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LotjaGi3g1v0359000.1

Overview

Field Value
Gene ID LotjaGi3g1v0359000
Transcript ID LotjaGi3g1v0359000.1
Lotus japonicus genome version Gifu v1.2
Description Aspartate racemase; TAIR: AT1G15410.1 aspartate-glutamate racemase family; Swiss-Prot: sp|O58403|RACD_PYRHO Aspartate racemase; TrEMBL-Plants: tr|I1M5S1|I1M5S1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0359000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:74108564..74114655) extracted from Lotus japonicus Gifu genome v1.2.

GCGAAAGAGAAGTGTCCAGGTAGTTTCACAGTGGAGTGAGACAAGAGACAGACGCGTAAATTCAGATGACAATCTTTGCA CATGAACTCAGTTTGGTTCTTCTTGCACATGGGGTTCATCACACACAAGAAAACAACTCTTACAGCTTAACAAAACATGA ATTGCAACAGATAGATCATGTTCCAGATTAAGGTACACACACATTCACTCTTCAATGAAGTAGTACTATTACAATTCCCA ATTCCAAACTTTTGACATGTTCAAAGCAATCTTAACACCGTCTTTCCAGACATCATGTTATTTCAACCCACCTAGAAACC CGTGCAAGACAACCAAATCATCAATTGTTGTAACTGCATGTGAAAGTGGCGAATTTCCCACCCCTTTGGTCACTCTACCC AATAGCGTGGGTGTAATTGGAGGGGTTTCAGTGAATGCCACTTTGAAATTTCTAAGAAAACTTGTGGAATTCAGTTCTGA AGATGGAGGAAATGCACCTCCTTTTGTGATTTGTTCTGATCCTCTGTTGAGTAAGGAGCTTTTGTCTTATGAAAGAAGCT ATCTTGTTTCAAGCACAAGTGAAGTTGAAGGTTTGAAATTGGACACTTCCTCAATTGTGCAGAGTTTGATGAGTAAAAGG GGGTTTCTTGAGTGTTCCGGGGCGCGTTGCGTTGTGATGCCTTGCCATGTTTCGCATTCTTGGTATGAAGAGGTGTCTAA GGGATGTTCTGTTCCTTTTCTTCACATGGCAGAGTGTGTTGCAAGGAGACTGAAGGATGCTAAGTTAAAGCCGCTTGAAG CTGGTAATCCCTTGCGGATCGGAGTGCTCGCGACTAACGCGACTCTAGCAGCCGGGTTTTATCAGGAGAAGCTTCAGAAT GAAGTAATTTTTCTCCCAGTAGTGATGTTTTTCTGAATAGCTTTTTGTGTTAACTGTGATCAGCATATCTGAAAACTTGA GAAAAGAAAAGTAGATTCTCTGAGAAGTTGAGAAGTGCCCCCACTTTAAAGACTTGCTTTTCCACTGTAATGTTACTTTT ATGGTACTCTCATCATGTTAGCAGACCTCTATAAACTTCAATTTTAAAATTTGTAGATTTCTGCTTGGTTGCTTATGAGT TATGAGAAATTGAAGAACGGCATCCGGTTTACATGAGTTTGAACAGATTGGTACATGTATTATTATCATTACAATATAAA ATTGAAGTTCCAACTTCCAATGCAGTTCATATTCTCTTACCAAAAATGAAATGGATAGGGTAGCTACTATATTAAGGGGA TGTGTGATAGACTACATTATAGGTGCTTTTGTTTTGGTATAATTGCCCAAGAGTTCAATTTAGGGGCACTTGAAAATTGA ATTTTTATCAAACATGCCAAGTTTAATCAATGTTTTAGCAATTCCAAACCTTTCAATCTCTTGATTTGTGTTCTTTACTG GGAACTAACGTTTATGCCCTATAGTATGGAAACAATATATACTACTATTTATGTTCTTAACTTCATTGCACAAGTGCCAA CAGTATTGTCATATGCCAAACCCTGGATTCTTGGGACAAGGTGTTTGAGTCTTGTTTTCTGATACCTCGGCTATTTCCCT ATTATCTTTATTTTGGAGTTTGGAATAAGGTTGGGTTGAACCTTTGATCAAGTACTTTCCACTCTCCAAAGAGACATGAT TCCACTTGAATCAAGGCTAAATCATTATCAAACTATAGCTACATCTGTTCATTGTTATGAATAACCATTGGCATCTGTAA ATGTTTATAGTGGAATTTGTAAGCCAAACATGTGCATGTGGAAGATTTTATTAACACAGCCCTGCAGTTGTAATTCATAT GTAGATCATATAAATTTCTTGGCGAAATTTCTTCTTTTGATTATTTCTCTTATTCCTTGACTTTCCTGCAATGCTTACTT CTGCATCATCATTTTGTGTATTTTCAGTTTTTCACTATCTTGGTCCATTTCGGCATTCTCATGTTAACATCTATACGGAG TTCTGTTCATCATTTTTGTCTAAATAATACAATCCACGTGGCCTTATTTATTCCACATAAGCAAGACCATGTTGAATTGT GGTGGCAAGGATGTAGAGATGTGAATAGTTATTTAACTTCTTTACTTTACATGTAGGGGTTCGAGGTTGTGCTGCCTGAT AGAGCAACTATGGAGCATACAGTGATACCTGCTATAGAAGCTTTGGACAGAAAAGACATGGAAGGGGCATGCAATCTATT TAGAATTGCGCTTCAAGTTCTTCTGGTAAGAGCCGTGAACTCTGTTATCCTTGCTTCTGATGATATGCGGGATCTCTTGC CCAAAGATGATCCTCTTCTTAAGAAATGCATTGATCCAATGGACGCCTTAGCCTGGTCAACTATCAAATGGGCAAGATCT TCTGAAGATAATACATTGCAATAGAAAATGAGTATTATGGTTCTTGCATCAATTATCTTCTTCTGTAGTGTCTTTGGTAT AGTGTGTCTCATTAAAGCAATCATTTGTATTCACTAATGGAATTCATTTCCCTCATTTATCATTCAAAATATTACTTATT TTTCTTCATATAAGAGAAATAAATGACTATAAAGGAAAATAATGGAATGGGTTCTAACTTGGGAAGGGAGAGGAACCCAA AAGAAAACATGTCTAATCAGTGAAAATGTCCCTTATTGGAAAGAAGAATCACAGATTTTCAACTTCAGAATTGATAGGCT AATCAGAGTTTTAGGAGATAATATTTCATAATCAGCTCCATTACCAAACTGCATCCAACTAGGAAGACATCTTGGGACCC CTAGCTGATAAGTCATGTAGCCTTTAACAAAATATTAATAATAATATTGACCCCAAAGAATTTATATTAATAAAAGAAGG GCCATGTATCTTATATATAATCTAGATTTGGAGAGACATCTCCAACAGAAAGGTTGCCTGAAAAGAATTGGAGACACTTC ACTAACATAAAGCTTGCCTGAAAGGAAGACAAGAGTCCTACATAAAAGCAGATAGAGTTTTGGAGTCTTGGGTTTTATCT TTTGAATCCACAATGCACTTCCTTTTTGAATGTGTACTTTACATTCAGTGAAAGGAATCCAATGTGATTGTGTGTCAAAT ATGCTCACTATGCCAGTGATGTCAGGGAATCCACAATGCATATTTGTAGTTAACTATTATAAAATATGATCAACTTAATA ATTACATTGCTAAATGTTCATTCAAAGTTATGTCAAAATGTTCTTTTGGCCAACCTAAAGGTTTTAAAAGTTGTTCCTTG TTAGATTGCTTGGTAGACTTTTTTGTCTTGTTCCATTTTGGTTTCGAGTTACAAAAATAGTTACAAATGGTAAACCATAT GAACTAATAGCATGTTTGGTTCCATGGTTAAAACTCTGATAATCACTTATGGAGAGAAGCTACAAAATGTAGCTTCTGGA GTTACTGTGCTTTGGATTGTGTGTTACTACCAATCCAAACACGCTATAACATGTATGCTTAACTTTAATTGCTGTCCAAA ATTACTGATTAACCTCTTCCACTCAATGAGTGTGAGATAATGATGGATCTGACACATACATTTAGGAAGTACTACTAGCT CTTACCGTGAGAAATTAAAGAAAAGAAATATTCATCTTCATTTAAGAAAACCACGCACCATACAATAAATGAACTCTCTA AAACAGACCAAAGAAAATAGTTTAAAGCACCAAAACAACATTGTAGCTTTTGAGGGAAATCTGAGAAAGAGCCTAAGGGA TGTGGCTTCTCTGTTACATGGCGTTTCAAACCACCTTTTCAGAATTAACATTGTCTTTAACATCCCAAAGCAATTAAATT TAACATCTAACAGCATCTCTAGTAATTAATGTCTTGCTTGGATATTCTCATAGTCATATCTGGTAAGTGTCCCTAGGGGC GCTGCATTTAAAACATTCCATTCTGCTAGCAAAATTGTGCTCATTGCATCCTGATCTGTTCAAATGAAATAAAAAAATCA TGTTATTTTACAGCAAGAAACACATAGACTACTGCTTTACCTAGTTAAATAGGACTACTGTTTTACCTGTTAAATAGGTA GTAAAGTGCATGTAACCTTGTTTTTCATTTGAGATGTGCAAGTGATCAAAAGCTAAAACTAGTTTTCAAAGTATGTAACT CCTTAAAGCAGTCAAAGAAAGGGGAACCAAATAAAGGATATATCATATCAATTGCATGCCTATAAACACCAACAGTGGCT TTGGTAATTGGTATGTGTTATTAGGGCATTTGGGCTTACACAACATAAAAGCATGAGGTGTTCTCTAATAAAGAGAAAGC ATGGCACCTGACATGTATGGCAAGTTATTCCAAATTTTGATTTTTTTTTTAAATTAACCAAAAGAAGATAACTATCACTT TATGAGTGGAATGTACTGAGTCTTCAGTACTTCAAATACTTTAGAAGTACGTCACTACTACAGAAGTACTGAAAATTTGC TCCTCATAAAGAACCAATAATCAAAAGATTGTAAGATAAAATAAAAATCACCTGCTGCATATCCAGTCACCAGATTTCCA TCCAGGTCTTCCTCCGCCGCCGCCACCAAAGCCGCCTCTTGAGCGCAAGATGTCGCTGCTGAAGCCTCCAACTAAGTCAT CCTTGAATGCACCACATTTGAAGCAGCTTGAGCGGCTAGCAAAGTTGTGTGCACCACAGTTAGCAGCAGCACAGTACCAG TCACCTGGGCGAACATCTGAACCGCTCAACCCAAATGAAGACCCTCCTCTAATTCCACCTCCAAATGCCCCAAAATCGAT CCTGTCTCCATATTTGGAGTCCCCACATCGCTGGCATGAATCTCTCCTCTGAAAGTTCAGGTGCTGGCAGGACCTGCAGT TCCAATCTCCGGGCCTGCTCATGTTTGCTTCTTTGCAATTACTGTTGCATTCACCAAAATTTCATTAGAAGACTATAAAA ATGATGAAACAGGTATCAAGTATTAATAAATTGTCACTATGATGACATATCATTATTTTAAAGAAACTAAATTTTCTGTT AAGCAAAGTACTTGTGCCATATTATCATTTACATGCACAAGTGTTTGATAATGGTAGTAGACACTAGCTTGCTAGGTAGC ATTCTGCTTATTATAATGCAGGAAACAAAAGAAACTTAGTTATGGATTAACTTCTCTGAAAACTATAAAAACAAGTTACG AGGCTGACATGATAGAGAGTAGAAGGAAGATTGTATTTAATTACTGAAGACTAACATGAATTTTTTTTGAAGATTAAGTA AGACTGAAAGAAAAGTGATGAGGGGATAGCAGAAGTGAAAAAACAGGACTAACCTCAAGATAATAGAAAAACTTGAAATA TCAGAGATACAGAAGCTGAAGAGGATTGTTTTACTGATGAAGAAATGTGATATAGGGTAGTGGCCTTATATACTGGCAGA GACCAGAGGAAAAAGAGAATAAATGGAGGGCCGTGTTGTAGCACTTTTAAGTGTTGTTTGAGTGGTAACCTTGATAAATG GAATCAGTGAATTCTAAAGGAGGGAAAAAAGATAAAGGAAATTTGTGCTGCAATTCCAAAGAGAGGTTGCTTTGAATTTT GAACATATACTTTGGCAGTGGGTTACAACTTCATTTTGTTTAAGTTTGAATGGTACGGTAATGAATGCAAAGTGCATATA GGATAATCATTTGTCCTTCAATTCCAAAATCGGACATTCAATTTCATAGCATTTTTTAATTATTACATGGCCTCTAGAAG CTTAAACCCTGGCCATCAAGATTCAAGAATGACTAACATATTAATAGAATCATGGAAATATTTAGTTGAAAGCACTTTCA TATTCAAAAGAAGAGTTTCGTTTACTATTTGTCTTAAAATGAGTGGTAACGTCTATTTGCGTTAGTGTCAACAAACATCG AAACATCGCTCTTTCTACAAGCAAGGTATTTATTTGCTAGTAATGTTACTTCACAATTTTCAGGACTAGTTGGTGTATTG TCTTAAAAATGAGATTGAGAAATTCAAGGACTACCTTGTATGAAATGTCATTTTTTAAGTTTTTGCCCTCAATAAGGTAA AGCAGAGTGACT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0359000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTCAAAGCAATCTTAACACCGTCTTTCCAGACATCATGTTATTTCAACCCACCTAGAAACCCGTGCAAGACAACCAA ATCATCAATTGTTGTAACTGCATGTGAAAGTGGCGAATTTCCCACCCCTTTGGTCACTCTACCCAATAGCGTGGGTGTAA TTGGAGGGGTTTCAGTGAATGCCACTTTGAAATTTCTAAGAAAACTTGTGGAATTCAGTTCTGAAGATGGAGGAAATGCA CCTCCTTTTGTGATTTGTTCTGATCCTCTGTTGAGTAAGGAGCTTTTGTCTTATGAAAGAAGCTATCTTGTTTCAAGCAC AAGTGAAGTTGAAGGTTTGAAATTGGACACTTCCTCAATTGTGCAGAGTTTGATGAGTAAAAGGGGGTTTCTTGAGTGTT CCGGGGCGCGTTGCGTTGTGATGCCTTGCCATGTTTCGCATTCTTGGTATGAAGAGGTGTCTAAGGGATGTTCTGTTCCT TTTCTTCACATGGCAGAGTGTGTTGCAAGGAGACTGAAGGATGCTAAGTTAAAGCCGCTTGAAGCTGGTAATCCCTTGCG GATCGGAGTGCTCGCGACTAACGCGACTCTAGCAGCCGGGTTTTATCAGGAGAAGCTTCAGAATGAAGGGTTCGAGGTTG TGCTGCCTGATAGAGCAACTATGGAGCATACAGTGATACCTGCTATAGAAGCTTTGGACAGAAAAGACATGGAAGGGGCA TGCAATCTATTTAGAATTGCGCTTCAAGTTCTTCTGGTAAGAGCCGTGAACTCTGTTATCCTTGCTTCTGATGATATGCG GGATCTCTTGCCCAAAGATGATCCTCTTCTTAAGAAATGCATTGATCCAATGGACGCCTTAGCCTGGTCAACTATCAAAT GGGCAAGATCTTCTGAAGATAATACATTGCAATAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0359000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFKAILTPSFQTSCYFNPPRNPCKTTKSSIVVTACESGEFPTPLVTLPNSVGVIGGVSVNATLKFLRKLVEFSSEDGGNA PPFVICSDPLLSKELLSYERSYLVSSTSEVEGLKLDTSSIVQSLMSKRGFLECSGARCVVMPCHVSHSWYEEVSKGCSVP FLHMAECVARRLKDAKLKPLEAGNPLRIGVLATNATLAAGFYQEKLQNEGFEVVLPDRATMEHTVIPAIEALDRKDMEGA CNLFRIALQVLLVRAVNSVILASDDMRDLLPKDDPLLKKCIDPMDALAWSTIKWARSSEDNTLQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21198
26 298 273 5.4E-132 –
PANTHER
PTHR21198:SF7
26 298 273 5.4E-132
IPR004380
Gene3D
G3DSA:3.40.50.1860
51 288 238 2.1E-49 –
SUPERFAMILY
SSF53681
51 173 123 2.35E-16
IPR001920
Pfam
PF01177
54 292 239 4.1E-38
IPR015942
Gene3D
G3DSA:3.40.50.1860
166 283 118 2.1E-49 –
SUPERFAMILY
SSF53681
187 295 109 1.59E-16
IPR001920

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006807
Biological process Nitrogen compound metabolic process The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.
Subterm of
GO:0016855
Molecular function Racemase and epimerase activity, acting on amino acids and derivatives Catalysis of a reaction that alters the configuration of one or more chiral centers in an amino acid.
Subterm of
GO:0036361
Molecular function Racemase activity, acting on amino acids and derivatives Catalysis of the interconversion of the two enantiomers of a chiral amino acid or amino acid derivative.
Subterm of
GO:0047661
Molecular function Amino-acid racemase activity Catalysis of the reaction: an L-amino acid = a D-amino acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0359000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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