Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0359100 |
| Transcript ID | LotjaGi3g1v0359100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis-abundant protein; TAIR: AT1G52690.1 Late embryogenesis abundant protein (LEA) family protein; Swiss-Prot: sp|O49816|LEA1_CICAR Late embryogenesis abundant protein 1; TrEMBL-Plants: tr|A0A072UH01|A0A072UH01_MEDTR Late embryogenesis abundant protein group 3 protein; Found in the gene: LotjaGi3g1v0359100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:74119668..74120977) extracted from Lotus japonicus Gifu genome v1.2.
CCAACATCATCACAAAAATAGAAAGTGCTTGAGATACCATAAGAGCAAAAATCTACTGTTATAGTGAGTGAAACAAGTAA GCATATTTTCAAGAACAGCAATGGCTTCCCACGATCAGAGCTATAGAGCTGGTGAGACCATGGGCCGAACTGAGGTAATC AATGTCATTCTACAGTTCATTTTTATTTCATGTAAAGGTTAAATATGTTTTTGAGTTTTTGTCACTACAAAATAGTCAGT TATTGATTTTAATCCAAAGAATATTTCTTCAAAAAGTATCCTCATTATGGAAATATTCATGTTTTGGTCTATATGAGTCA TGAGATGACCAATACAAGAAAAATTACTACTTCTTTAGTAATTTTTATCTTCAGAATTATTTTTTATGTACTTAAGTTTT AGTCCCTCAAGAATTTTAAACATGTGTATTTTTTATTTTTGGGATTTATCTTACAGAGAAAAAATTTGAGGGACCAAAAC TAATAGTAGTTTTCTTATTTTTTGTAAACATTATGCTTTTTATCTATAATTATGAAAAAATTTGAAATTTAATATTTGGT TATGAACTTGATGGATCAGGAAAAGGGCAACCAGATGATGGGCAACATTGGGGAGAAGGCCCAGGCTGCTAAGGACAAGA CGGCCCAAACGGCCCAAGCTGCTAAGGAGAAGACAGCCCAAGGGGCCCAGGCTGCGAAGGAGAAGACCCAGCAGACAGCC CAAGCTGCTAAGGACAAGACTCAGCAGGCGGCCCATTCTACAGGGGATAGGACCCAGCAGACAGCCCAAGCTGGAAAGCA ACGGGCCTCAGAGATGGGCCAGGCCACCAGGGAATCGGCCCAAGCTGGGAACGACAATACTGGAGGGTTCATGCAGCAGA CAGGGGAGAAGGTGAAAGACATGGCACAGGGTGCTACTGAGGCTGTGAAGAGCACATTGGGTATGGGACAGAAGGATGAA ACCAAGGAGCATGTCACAACCACCACCCACACCACCACCCAAGATCCAAGAAACTTTTAGTTTCTGTTTGCTTTGTTGTT TCAATAAAATGTAATTTGTGTTTCTTGAGAATGGTTTAGTTTTACCACCATTCTCAGCATGTTTTTCTTCAAATAAATTG CAATCCCCTTATATATCCATTAGGGGAATGTACTAAGTACAATTAGCCCATTAGGGGAATGTATTATGTACTATTAGCTT GAGTGTCTACTTTCTCATTTGAGCTATGTTGTAATAGTCATGATTTACCTTCAATCAAAATTTCCATTAGTAGTTTTGTG TCATTTGTGGAGTTTTATTTTTTCCTGCAA
CDS sequence (LotjaGi3g1v0359100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCCACGATCAGAGCTATAGAGCTGGTGAGACCATGGGCCGAACTGAGGAAAAGGGCAACCAGATGATGGGCAA CATTGGGGAGAAGGCCCAGGCTGCTAAGGACAAGACGGCCCAAACGGCCCAAGCTGCTAAGGAGAAGACAGCCCAAGGGG CCCAGGCTGCGAAGGAGAAGACCCAGCAGACAGCCCAAGCTGCTAAGGACAAGACTCAGCAGGCGGCCCATTCTACAGGG GATAGGACCCAGCAGACAGCCCAAGCTGGAAAGCAACGGGCCTCAGAGATGGGCCAGGCCACCAGGGAATCGGCCCAAGC TGGGAACGACAATACTGGAGGGTTCATGCAGCAGACAGGGGAGAAGGTGAAAGACATGGCACAGGGTGCTACTGAGGCTG TGAAGAGCACATTGGGTATGGGACAGAAGGATGAAACCAAGGAGCATGTCACAACCACCACCCACACCACCACCCAAGAT CCAAGAAACTTTTAG
Protein sequence (LotjaGi3g1v0359100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASHDQSYRAGETMGRTEEKGNQMMGNIGEKAQAAKDKTAQTAQAAKEKTAQGAQAAKEKTQQTAQAAKDKTQQAAHSTG DRTQQTAQAGKQRASEMGQATRESAQAGNDNTGGFMQQTGEKVKDMAQGATEAVKSTLGMGQKDETKEHVTTTTHTTTQD PRNF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 164 | 164 | - | – | |
| PANTHER | 2 | 96 | 95 | 1.2E-24 | – | |
| PANTHER | 2 | 96 | 95 | 1.2E-24 | – | |
| Gene3D | 7 | 160 | 154 | 2.3E-5 | – | |
| SUPERFAMILY | 23 | 139 | 117 | 3.01E-5 | – | |
| MobiDBLite | 37 | 118 | 82 | - | – | |
| Coils | 51 | 71 | 21 | - | – | |
| PANTHER | 81 | 155 | 75 | 1.2E-24 | – | |
| PANTHER | 81 | 155 | 75 | 1.2E-24 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0359100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…