Domain Predictions — View

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SSF58113

Source: SUPERFAMILY

Description

No description is available for this domain.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 10

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v2035120.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: tropomyosin-2-like [Cicer arietinum] gi\|502132039\|ref\|XP_004501205.1\|	Domains CYTOPLASMIC_DOMAIN Coil NON_CYTOPLASMIC_DOMAIN PTHR34360 PTHR34360:SF1 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF57997 SSF58113 SignalP-TM_GRAM_POSITIVE SignalP-noTM_EUK SignalP-noTM_GRAM_NEGATIVE TMhelix TRANSMEMBRANE mobidb-lite	18
Lj1g3v2035120.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: tropomyosin-2-like [Cicer arietinum] gi\|502132039\|ref\|XP_004501205.1\|	Domains CYTOPLASMIC_DOMAIN Coil NON_CYTOPLASMIC_DOMAIN PTHR34360 PTHR34360:SF1 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF57997 SSF58113 SignalP-TM_GRAM_POSITIVE SignalP-noTM_EUK SignalP-noTM_GRAM_NEGATIVE TMhelix TRANSMEMBRANE mobidb-lite	18
Lj3g3v2225730.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: late embryogenesis abundant protein 1-like [Cicer arietinum] gi\|502147742\|ref\|XP_004506897.1\|	Domains Coil PTHR23241 SSF58113 mobidb-lite	5
Lj4g3v0451180.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA ligase 1-like [Cicer arietinum] gi\|502142646\|ref\|XP_004505057.1\|	Domains Coil PTHR35295 SSF58113 mobidb-lite	5
Lj6g3v2017530.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Late embryogenesis abundant protein [Medicago truncatula] gi\|357446653\|ref\|XP_003593602.1\|	Domains Coil PTHR23241 PTHR23241:SF65 SSF58113 mobidb-lite	6
LotjaGi1g1v0398000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Myosin heavy chain-like protein; TAIR: AT4G31340.1 myosin heavy chain-like protein; Swiss-Prot: sp\|P07942\|LAMB1_HUMAN Laminin subunit beta-1; TrEMBL-Plants: tr\|I3T954\|I3T954_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0398000	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.20.5.1230 NON_CYTOPLASMIC_DOMAIN PTHR34360 PTHR34360:SF1 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF57997 SSF58113 SignalP-TM SignalP-noTM TMhelix TRANSMEMBRANE mobidb-lite	18
LotjaGi1g1v0398000.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Myosin heavy chain-like protein; TAIR: AT4G31340.1 myosin heavy chain-like protein; Swiss-Prot: sp\|P07942\|LAMB1_HUMAN Laminin subunit beta-1; TrEMBL-Plants: tr\|I3T954\|I3T954_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0398000	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:1.20.5.1230 NON_CYTOPLASMIC_DOMAIN PTHR34360 PTHR34360:SF1 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF57997 SSF58113 SignalP-TM SignalP-noTM TMhelix TRANSMEMBRANE mobidb-lite	18
LotjaGi2g1v0423700_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Apolipoprotein A-IV; TAIR: AT1G53260.1 hypothetical protein; Swiss-Prot: sp\|P02651\|APOA4_RAT Apolipoprotein A-IV; TrEMBL-Plants: tr\|V4TVY3\|V4TVY3_9ROSI Uncharacterized protein; Found in the gene: LotjaGi2g1v0423700_LC	Domains G3DSA:1.20.120.20 SSF58113 mobidb-lite	4
LotjaGi3g1v0359100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Late embryogenesis-abundant protein; TAIR: AT1G52690.1 Late embryogenesis abundant protein (LEA) family protein; Swiss-Prot: sp\|O49816\|LEA1_CICAR Late embryogenesis abundant protein 1; TrEMBL-Plants: tr\|A0A072UH01\|A0A072UH01_MEDTR Late embryogenesis abundant protein group 3 protein; Found in the gene: LotjaGi3g1v0359100	Domains Coil G3DSA:1.20.120.20 PTHR47372 PTHR47372:SF1 SSF58113 mobidb-lite	7
LotjaGi4g1v0055800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA ligase-like protein; TAIR: AT2G33793.1 DNA ligase-like protein; Swiss-Prot: sp\|Q21313\|EPI1_CAEEL Laminin-like protein epi-1; TrEMBL-Plants: tr\|A0A1J7I6J1\|A0A1J7I6J1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0055800	Domains Coil PTHR35295 PTHR35295:SF1 SSF58113 mobidb-lite	6

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	10.00