32 | 9.97 | ||
| SMART | 60 | 86 | 27 | 7.0E-5 | ||
| ProSitePatterns | 62 | 83 | 22 | - | ||
| SUPERFAMILY | 108 | 147 | 40 | 2.43E-12 | ||
| Gene3D | 110 | 149 | 40 | 5.4E-13 | – | |
| Pfam | 116 | 145 | 30 | 2.5E-9 | ||
| ProSiteProfiles | 116 | 147 | 32 | 10.444 | ||
| SMART | 118 | 144 | 27 | 2.2E-5 | ||
| ProSitePatterns | 120 | 141 | 22 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0358900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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