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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0362300 |
| Transcript ID | LotjaGi3g1v0362300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein SYS1 like; TAIR: AT1G79985.1 structural molecules protein; Swiss-Prot: sp|Q55E69|SYS1_DICDI Protein SYS1 homolog; TrEMBL-Plants: tr|I3SU62|I3SU62_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0362300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:74608916..74616199) extracted from Lotus japonicus Gifu genome v1.2.
AACAAACGACACTTCCGGTCTGAACATCACGCATAGTTCACGTCACTGCAATTCTTCTCCCAAATTCTTCATCTCTCGCC ATCGCCGGAGCAAAACACTTCAATTTTCTCTCCGACAACACGTTCTCTTCCCGGCGAGTCCTCCACCACCCTGTAATTTT CCCTTCTCACAATCTCTCTTCATCTCAATACTCCCAGAAACTAGGAATTTCCACGCTCTTCAATTTCTCGTAAGATTCAC CAATCATGAACTGTATTATTTTCTCTTTTATCATATCAATTTTGTTTTACATTCAATTTCTCAACAATTATCACTTCCTG AATCCAGATCTGACTGCACACGAACCATCGTTTACGCTTCGGCTGAACGTGACAACAACCTTGATTTGGGTTTAAACTGC TTTAAAGAATCTGGGGTCTCGAAATTTGATAACTTTTGTCGAATGACAAGTGGTGTTGCTTATTTTATTGCGATTTGGGC ATCTGGGTCGGTGAGATTGGCTGCTGTAGCGGAAAAAGCTTGAAACTTGGTGTTTTGATTCGCTTTAGGCAAATTTTGTG GGAGAAGGTTTTGGACTGTTTGTGAGTGAGTGAGTTTGCACTTTGCAGGGTCGGCGTCATGTTCTATGGTGCAGTGGTAT GGGACCCTTGGCTTATTGTTGCTCAAATTGTTTGTCTGCAATGCATGTACTATATCACATTGGGATTGTTGTTGTCATTA CTTGTTGGAACTCGCGTATCGCGGATGAGCCTCGTGTATTTCTTTGACTATGTTACAATCTCTACATCTACGGTTACTGG TTGGTCTGTTGTTGCTTCATTTTTGCTCAGTTCAGTTGCAGGGTAATTGTTCTATTCCACCTAAACTCATCCTAGTTGGT TTGTTGAAATCATTGTGCAAGAATTGTTAATTGGCTAGCCTATAATTGATTGCTAATTAATACTAGTAATTATATTCAAT TGTGTTAGTCTTACTTCTTTCTGATTTTGACTGGCTCCTCTCCTTAATAGTTTATCGTAGTTTTTTGTTGTTGTATAAAC ATCCGGTACCCGGTCACCCTTTGGATGCCACCAGATTTAGGATTTAGTCACTATTAAGGCTCATCATCCCTCCCCCATAG TGTATTGTGTGGGGATCGAACCCGTGAGCTCTTCCCACACACTCAGTCTGCGTTGCCAACTTAGCTACCCCTCTTGGGTT TTATCATAGTTTTTAATCACAGGGTTATGGTGCAATTTTTCAATCTTAATTGCTTCTTCAAAGATGATGATCCTTTACAA ATTTTCAAATTATTGTAACCTAGTATTTAGTATCTTTCGTGCTTTTTTTGTTTGTTCGGTTTAGCATCGTTATGTTCACA AGTTTGCGAATGGGTGTTCATTCTTAAATGTTTTTATTCTCATTGGGGGTTGAATTGATTGTGCTTTGTTCCAGTAAGGG AAAGGAAACAAAAATCCCGGCTTTGAGATGGATGCGCCTTCCTTTAGGAAAGTCCACGTGTCTGTTGGGAATGTAAAGAA ATAGGATTTGGTTTACAAATCAAATCTTATGTTTGGGGTGTTTAAATAAAATAAGTAATGAGGTGATATTGTAAAATCCA ATAGCAACTTTGTCAAATAAGGTGTTTGTTGTTCTGTGATTATTTTGTGTGGGAGGAAGGAACCAAGGGAGACATTATGA GCTTTTATGTATTTCTTGGCTTGTTAACTGAAATCATGCAGTAGCTTTAAGTTGTATTCACGCCAAAGGTCACTAACTCA CTACGGTTTTAATGCAGGGCTGTATATATGCTGTATTTGATTGAAAGAGCAAAGAAGTGCTTGGATTTTTCGGCCACTCT CTACATCATCCATCTGTTTCTATGCATTGTGTACGGGGGTTGGCCTTCTGCTATAACGTGGTGGATTGTGAATGGTACTG GAATTGCAGTGATGGCTTTGCTAGGTGAATATTTGTGTATCAGGCGGGAACTCCAGGAGATACCAATAACACGATTACGT TCAAGTAAGAACTTCCTCCTTTATTGATGTTTAGCTGGTTAATGGAGATGTGCTATTTGAAGATTTTTTATCTGCAATAT ATTATGTTTTGTATCCTCCTTGGTTATGTGTTTACCTGTTTCAGAAGCCTGAATATTGTTCAGGATGTCAAACTCAGAGG GACAAACTTAATTTATGCAAATGTTGTATATAGTTATTTGAATTTGACCATCCTATTGCAAATTGTAAAAGTTGTCGTCT CTCTGAGTAATTTGTTAACTAATAATTTTCGTTATGTGGACGTAATGGTGTGTTGAATAGCAATATTTGTATTGGTTGGC TATTCCTTCGATTTAACATAGTTGAGTTCCTTGCAGATGTTTGATTGGTAGAACTCAAGTGTTGCATTGAAGAAGGGAGT TGTGCCTCAGGATGGTAACAACTTTTGTTTCTATATATTGGATGATCTTCAAGATAAAGCCCATGAACTTCATAAAGTAC ATAGTTCTGCTATGCCATTGAAAGACCTACATTTCCTTTCTATTGGTTAGTTGCAATAGAGTAAAACATAGATAATCAGA CGAGACTAGGTACATGATTGTTCAGAAGATTCTGAAAGTCTTAGTGTAAGTGATTCTATTTCGTTTTTAACTCTCCAAGT GTTTTTGGTTAAGATGATGCATTTAGTTGATTGAGCTTCTATTCTTTTTTACCCTTTTTGCGAGTTCTTGGATCTGTAAA ATCTTGGAAATATATATTAGTTCTATGGCACTACCTTTTATTGGATTGTTAACCTCAGTCAGATTTTTATTTCAACTTCT TTTGATTGATAATTTTGTACCTCACGTTCATGCTTGATCTTCTTGACTCCCTCTATATTGATTGCTGAGTGTTGCATAGT AACACTAGTTTCTAACCAATAATTTGTAGAAGGTACATCATGTTTTGGTTCACCTTGATGAATATCTGAATTGGCCTTTG TTAGTTTAAGATATGAATTATGAATATTCTTCTTCATTCCAGTGTTAATCCTTTTATGTGGCCAATCAAGTCATGGTGCA TCTAATCACCATTAATCTTGTACTTCGATGATAGCATTTCATAATTTTCACGTTAAATGAATGACATCTAAATCACAATG CATTCATCACAGAGCCATGGTTATTAACCTTGTTTAAGTTACAAGAGAACTTGCATGATTTACACTTTAGGCATTAGAAA CGCTGCTTCTAACGATGGCGTTCTCCAATAGTATGTGCTTGTGCTAGTTCTATTGATGAAAGTGGCATAATATGAGCTTG AAATTTTGAAAATAAAGGCATAAAAATGATCGGAAAATGTGCACAATTTGGTGATGTAAAGTTGTGCAAAAGAAGAGTCA AACACTCGTCTTGAATTCTTTCTTTGTTCTTAAAATAAATATATTCATACTTATCCTTAATGTCCACAGAATAAAGTCAT CGTCACCATATTTCAAGCTTGGATGCTCTTTTTCTCTAACAAAAGCCAAAATTGGACAAAAGTAACAGAAGACATAAAAA TAACATCCTGAGATATGAAACACCCTGATTTTCAAGGTTTTTTTTTTTTTACTAAAACAAAGTACTCAGCAGGTTGGCGA AAAACTTCCAATGTTAGTTTTGTGGTGAAAGTTAGAAGCCGTGATCTCCCTTTGTCCTTGAGATTCATCTGTGGAAATTA AGCTTGAGCTTTCCAGTGGGATGAAATGTCAGCCACAGCTTCTCCCACTGTGAGATAGACTCCTTTCAACCCAAAGGAAT CCAAAATGTTTGAGTGGTGTAACTTTTCTATCACATTTCCAACAGGATTTGCCAACACAAGCTGCACCAATCAATTAAAA ATGTAAAGAATATAAAGAAAACTGGATCAAGTCTTAAAATGTTGAAGGGTGTTACTTTTTGCACCTCATTTTCTCTGCAC CACCATTGGTAGCTTCCAAAAATTATTTTTCGGAAGCATGTGGAGTGGTGTAGTGAAAGAGAACGAGGTGAAGAAGTAAC ACTTTGCAGTTAGTACCTGAAGTGATCTTTTGTCCAGCATCCTTCTAAGTTCACATAAAGTGTCTATCCCACTTGTGTCT ATGGCAGTAACAGCTGAAAAAGAAAAAGAAATATCTTTAAGCAAAAATGTTCTCAAAACCATGGTTATCAAATCGAGATA CGTATCGTGTATGTGTATCGTATCATATCATAACTTGTATCATTAGATACAGACACACAAAAAATTAAGTCATAAATTGA ATAATATACTAATATACCATATAAATATAGTTCAAAATAATCAAATATCCAAGCCATAAGAAGAAAAATTATCTCACAAA GTTCAAGTTCAACCTAGTTCCAAGCCATAAGCCAAACTAAATGTCTAACTTCCTAATTTCTAGGAAAAAAATTGTTGAAA TTGAAACGGTGAAGAACAGAAGAAGAAAGCCAACGTTGGTAGGAGGCAGAGAATAACTGAAACAGTGATGAACAGAAGAA GAAAACAAACGTGGCAGCAACAACAATTTTTAGGTTTACTTTTAATGAAATTAAATGTCTCACTCCCTAATCTCTAGGAA AAATAGTTGAAACAACATTCTTGACCAATTTTTTTTTTTTTAAAAAAGCATCTGAAATGTTTAAATCACGAACTGGGTCG CGAGACCTGACCTCGGATTCAACGAATTCCAGATTGTGTTCGAATCGTGTCATACGCCTGACAATACAATACATGTGATA CACTTGCAATTCATGCGATTCAGGACGCGATTCGAACACAAAAAGATACATTCATGGGACACGCATCATTGGGGTGATTT TCGTATCGTATCGCCATACGTATCGTGCAATACCGATACAAATAACCATGCTCAAAACTCAGATAACAAACTTTGCAAGT GAAATGGAATACTTGCCTGTCATGTCTAAAATTATGCACCTCAATGTACTTTCTTTGTTTGCTTCTACACGTTCTTCCTC TTCGCGAACCCATCTCAATATCCTATAGCAGGAGAAGCTCTTAGATTGTTGGAATCTTAGAATCACTCAGAAAAAAACTA GACTGAAACTTCACATAAAATTAACACTACTTTTCGCCTTATCTAACCTTTCTTGCAGGTAAGTTGCATTAGCAAAGTAG ATTGGAGACTCAACCGCCAAAATGAGAAATGAAGGCATCCTCAAAGCTTCTCTATACTGGTTAAGGTTGTGGAATATCGT TGTCCCTGGTATATTCCCCAAAACCAGTGTGTTTGGCCGCGAGACATGAAGCAGGATCTTGAAGACTGATATTGCCACCT GAAGATTTTGGCGAAGTCATTAAGTTTTAATTGCATAGCATTAGCATATTTTCAGCTTTGTAATAACGGGAAACAGATTG GTGAATTACAAGATTACCGCGATTCCAAGGCCTAAAGGCACTGAAATGAACAGAACCCCAAAGAAGGAGCACAAGCAGGC CAAGAAATCAAGCTTGTCAACCTTCCACAATTTATAGGCAGCTTGATAATCTATTAGCCCTATAACAGCAGTGATGATAA TGGCTGCTAACACAACATTTGGAGTGTAATAGAACAGAGGCATGAGAAACAAAAGGGTCACAAGAACTGCTGAAGCCATG ATAATATTAGAGACTGCTGTCCGTGCTCCGGCATTATAGTTAACCGCTGATCGTGAAAAGGATCCTGCAAGTGTGTTTTA AAATTAGAATGGATATTTTCTTAGAAGTTCATTGCTTCAATAACTACAATTCACACGGTCAAATGAGAGAAGAATCATTG CCTGTTGTGACATAGCATGAAGAGCAAGAGCCAGCTATGTTCATAACACCAATGGCTATCATTTCTTTGTTTCCATCTAC TTGGTAGTTTCTAAGTGCAGCAAATGTTCTTCCTACAGCAATTCCTTCCTGAAACAGAAGTTCCAGTTGAGTTAAGCTAT TAAGCCTAAGGTGGACACCATGTTTTTTTAAAAAGTTTACACATTAACTTTAGTAAACTTCTTCATGACCAGTTATGTTT CTAGGTTTGAAACAGCTTACAGTGAGAGACAAGATCCCAGTGACAAGTCCGGTTTTGATAGCGAGGGCCAAATAAGGACC ATTGAAGTATAACATGTTTGATGATGGTGGATTAAGTCCCTTTGGCAGTTCACCAATCTGCCAGAGAAAACACAAAACAA AGTGTTACTAGGAAGAAATAGCATCTCTTGTGTGCTTAAAATAACCAAGTTAGAGTGTCCTTTCTTACAATTGCAATTGT ATGGGTCTTATTTCTCAAACAAGAGACTAAAATGGTAGACAGAATAACTGAAGCCAATGGGGCAGCTGCTGAAACCCAGA ACAATTTTGGCTTCCTCAAGCTCTGTTGCAACCATACAGAATTTTCAGATCTTAAGAATCAGGTGAATTGTCATAAAAAA GAGCAGACGAATAAGGATTCTCTCATGTGAAAACCTACTGTTTTCTCATTTCGCAATTTTGTGTTTAAAATAGACACGCA GTACACGAGAGGATCCTAATCCCATATGATACATGTTATTAGTATATGCAAGATAAAATAATCTTACAATTTGCCTTGCT ATAAGCAGGAAGGCCAGGAAGCTGATTCCCAATAAAATGGTATGCCATGACCACTGCACAAAGTTTCTCAAAAAAATTAA ATGAGCATATATGCATATTTAATTATGCTAAAATGTGCATCACTTGGACAAAAACATTTGAAAGTGGCCCTTAATGGCCT AGCTATTCCATATTTCACTTCATGAATAATTGGAATCTGATCTCTTAACATAAAAGTCAAAAGCAAAGAATATCTTAAAG AAAATAGCGTTAGCAGTCTCATTGATAGTGTTAATTCTTATATTTGATTTTTTTTTGAAAGTGGTTAATTCTTATATTTG TTAAAACAGAATAAGTGCTATTAGAATGTTAGCCGTCAGATTTAAAATTGCAAAAAGATAATTACAAAATATATAGATTA AATTGTAGCCGTCCTTTTAAAAAATTCTCAATTTTTTTTCTGTAGTATTGGAAAGAATATAAAAATAAAAAAATACATAC CTCGTCCCTATGCTTGAAAACAGAGACCATTACGGGTATTATTTGCATCTTGCCGGTGAAGTGAACTATTCCAAGCAACC CTTTGAGTTGTTGTAGTGACACAATGATCGCTGCACCAGCCATGAAACCCACTAGTGTTGCCTTTGAGAGAAAATCAATT ACAAAGCCTAACCTGTATACACCATCAAAGGTTATTTTTTCAATCATTAAAATATAACTTGCCAATAAAAAATTAGCCTT CAAA
CDS sequence (LotjaGi3g1v0362300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTATGGTGCAGTGGTATGGGACCCTTGGCTTATTGTTGCTCAAATTGTTTGTCTGCAATGCATGTACTATATCAC ATTGGGATTGTTGTTGTCATTACTTGTTGGAACTCGCGTATCGCGGATGAGCCTCGTGTATTTCTTTGACTATGTTACAA TCTCTACATCTACGGTTACTGGTTGGTCTGTTGTTGCTTCATTTTTGCTCAGTTCAGTTGCAGGGGCTGTATATATGCTG TATTTGATTGAAAGAGCAAAGAAGTGCTTGGATTTTTCGGCCACTCTCTACATCATCCATCTGTTTCTATGCATTGTGTA CGGGGGTTGGCCTTCTGCTATAACGTGGTGGATTGTGAATGGTACTGGAATTGCAGTGATGGCTTTGCTAGGTGAATATT TGTGTATCAGGCGGGAACTCCAGGAGATACCAATAACACGATTACGTTCAAATGTTTGA
Protein sequence (LotjaGi3g1v0362300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFYGAVVWDPWLIVAQIVCLQCMYYITLGLLLSLLVGTRVSRMSLVYFFDYVTISTSTVTGWSVVASFLLSSVAGAVYML YLIERAKKCLDFSATLYIIHLFLCIVYGGWPSAITWWIVNGTGIAVMALLGEYLCIRRELQEIPITRLRSNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 151 | 151 | 6.4E-71 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PIRSF | 1 | 152 | 152 | 9.1E-58 | ||
| PANTHER | 1 | 151 | 151 | 6.4E-71 | ||
| Pfam | 5 | 144 | 140 | 1.1E-44 | ||
| Phobius | 12 | 40 | 29 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 41 | 59 | 19 | - | – | |
| Phobius | 60 | 83 | 24 | - | – | |
| TMHMM | 61 | 83 | 23 | - | – | |
| Phobius | 84 | 89 | 6 | - | – | |
| Phobius | 90 | 110 | 21 | - | – | |
| TMHMM | 98 | 120 | 23 | - | – | |
| Phobius | 111 | 115 | 5 | - | – | |
| Phobius | 116 | 136 | 21 | - | – | |
| Phobius | 137 | 152 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Golgi membrane | The lipid bilayer surrounding any of the compartments of the Golgi apparatus. |
Expression pattern of LotjaGi3g1v0362300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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