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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0366800 |
| Transcript ID | LotjaGi3g1v0366800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem I reaction center subunit VI; TAIR: AT1G52230.1 photosystem I subunit H2; Swiss-Prot: sp|P22179|PSAH_SPIOL Photosystem I reaction center subunit VI, chloroplastic; TrEMBL-Plants: tr|I3TAC8|I3TAC8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0366800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75308667..75314004) extracted from Lotus japonicus Gifu genome v1.2.
GTAGCTAAGAGTTTTGGAGAGGATAGGCTTATCTATCTTCAAGCCACATGTCACCTCGTAAATGAGTCATCAAATCTTCT CAAGTAAACGTACCTGGCCACATGGCAACATGATCTCCAAGTAACATATCAAAACCAAAACATCCCCATTGGCAACAACC AGAAACTGAATCATCACTTATTGATACAAAGAGAGAAGAAAGTTTGAAGGTAACACCATCACCATGGCTTCTCTTGCTAC CTTAGCTGCTGTTCAACCAGCTGCAATCAATGGTCTTGCTGGAAGTTCCCTTAATGGAACTAAGCTCTCCTTCAAGTCCT CTCGCCAGAGCATCAAATCCAAGAACTTCAGGTTCCACATGCATTTACTCATATTGTGCAACTTGACTATAGGAATATCA AATCCTTAGTTTATTTTTTGTGTATGTTTTAATTGTATGCTCAACTTGTTTAAGCAAACATTGCAGGAATGGTGCTGTGG TAGCAAAGTATGGTGACAAGAGTGTGTACTTTGATTTGGAGGATATTGGTAACACTACAGGACAGTGGGACTTGTATGGT TCAGATGCACCTTCACCTTACAACTCTCTTCAGGTTTGATAAGAGTAGTAGTAGTAGTAATATTTGGGGATTGGCTATTT GCTCTTCAATTTTCATACATATCTTTTACATGAACTTTGCTACTTGCATTAGAACTGTCACAACTAGAGGCTAAACCTTA CACATGAAAATGCAACTTATGTATAACATGAACATAGAAAATAGTGAAGAGAATAAAAGGAATAAAGTAGGAAGATTGAA ATGTTTTTGGGAAGGCCATAGGCAGAATGGTTTCTGTAAGGCAAATGTTAATTCTGGATTGTAGGCAGTCCATGACTCAA TGATTTGAAATCTATGAAGAAACATTTCTGTATGGGTCATAACTCTACTTCCCGGCTCCTTTAAGATTGGTCGGCTCTTA CGTTTCATCAAGATTGGATGCAGAGATAAGCTTAAAGTTTTAGTCCTCTGATTTTTGTTGAACAACTTAGATTCCTTGAC CTTGTGAATTTAGGAATTTCTTGACAACAAATTCTAGCATAAATGCTTACTCATGAGCTAATTTGATAAGCTTATTGAAA TAAACTCAAAAAATTGGTTATAAATAAGTGTAAGCGCTTATTCATAAGCTAATTTGAGTTGCTAATGAAAATAAGCTCAA AATAGTTTTTAGGTAGGTCGTGAGTTATTTGCATACGCTCACTCGACACTTGCATAAGCAAGCATATATGTTATAAGATT AGCTCGATTAAGTTCTTTCAAATTGGCCTAAAGCTCCCATTCTAGGATTAGGATTCTCCTGAGACTCTATCACCACAACT GAATAGGGACGGTGTCAATGCTGTAATAGAAATGAGCTTGAAAACACATGGTTGGCCCCAAAAAGTTTTTTCTTTTTCCA AAACAACTTTGTCCTTTGAGTTTGCCTTAAATACCTAAACTAATTATATAGCTCTTTGATCCATATGGATTTGCAGAGCA AGTTCTTTGAGACATTTGCTGCTCCATTCACAAAGAGGGGATTGTTGCTCAAGTTTCTGATCTTGGGAGGTGGTTCCACC CTCGCATACTACAGTGCCACAGCTTCTGGTGACATTCTACCAATCAAGAAGGGCCCTCAACTTCCACCAAAGCTCGGTCC TCGTGGCAAGATCTAATTACTATCACTTCAGAACTTCATCTATTGAGTTCTTTTTTCTTTTTTTCTCTTGCATAATGTGT AAGTATGCGTACAGCTATTCAAAGATGTTAATTTCCAATTTCCAATCTAATTGAGTGGCACTGCTATGATGTTAATTCAT GTTTCTTTTTATGTCTTGGCATTTGTGGAATCACATTGTATTAATGCAAATAAAAAAACAGACACATATTAAGAAGATCA AATTCATGTATATACAAGTAACTTCAGAGTTAACTACAGTAACTTAATTATGAGAACAAATTTGGATACACATAATATTG ATGAGAGAGGATGATTGTCAATAGAATTGGACAGTGTTTATGCAAATGAGAGTTAGGAATGGTTCTTTCTATCAGGCCTA ATCCTCCTGCCATCATAGGCTGATTAGAGTTACAAGCCTTTTTAAGGTACAATGGCGGTGTGAGTTCATAAAAAAATTCA CATTTTGTAGGTGCCACCATACACAACTTGTGAAAAATACCTCAAACCCTGATGATTGTTATATTCATTTTTATGTACAA AAAGAAAGAATAGATGATCAAGAATAAATAAGGTCTCAAACAACTCCTCTCCAAGACCAACCATTCTTGTTTTCTTGCCT TTTTTAAATCTCTCCCTCTTACAACTCTTAACTCTTAACTTTTCTGGGTTAATGACGCGATGTGGGACTTCTCATACCTC CCAAGGTCTCAAGATAAGAAACCTTCTTGTCTGTCACTACATTTGGGAGTTTTTGAGGCTTTCCACTATCAATGTCTTTG TAGAAGTCATCTGTTGCAGCAAGAGGGTCCTTCTTAATGTCTGAGTCACCTTGATCACCATGCCAACCCATGAAATCAGA TAGTGTCATTGACCCGGGTGTTTCTGCTCCACCCTTGTCCACCTCTTCTCTAGGAGTTGGACACTTCTCTGGCTTGGGAA CTTGGTTTCTCACACTGCTCCTTCTTCCAGCTAGTGATGGGTTTTGAGTGAGGTGATCTGCATGGAGTACATCTTCTATT CTTGACAGCACTGTAAAAGCCAAACTTTCCAATATTCTTGAATAGCTTTCAAGAACAGCTTGCCCCACATCCTGCCATCA TAAGTGATCCTTAAGCACATATGGTAGTGAAACAAAACACTAATATTTGTCTATTGTTATGACTAGAACTTATAATAGAT ATGGCAACACGCCAGGATCAAGCTCTAGAATACTTGGTTATAAAGGCTCTGATAACATGTGATGAACCAACTAACTTGAA AGCTTAAGCGGTTAGGTGAAAGCATATGAATGGTTTTGTATTATATTTATATCAATCATCCATGGAAAAAATTAATGCAA CATTGAAACTGAGAAGCATGCAGAATCAAACTACTAGCAGGGGATGCTCTTACCCGGTTGAATTGGATTTTGCTTATATC CAATGAAGATTGGGGAAGCCCAGGAAAACGGTGCTTCAAAAGAATTAAGATGGTTTCTGCTCTCTCTTCAAAGAGTTCTC TTTTTTCCAAGCTCACAGCAGAACCCCAAGCTGACTTGGTATCTTTTTGGTTCATCTTCCGCTTCCAAATCACTATTGAC GCCTCGATTCTGTTCTTGAGATCTAGGATTTTATGTTCTGATGTCATGTCCATAGTAGCTAGGAACTGATCAGGATCAAA AACGTCATCTGTAATGCTACGGTAGATCGAGTCCCCTAGACTGGCTCTTCCATTCTGTAAAAGAAGTAAAAAGACCAAAA TTTATATAATGTGAAAAGATATGAAATTGTTAATCAAGAAAACTTCTATGCAGATACTAGTTCTGTTTTACTTACCTTGG GTAGGGATTCAATATAGCTTTCAGGGATCTCCATCTCCGATAGGGTCTGTGCATTTATGGCCATCGCTGCTTTAAGTACT TGATTCATACAATCTTTTTGATACTGCAGAAACCTTCTCGCCACATCAGATAAACCCTCTGCAGGAACCTTAGGTGTAGG TAACCACCACTTGTCATCATTTTTTCTCTTTGAACTATCTTTATCTGCATCATCTGCATCTTTTGATACATAGTAGAACT CATTCTGGTCTTTGAAGTTATCTAGACAATCCTGCTCATCATCAGCAAGTTTTTTAAGAGCTAACAACCAATTGAGACCT ATCTATAGAAAAATAATGATCATTTTGGTTAGTGATCTTACAATAAGCATGTTGTCAAGCTTTCTTAAGGCAGGGATATT CATGTGGAGATCCGTTCGTTGTCGCGTTGTCATAATCTATTTATTCAAAGATGAGGATCAATCGTATAGCAACTGTCATA GGGAGAATAAGGAACATTGGAAAAGTAGGGTGAGTGAGGAGGGTTACCTCCATGCTGGATCCATCTTTTGCTTTTTGTTG AGTAGGAACCATCTCAACAACATAATCTGTCACTGATAGAAGCCAATCAATTTCCTTTCTCCATCTGGCTTTCCTCTCGG GCGGCATCGGCTCTAGGCGCTTTTGTTCACCAAAAACAGCAGCTGCATTCTCAGCAAGAAAACGATGAAAAACTTACAAG AGCTATTTGAAACATTTCTTCTATCCAGAGCTCATGAAAATGGAAGTAACATCACAATGGGTATCCATCATGATTCAAGT AGCATATAAAGAAAGTAAAAGCTAAAAAGTCAACATACCAGCAAGGTTTGTGAATGCATTTGACAGTGCCAGAGCTGATG AAACACCCTTTCCTCCACCAGACATATCCTCCCCCAATAGCAATTTAGCAAATCTCTCCTTCATCTGTTCCATTTCTGAA TTAAACCCAACCATAAATATTAAAATTATAAACAAATTCAATGCAAGGGCATCTTCAGAGTTTCTAAATCAATATGGTTT CAATTATAGTTGAAGAAAATGAGCTAATTCTGTTCTGTCAGGTGTATATTAATATCCCCTATGCATGAAAAAATTGGTAA CAGCTATAAAATGTAAAACTCTACATTTATACTCAGTTTGTTTACCAATCAAAAAGTATGAAAACGGGAAAATAACATAT TTCGTGACACAGGCATACTTAATGGGAAATTAGATTGGGGGGTAATTAACATTGGTGTTTATTCACCTTGCAATAGCTTC TCTTTGGCTTCTTTTGCTGCTATTTCCTCCTTGATTGCTCTTGACCTTTGAGCCTTCTCAGTAGAATCATTTAGAGGTTT TGATCCTTGACTTCTCGATGTTGCTGGATCTTCGTCTGAAGGACTTAACGTGCTGGCGCTCTCAATGCTCAAGCTCTTTG TATGCCTCCCCGTATTCTCAAACATCCCTCTGAAATGGAATAATTTGGACCTGTAACTTTCCTGCTCTTGTTCCAGTGCC CGAACCATTTTTCCTTATAAATTTGAAGGAAAAAACTTTCTCAAAGCCTGAACAAACAAGAACAAAACATGGGGTTCCCA GGTCCCTGAGGGAGGGGAAAGGGGAGGAATGAAAGAAAAGAAAATGCAAGTTTGTTGTTACTTGTCTGGCAAGGGAGAGA GAAGGAGGAAAATAGCAGGGGGAGAAGCCAGAGTTGCAAATGGTGTTTTTTTAGGAGGATGAGTTTGACAAAAAGGTTGG AGGGTGATTATTTGTTAGTTTTATTTTCTTTTTTGAGCTGTGTGAATTGAACGTGGGG
CDS sequence (LotjaGi3g1v0366800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTCTTGCTACCTTAGCTGCTGTTCAACCAGCTGCAATCAATGGTCTTGCTGGAAGTTCCCTTAATGGAACTAA GCTCTCCTTCAAGTCCTCTCGCCAGAGCATCAAATCCAAGAACTTCAGGAATGGTGCTGTGGTAGCAAAGTATGGTGACA AGAGTGTGTACTTTGATTTGGAGGATATTGGTAACACTACAGGACAGTGGGACTTGTATGGTTCAGATGCACCTTCACCT TACAACTCTCTTCAGAGCAAGTTCTTTGAGACATTTGCTGCTCCATTCACAAAGAGGGGATTGTTGCTCAAGTTTCTGAT CTTGGGAGGTGGTTCCACCCTCGCATACTACAGTGCCACAGCTTCTGGTGACATTCTACCAATCAAGAAGGGCCCTCAAC TTCCACCAAAGCTCGGTCCTCGTGGCAAGATCTAA
Protein sequence (LotjaGi3g1v0366800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLATLAAVQPAAINGLAGSSLNGTKLSFKSSRQSIKSKNFRNGAVVAKYGDKSVYFDLEDIGNTTGQWDLYGSDAPSP YNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYYSATASGDILPIKKGPQLPPKLGPRGKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| PANTHER | 1 | 144 | 144 | 3.1E-85 | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 144 | 144 | 3.1E-85 | ||
| Phobius | 4 | 15 | 12 | - | – | |
| Pfam | 7 | 144 | 138 | 4.0E-72 | ||
| Phobius | 16 | 19 | 4 | - | – | |
| Phobius | 20 | 144 | 125 | - | – | |
| Gene3D | 59 | 127 | 69 | 2.1E-40 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Photosystem I | A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation). | ||
| Cellular component | Photosystem I reaction center | A photochemical system containing P700, the chlorophyll a dimer that functions as a primary electron donor. Functioning as a light-dependent plastocyanin-ferredoxin oxidoreductase, it transfers electrons from plastocyanin to ferredoxin. | ||
| Biological process | Photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. |
Expression pattern of LotjaGi3g1v0366800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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